RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 WASHC2CQ9Y4E1 1318 aa25■■□□□ 1.59
SF3A1-204ENST00000447376 ZMYM3Q14202 1370 aa25■■□□□ 1.59
SF3A1-204ENST00000447376 ERBINQ96RT1 1412 aa25■■□□□ 1.59
SF3A1-204ENST00000447376 KDM5DQ9BY66 1539 aa24.98■■□□□ 1.59
SF3A1-204ENST00000447376 PREX1Q8TCU6 1659 aa24.97■■□□□ 1.59
SF3A1-204ENST00000447376 UHRF1BP1Q6BDS2 1440 aa24.96■■□□□ 1.59
SF3A1-204ENST00000447376 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.96■■□□□ 1.59
SF3A1-204ENST00000447376 RNF17Q9BXT8 1623 aaKnown RBP24.96■■□□□ 1.59
SF3A1-204ENST00000447376 ADGRL2O95490 1459 aa24.96■■□□□ 1.59
SF3A1-204ENST00000447376 NCOA1Q15788 1441 aa24.95■■□□□ 1.59
SF3A1-204ENST00000447376 LMTK3Q96Q04 1460 aa24.95■■□□□ 1.58
SF3A1-204ENST00000447376 NPATQ14207 1427 aa24.94■■□□□ 1.58
SF3A1-204ENST00000447376 SETD1BQ9UPS6 1966 aaKnown RBP24.93■■□□□ 1.58
SF3A1-204ENST00000447376 ITGAEP38570 1179 aa24.92■■□□□ 1.58
SF3A1-204ENST00000447376 ZC3H13Q5T200 1668 aaKnown RBP24.91■■□□□ 1.58
SF3A1-204ENST00000447376 KANK1Q14678 1352 aa24.91■■□□□ 1.58
SF3A1-204ENST00000447376 RRBP1Q9P2E9 1410 aaKnown RBP24.88■■□□□ 1.57
SF3A1-204ENST00000447376 ROCK1Q13464 1354 aa24.86■■□□□ 1.57
SF3A1-204ENST00000447376 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.86■■□□□ 1.572e-7■■■□□ 16.9
SF3A1-204ENST00000447376 PTPRKQ15262 1439 aa24.85■■□□□ 1.57
SF3A1-204ENST00000447376 ANKRD50Q9ULJ7 1429 aa24.85■■□□□ 1.57
SF3A1-204ENST00000447376 PZPP20742 1482 aa24.84■■□□□ 1.57
SF3A1-204ENST00000447376 HSPA2P54652 639 aa24.84■■□□□ 1.57
SF3A1-204ENST00000447376 ABCC3O15438 1527 aa24.84■■□□□ 1.57
SF3A1-204ENST00000447376 PRDM15P57071 1507 aaPredicted RBP24.84■■□□□ 1.57
SF3A1-204ENST00000447376 MROH1Q8NDA8 1641 aa24.82■■□□□ 1.56
SF3A1-204ENST00000447376 DEPDC5O75140 1603 aa24.81■■□□□ 1.56
SF3A1-204ENST00000447376 CEP152O94986 1710 aa24.79■■□□□ 1.56
SF3A1-204ENST00000447376 TNRQ92752 1358 aa24.79■■□□□ 1.56
SF3A1-204ENST00000447376 MYO3AQ8NEV4 1616 aa24.78■■□□□ 1.56
SF3A1-204ENST00000447376 CAMSAP1Q5T5Y3 1602 aa24.77■■□□□ 1.56
SF3A1-204ENST00000447376 FBXO31Q5XUX0 539 aaPredicted RBP24.75■■□□□ 1.55
SF3A1-204ENST00000447376 ZNF142P52746 1687 aaPredicted RBP24.73■■□□□ 1.55
SF3A1-204ENST00000447376 CEP170BQ9Y4F5 1589 aaPredicted RBP24.73■■□□□ 1.55
SF3A1-204ENST00000447376 DMRT2Q9Y5R5 561 aa24.72■■□□□ 1.55
SF3A1-204ENST00000447376 ARHGAP31Q2M1Z3 1444 aa24.71■■□□□ 1.55
SF3A1-204ENST00000447376 A2ML1A8K2U0 1454 aa24.7■■□□□ 1.55
SF3A1-204ENST00000447376 LMTK2Q8IWU2 1503 aa24.7■■□□□ 1.54
SF3A1-204ENST00000447376 NLRP1Q9C000 1473 aa24.7■■□□□ 1.54
SF3A1-204ENST00000447376 ERVK-7P63135 1459 aa24.69■■□□□ 1.54
SF3A1-204ENST00000447376 SPATA31D1Q6ZQQ2 1576 aa24.68■■□□□ 1.54
SF3A1-204ENST00000447376 VWDEQ8N2E2 1590 aa24.68■■□□□ 1.54
SF3A1-204ENST00000447376 UNC13BO14795 1591 aa24.67■■□□□ 1.54
SF3A1-204ENST00000447376 EFCAB6Q5THR3 1501 aa24.64■■□□□ 1.53
SF3A1-204ENST00000447376 THEMISQ8N1K5 641 aaPredicted RBP24.62■■□□□ 1.53
SF3A1-204ENST00000447376 CFAP65Q6ZU64 1925 aaKnown RBP24.62■■□□□ 1.53
SF3A1-204ENST00000447376 PLA2R1Q13018 1463 aa24.62■■□□□ 1.53
SF3A1-204ENST00000447376 NUP155O75694 1391 aa24.61■■□□□ 1.53
SF3A1-204ENST00000447376 UGGT1Q9NYU2 1555 aa24.61■■□□□ 1.53
SF3A1-204ENST00000447376 TET3O43151 1660 aa24.61■■□□□ 1.53
SF3A1-204ENST00000447376 GCC2Q8IWJ2 1684 aa24.61■■□□□ 1.53
SF3A1-204ENST00000447376 PKD2Q13563 968 aa24.6■■□□□ 1.53
SF3A1-204ENST00000447376 RPRD2Q5VT52 1461 aaKnown RBP24.59■■□□□ 1.53
SF3A1-204ENST00000447376 STRCQ7RTU9 1775 aa24.59■■□□□ 1.53
SF3A1-204ENST00000447376 HFM1A2PYH4 1435 aa24.59■■□□□ 1.53
SF3A1-204ENST00000447376 NAIPQ13075 1403 aa24.58■■□□□ 1.53
SF3A1-204ENST00000447376 IQGAP3Q86VI3 1631 aa24.57■■□□□ 1.52
SF3A1-204ENST00000447376 STAG3Q9UJ98 1225 aa24.57■■□□□ 1.52
SF3A1-204ENST00000447376 PTPRTO14522 1441 aa24.55■■□□□ 1.52
SF3A1-204ENST00000447376 NCKAP5LQ9HCH0 1330 aa24.53■■□□□ 1.52
SF3A1-204ENST00000447376 ANKLE2Q86XL3 938 aa24.52■■□□□ 1.52
SF3A1-204ENST00000447376 TRIM52Q96A61 297 aa24.51■■□□□ 1.51
SF3A1-204ENST00000447376 SLC52A1Q9NWF4 448 aa24.51■■□□□ 1.51
SF3A1-204ENST00000447376 NOS1P29475 1434 aa24.5■■□□□ 1.51
SF3A1-204ENST00000447376 POLR1AO95602 1720 aaPredicted RBP24.48■■□□□ 1.51
SF3A1-204ENST00000447376 UBR1Q8IWV7 1749 aa24.47■■□□□ 1.51
SF3A1-204ENST00000447376 E9PCH4 1651 aa24.46■■□□□ 1.51
SF3A1-204ENST00000447376 SYNMO15061 1565 aa24.46■■□□□ 1.51
SF3A1-204ENST00000447376 ACIN1Q9UKV3 1341 aaKnown RBP24.46■■□□□ 1.51
SF3A1-204ENST00000447376 PIK3C2BO00750 1634 aa24.46■■□□□ 1.51
SF3A1-204ENST00000447376 IDI1Q13907 227 aa24.45■■□□□ 1.5
SF3A1-204ENST00000447376 KDM5AP29375 1690 aaKnown RBP24.44■■□□□ 1.5
SF3A1-204ENST00000447376 EID1Q9Y6B2 187 aa24.44■■□□□ 1.5
SF3A1-204ENST00000447376 ADGRB3O60242 1522 aa24.4■■□□□ 1.5
SF3A1-204ENST00000447376 NPHP4O75161 1426 aaPredicted RBP24.38■■□□□ 1.49
SF3A1-204ENST00000447376 CHGAP10645 457 aaKnown RBP24.38■■□□□ 1.49
SF3A1-204ENST00000447376 SLC4A1APQ9BWU0 796 aaKnown RBP24.38■■□□□ 1.49
SF3A1-204ENST00000447376 SLIT1O75093 1534 aa24.38■■□□□ 1.49
SF3A1-204ENST00000447376 SETD5Q9C0A6 1442 aa24.37■■□□□ 1.49
SF3A1-204ENST00000447376 TXNDC2Q86VQ3 553 aa24.37■■□□□ 1.49
SF3A1-204ENST00000447376 SCAF11Q99590 1463 aaKnown RBP24.37■■□□□ 1.49
SF3A1-204ENST00000447376 NEURL4Q96JN8 1562 aa24.37■■□□□ 1.49
SF3A1-204ENST00000447376 HDGFP51858 240 aaKnown RBP24.36■■□□□ 1.49
SF3A1-204ENST00000447376 TMEM2Q9UHN6 1383 aa24.36■■□□□ 1.49
SF3A1-204ENST00000447376 MED14O60244 1454 aa24.36■■□□□ 1.49
SF3A1-204ENST00000447376 ARHGAP23Q9P227 1491 aa24.35■■□□□ 1.49
SF3A1-204ENST00000447376 SPHKAPQ2M3C7 1700 aa24.35■■□□□ 1.49
SF3A1-204ENST00000447376 IQGAP1P46940 1657 aa24.34■■□□□ 1.49
SF3A1-204ENST00000447376 CERKQ8TCT0 537 aa24.34■■□□□ 1.49
SF3A1-204ENST00000447376 PPP1R15AO75807 674 aaPredicted RBP24.3■■□□□ 1.48
SF3A1-204ENST00000447376 ZNF335Q9H4Z2 1342 aaPredicted RBP24.29■■□□□ 1.48
SF3A1-204ENST00000447376 LTKP29376 864 aa24.28■■□□□ 1.48
SF3A1-204ENST00000447376 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.28■■□□□ 1.48
SF3A1-204ENST00000447376 BCANQ96GW7 911 aa24.28■■□□□ 1.48
SF3A1-204ENST00000447376 TMEM131LA2VDJ0 1609 aa24.28■■□□□ 1.48
SF3A1-204ENST00000447376 TRPM2O94759 1503 aa24.27■■□□□ 1.48
SF3A1-204ENST00000447376 RAB3GAP2Q9H2M9 1393 aa24.26■■□□□ 1.47
SF3A1-204ENST00000447376 FBXO41Q8TF61 875 aa24.25■■□□□ 1.47
SF3A1-204ENST00000447376 RIMS2Q9UQ26 1411 aa24.25■■□□□ 1.47
SF3A1-204ENST00000447376 LTBP4Q8N2S1 1624 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms