RNA–Protein interactions for RNA: ENST00000445181.5

C9orf3-207, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 873 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-207ENST00000445181 SHANK2Q9UPX8 1470 aa36.75■■■■□ 3.47
C9orf3-207ENST00000445181 PTPRKQ15262 1439 aa36.71■■■■□ 3.47
C9orf3-207ENST00000445181 DMRT2Q9Y5R5 561 aa36.69■■■■□ 3.46
C9orf3-207ENST00000445181 CHIC2Q9UKJ5 165 aa36.68■■■■□ 3.46
C9orf3-207ENST00000445181 STRCQ7RTU9 1775 aa36.68■■■■□ 3.46
C9orf3-207ENST00000445181 WASHC2CQ9Y4E1 1318 aa36.65■■■■□ 3.46
C9orf3-207ENST00000445181 RRP7BPQ9NSQ0 103 aa36.63■■■■□ 3.45
C9orf3-207ENST00000445181 FBXO41Q8TF61 875 aa36.62■■■■□ 3.45
C9orf3-207ENST00000445181 KIF15Q9NS87 1388 aa36.62■■■■□ 3.45
C9orf3-207ENST00000445181 KDM5DQ9BY66 1539 aa36.61■■■■□ 3.45
C9orf3-207ENST00000445181 ANKRD30AQ9BXX3 1397 aa36.61■■■■□ 3.45
C9orf3-207ENST00000445181 FAM135AQ9P2D6 1515 aa36.6■■■■□ 3.45
C9orf3-207ENST00000445181 DUOX2Q9NRD8 1548 aa36.59■■■■□ 3.45
C9orf3-207ENST00000445181 FBXO31Q5XUX0 539 aaPredicted RBP36.56■■■■□ 3.44
C9orf3-207ENST00000445181 MYO3AQ8NEV4 1616 aa36.56■■■■□ 3.44
C9orf3-207ENST00000445181 NCOA1Q15788 1441 aa36.55■■■■□ 3.44
C9orf3-207ENST00000445181 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.54■■■■□ 3.446e-10■■■■■ 31.3
C9orf3-207ENST00000445181 ITGAEP38570 1179 aa36.54■■■■□ 3.44
C9orf3-207ENST00000445181 CAMSAP1Q5T5Y3 1602 aa36.53■■■■□ 3.44
C9orf3-207ENST00000445181 PTPRTO14522 1441 aa36.52■■■■□ 3.44
C9orf3-207ENST00000445181 PZPP20742 1482 aa36.52■■■■□ 3.44
C9orf3-207ENST00000445181 RNF17Q9BXT8 1623 aaKnown RBP36.52■■■■□ 3.44
C9orf3-207ENST00000445181 RRBP1Q9P2E9 1410 aaKnown RBP36.51■■■■□ 3.44
C9orf3-207ENST00000445181 CERKQ8TCT0 537 aa36.51■■■■□ 3.44
C9orf3-207ENST00000445181 CEP170BQ9Y4F5 1589 aaPredicted RBP36.51■■■■□ 3.44
C9orf3-207ENST00000445181 EIF2AK4Q9P2K8 1649 aaKnown RBP36.51■■■■□ 3.43
C9orf3-207ENST00000445181 ADGRL2O95490 1459 aa36.5■■■■□ 3.43
C9orf3-207ENST00000445181 ZNF142P52746 1687 aaPredicted RBP36.49■■■■□ 3.43
C9orf3-207ENST00000445181 TNRQ92752 1358 aa36.49■■■■□ 3.43
C9orf3-207ENST00000445181 ERBINQ96RT1 1412 aa36.48■■■■□ 3.43
C9orf3-207ENST00000445181 NCKAP5LQ9HCH0 1330 aa36.46■■■■□ 3.43
C9orf3-207ENST00000445181 A2ML1A8K2U0 1454 aa36.44■■■■□ 3.42
C9orf3-207ENST00000445181 ABCC3O15438 1527 aa36.44■■■■□ 3.42
C9orf3-207ENST00000445181 PLA2R1Q13018 1463 aa36.41■■■■□ 3.42
C9orf3-207ENST00000445181 MROH1Q8NDA8 1641 aa36.4■■■■□ 3.42
C9orf3-207ENST00000445181 ZC3H13Q5T200 1668 aaKnown RBP36.39■■■■□ 3.42
C9orf3-207ENST00000445181 PKD2Q13563 968 aa36.38■■■■□ 3.41
C9orf3-207ENST00000445181 ROCK1Q13464 1354 aa36.37■■■■□ 3.41
C9orf3-207ENST00000445181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.33■■■■□ 3.412e-13■■□□□ 12.2
C9orf3-207ENST00000445181 ANKRD50Q9ULJ7 1429 aa36.33■■■■□ 3.41
C9orf3-207ENST00000445181 CEP152O94986 1710 aa36.3■■■■□ 3.4
C9orf3-207ENST00000445181 NLRP1Q9C000 1473 aa36.3■■■■□ 3.4
C9orf3-207ENST00000445181 PRDM15P57071 1507 aaPredicted RBP36.28■■■■□ 3.4
C9orf3-207ENST00000445181 KANK1Q14678 1352 aa36.27■■■■□ 3.4
C9orf3-207ENST00000445181 THEMISQ8N1K5 641 aaPredicted RBP36.26■■■■□ 3.4
C9orf3-207ENST00000445181 ERVK-7P63135 1459 aa36.25■■■■□ 3.39
C9orf3-207ENST00000445181 SPATA31D1Q6ZQQ2 1576 aa36.25■■■■□ 3.39
C9orf3-207ENST00000445181 DEPDC5O75140 1603 aa36.25■■■■□ 3.39
C9orf3-207ENST00000445181 LTBP4Q8N2S1 1624 aa36.23■■■■□ 3.39
C9orf3-207ENST00000445181 UGGT1Q9NYU2 1555 aa36.21■■■■□ 3.39
C9orf3-207ENST00000445181 ARHGAP31Q2M1Z3 1444 aa36.19■■■■□ 3.38
C9orf3-207ENST00000445181 ANKLE2Q86XL3 938 aa36.19■■■■□ 3.38
C9orf3-207ENST00000445181 CFAP65Q6ZU64 1925 aaKnown RBP36.18■■■■□ 3.38
C9orf3-207ENST00000445181 ZNF335Q9H4Z2 1342 aaPredicted RBP36.17■■■■□ 3.38
C9orf3-207ENST00000445181 POLR1AO95602 1720 aaPredicted RBP36.11■■■■□ 3.37
C9orf3-207ENST00000445181 NEURL4Q96JN8 1562 aa36.1■■■■□ 3.37
C9orf3-207ENST00000445181 VWDEQ8N2E2 1590 aa36.09■■■■□ 3.37
C9orf3-207ENST00000445181 LMTK2Q8IWU2 1503 aa36.08■■■■□ 3.37
C9orf3-207ENST00000445181 UNC13BO14795 1591 aa36.06■■■■□ 3.36
C9orf3-207ENST00000445181 NAIPQ13075 1403 aa36.05■■■■□ 3.36
C9orf3-207ENST00000445181 IQSEC2Q5JU85 1478 aa36.04■■■■□ 3.36
C9orf3-207ENST00000445181 GCC2Q8IWJ2 1684 aa36.02■■■■□ 3.36
C9orf3-207ENST00000445181 HFM1A2PYH4 1435 aa36.01■■■■□ 3.36
C9orf3-207ENST00000445181 NPHP4O75161 1426 aaPredicted RBP36.01■■■■□ 3.36
C9orf3-207ENST00000445181 MED14O60244 1454 aa36■■■■□ 3.35
C9orf3-207ENST00000445181 NUP155O75694 1391 aa36■■■■□ 3.35
C9orf3-207ENST00000445181 UBR1Q8IWV7 1749 aa36■■■■□ 3.35
C9orf3-207ENST00000445181 EFCAB6Q5THR3 1501 aa35.98■■■■□ 3.35
C9orf3-207ENST00000445181 IDI1Q13907 227 aa35.94■■■■□ 3.34
C9orf3-207ENST00000445181 STAG3Q9UJ98 1225 aa35.94■■■■□ 3.34
C9orf3-207ENST00000445181 TET3O43151 1660 aa35.93■■■■□ 3.34
C9orf3-207ENST00000445181 IQGAP3Q86VI3 1631 aa35.93■■■■□ 3.34
C9orf3-207ENST00000445181 PIK3C2BO00750 1634 aa35.91■■■■□ 3.34
C9orf3-207ENST00000445181 TXNDC2Q86VQ3 553 aa35.91■■■■□ 3.34
C9orf3-207ENST00000445181 NOS1P29475 1434 aa35.91■■■■□ 3.34
C9orf3-207ENST00000445181 IQGAP1P46940 1657 aa35.91■■■■□ 3.34
C9orf3-207ENST00000445181 LTKP29376 864 aa35.89■■■■□ 3.34
C9orf3-207ENST00000445181 SCAF11Q99590 1463 aaKnown RBP35.88■■■■□ 3.33
C9orf3-207ENST00000445181 ARHGAP23Q9P227 1491 aa35.88■■■■□ 3.33
C9orf3-207ENST00000445181 SYNMO15061 1565 aa35.88■■■■□ 3.33
C9orf3-207ENST00000445181 SLIT1O75093 1534 aa35.88■■■■□ 3.33
C9orf3-207ENST00000445181 EID1Q9Y6B2 187 aa35.87■■■■□ 3.33
C9orf3-207ENST00000445181 RPRD2Q5VT52 1461 aaKnown RBP35.86■■■■□ 3.33
C9orf3-207ENST00000445181 TRIM52Q96A61 297 aa35.86■■■■□ 3.33
C9orf3-207ENST00000445181 CPS1P31327 1500 aa35.86■■■■□ 3.33
C9orf3-207ENST00000445181 UBAP1LF5GYI3 381 aa35.85■■■■□ 3.33
C9orf3-207ENST00000445181 SLC52A1Q9NWF4 448 aa35.85■■■■□ 3.33
C9orf3-207ENST00000445181 TMEM2Q9UHN6 1383 aa35.84■■■■□ 3.33
C9orf3-207ENST00000445181 E9PCH4 1651 aa35.79■■■■□ 3.32
C9orf3-207ENST00000445181 KDM5AP29375 1690 aaKnown RBP35.79■■■■□ 3.32
C9orf3-207ENST00000445181 SETD5Q9C0A6 1442 aa35.74■■■■□ 3.31
C9orf3-207ENST00000445181 ADGRB3O60242 1522 aa35.73■■■■□ 3.31
C9orf3-207ENST00000445181 SLC4A1APQ9BWU0 796 aaKnown RBP35.68■■■■□ 3.3
C9orf3-207ENST00000445181 STRCP1A6NGW2 1772 aa35.66■■■■□ 3.3
C9orf3-207ENST00000445181 TOM1O60784 492 aa35.66■■■■□ 3.3
C9orf3-207ENST00000445181 LRRC7Q96NW7 1537 aa35.62■■■■□ 3.29
C9orf3-207ENST00000445181 ACIN1Q9UKV3 1341 aaKnown RBP35.62■■■■□ 3.29
C9orf3-207ENST00000445181 CHGAP10645 457 aaKnown RBP35.62■■■■□ 3.29
C9orf3-207ENST00000445181 RAB3GAP2Q9H2M9 1393 aa35.61■■■■□ 3.29
C9orf3-207ENST00000445181 SCAF1Q9H7N4 1312 aaKnown RBP35.6■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms