RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 KCNA4P22459 653 aa12.27□□□□□ -0.45
CD44-211ENST00000442151 CEBPAP49715 358 aaPredicted RBP12.25□□□□□ -0.45
CD44-211ENST00000442151 HSPA2P54652 639 aa12.25□□□□□ -0.45
CD44-211ENST00000442151 SAMD9LQ8IVG5 1584 aa12.25□□□□□ -0.45
CD44-211ENST00000442151 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
CD44-211ENST00000442151 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
CD44-211ENST00000442151 ABCA6Q8N139 1617 aa12.24□□□□□ -0.45
CD44-211ENST00000442151 SPDYE1Q8NFV5 336 aaPredicted RBP12.24□□□□□ -0.45
CD44-211ENST00000442151 RTEL1-TNFRSF6BF6WH68 1400 aa12.24□□□□□ -0.45
CD44-211ENST00000442151 SYCP2Q9BX26 1530 aa12.24□□□□□ -0.45
CD44-211ENST00000442151 PREX1Q8TCU6 1659 aa12.23□□□□□ -0.45
CD44-211ENST00000442151 KIDINS220Q9ULH0 1771 aa12.23□□□□□ -0.45
CD44-211ENST00000442151 A2MP01023 1474 aa12.23□□□□□ -0.45
CD44-211ENST00000442151 SIGLEC1Q9BZZ2 1709 aa12.22□□□□□ -0.45
CD44-211ENST00000442151 NPATQ14207 1427 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 ATP7AQ04656 1500 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 SPDYE2BA6NHP3 402 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 SPDYE6P0CI01 402 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 SPDYE2Q495Y8 402 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 GGT6Q6P531 493 aa12.21□□□□□ -0.45
CD44-211ENST00000442151 POTEIP0CG38 1075 aa12.21□□□□□ -0.46
CD44-211ENST00000442151 ZMYM3Q14202 1370 aa12.2□□□□□ -0.46
CD44-211ENST00000442151 SUPT6HQ7KZ85 1726 aaKnown RBP12.2□□□□□ -0.46
CD44-211ENST00000442151 VPS8Q8N3P4 1428 aa12.2□□□□□ -0.46
CD44-211ENST00000442151 DHX29Q7Z478 1369 aaKnown RBP12.19□□□□□ -0.46
CD44-211ENST00000442151 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
CD44-211ENST00000442151 CLCN6P51797 869 aa12.19□□□□□ -0.46
CD44-211ENST00000442151 CERKQ8TCT0 537 aa12.19□□□□□ -0.46
CD44-211ENST00000442151 TIAM1Q13009 1591 aa12.18□□□□□ -0.46
CD44-211ENST00000442151 NCOA2Q15596 1464 aa12.18□□□□□ -0.46
CD44-211ENST00000442151 MAP3K1Q13233 1512 aa12.18□□□□□ -0.46
CD44-211ENST00000442151 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
CD44-211ENST00000442151 ATF5Q9Y2D1 282 aaPredicted RBP12.18□□□□□ -0.46
CD44-211ENST00000442151 ZNF644Q9H582 1327 aaPredicted RBP12.17□□□□□ -0.46
CD44-211ENST00000442151 MROH2AA6NES4 1674 aa12.17□□□□□ -0.46
CD44-211ENST00000442151 ADGBQ8N7X0 1667 aa12.17□□□□□ -0.46
CD44-211ENST00000442151 PTPRTO14522 1441 aa12.17□□□□□ -0.46
CD44-211ENST00000442151 CCDC141Q6ZP82 1450 aa12.17□□□□□ -0.46
CD44-211ENST00000442151 MBD5Q9P267 1494 aa12.17□□□□□ -0.46
CD44-211ENST00000442151 INO80Q9ULG1 1556 aaPredicted RBP12.17□□□□□ -0.46
CD44-211ENST00000442151 C3P01024 1663 aa12.16□□□□□ -0.46
CD44-211ENST00000442151 LRRC9Q6ZRR7 1453 aa12.15□□□□□ -0.46
CD44-211ENST00000442151 KIF3BO15066 747 aa12.15□□□□□ -0.46
CD44-211ENST00000442151 PKD2Q13563 968 aa12.15□□□□□ -0.46
CD44-211ENST00000442151 MIA2Q96PC5 1412 aa12.13□□□□□ -0.47
CD44-211ENST00000442151 FAM135AQ9P2D6 1515 aa12.13□□□□□ -0.47
CD44-211ENST00000442151 PLXNC1O60486 1568 aa12.13□□□□□ -0.47
CD44-211ENST00000442151 WASHC2CQ9Y4E1 1318 aa12.13□□□□□ -0.47
CD44-211ENST00000442151 CAMSAP2Q08AD1 1489 aa12.13□□□□□ -0.47
CD44-211ENST00000442151 ARHGEF5Q12774 1597 aa12.11□□□□□ -0.47
CD44-211ENST00000442151 PCDH10Q9P2E7 1040 aa12.11□□□□□ -0.47
CD44-211ENST00000442151 POTEMA6NI47 508 aa12.11□□□□□ -0.47
CD44-211ENST00000442151 MYOM3Q5VTT5 1437 aa12.1□□□□□ -0.47
CD44-211ENST00000442151 PTPRKQ15262 1439 aa12.1□□□□□ -0.47
CD44-211ENST00000442151 CLTCQ00610 1675 aaKnown RBP12.09□□□□□ -0.47
CD44-211ENST00000442151 NCOA1Q15788 1441 aa12.09□□□□□ -0.47
CD44-211ENST00000442151 THEMISQ8N1K5 641 aaPredicted RBP12.08□□□□□ -0.48
CD44-211ENST00000442151 KANK4Q5T7N3 995 aaPredicted RBP12.07□□□□□ -0.48
CD44-211ENST00000442151 PLA2R1Q13018 1463 aa12.07□□□□□ -0.48
CD44-211ENST00000442151 STRCQ7RTU9 1775 aa12.07□□□□□ -0.48
CD44-211ENST00000442151 TNRQ92752 1358 aa12.06□□□□□ -0.48
CD44-211ENST00000442151 CAMSAP1Q5T5Y3 1602 aa12.06□□□□□ -0.48
CD44-211ENST00000442151 IQSEC2Q5JU85 1478 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 NCKAP5LQ9HCH0 1330 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 MAST1Q9Y2H9 1570 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 ANKLE2Q86XL3 938 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 KDM5DQ9BY66 1539 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 A2ML1A8K2U0 1454 aa12.05□□□□□ -0.48
CD44-211ENST00000442151 POTEGQ6S5H5 508 aa12.04□□□□□ -0.48
CD44-211ENST00000442151 PZPP20742 1482 aa12.04□□□□□ -0.48
CD44-211ENST00000442151 CEP170BQ9Y4F5 1589 aaPredicted RBP12.03□□□□□ -0.48
CD44-211ENST00000442151 NLRP1Q9C000 1473 aa12.02□□□□□ -0.48
CD44-211ENST00000442151 DCBLD2Q96PD2 775 aa12.02□□□□□ -0.48
CD44-211ENST00000442151 KANK1Q14678 1352 aa12.02□□□□□ -0.49
CD44-211ENST00000442151 DUOX2Q9NRD8 1548 aa12.01□□□□□ -0.49
CD44-211ENST00000442151 ZNF142P52746 1687 aaPredicted RBP12.01□□□□□ -0.49
CD44-211ENST00000442151 MYO3AQ8NEV4 1616 aa12.01□□□□□ -0.49
CD44-211ENST00000442151 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
CD44-211ENST00000442151 CHADLQ6NUI6 762 aa12□□□□□ -0.49
CD44-211ENST00000442151 EIF2AK4Q9P2K8 1649 aaKnown RBP12□□□□□ -0.49
CD44-211ENST00000442151 ANKRD30AQ9BXX3 1397 aa12□□□□□ -0.49
CD44-211ENST00000442151 RRP7BPQ9NSQ0 103 aa11.99□□□□□ -0.49
CD44-211ENST00000442151 TCOF1Q13428 1488 aaKnown RBP11.99□□□□□ -0.49
CD44-211ENST00000442151 SHANK2Q9UPX8 1470 aa11.99□□□□□ -0.49
CD44-211ENST00000442151 CD44P16070 742 aaKnown RBP11.98□□□□□ -0.49
CD44-211ENST00000442151 ZC3H13Q5T200 1668 aaKnown RBP11.98□□□□□ -0.49
CD44-211ENST00000442151 KIF15Q9NS87 1388 aa11.98□□□□□ -0.49
CD44-211ENST00000442151 ERBINQ96RT1 1412 aa11.98□□□□□ -0.49
CD44-211ENST00000442151 RNF17Q9BXT8 1623 aaKnown RBP11.97□□□□□ -0.49
CD44-211ENST00000442151 OTUD5Q96G74 571 aa11.97□□□□□ -0.49
CD44-211ENST00000442151 DNMT1P26358 1616 aaKnown RBP11.97□□□□□ -0.49
CD44-211ENST00000442151 PTPN23Q9H3S7 1636 aa11.97□□□□□ -0.49
CD44-211ENST00000442151 ABCC5O15440 1437 aa11.96□□□□□ -0.49
CD44-211ENST00000442151 FGD6Q6ZV73 1430 aa11.96□□□□□ -0.49
CD44-211ENST00000442151 LTBP4Q8N2S1 1624 aa11.96□□□□□ -0.5
CD44-211ENST00000442151 EID1Q9Y6B2 187 aa11.95□□□□□ -0.5
CD44-211ENST00000442151 DAPK1P53355 1430 aa11.95□□□□□ -0.5
CD44-211ENST00000442151 UGGT1Q9NYU2 1555 aa11.95□□□□□ -0.5
CD44-211ENST00000442151 UBAP1LF5GYI3 381 aa11.95□□□□□ -0.5
CD44-211ENST00000442151 TOM1O60784 492 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms