RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.65■■■□□ 2.02
CPSF4-205ENST00000440514 NCOA1Q15788 1441 aa27.65■■■□□ 2.02
CPSF4-205ENST00000440514 ESF1Q9H501 851 aaKnown RBP27.64■■■□□ 2.02
CPSF4-205ENST00000440514 ERBINQ96RT1 1412 aa27.64■■■□□ 2.02
CPSF4-205ENST00000440514 MROH1Q8NDA8 1641 aa27.63■■■□□ 2.01
CPSF4-205ENST00000440514 CEBPAP49715 358 aaPredicted RBP27.62■■■□□ 2.01
CPSF4-205ENST00000440514 KDM5DQ9BY66 1539 aa27.61■■■□□ 2.01
CPSF4-205ENST00000440514 ITGAEP38570 1179 aa27.6■■■□□ 2.01
CPSF4-205ENST00000440514 FAM135AQ9P2D6 1515 aa27.58■■■□□ 2.01
CPSF4-205ENST00000440514 DEPDC5O75140 1603 aa27.56■■■□□ 2
CPSF4-205ENST00000440514 PRDM15P57071 1507 aaPredicted RBP27.55■■■□□ 2
CPSF4-205ENST00000440514 ZC3H13Q5T200 1668 aaKnown RBP27.54■■■□□ 2
CPSF4-205ENST00000440514 CEP152O94986 1710 aa27.53■■■□□ 2
CPSF4-205ENST00000440514 ABCC3O15438 1527 aa27.53■■■□□ 2
CPSF4-205ENST00000440514 ROCK1Q13464 1354 aa27.53■■■□□ 2
CPSF4-205ENST00000440514 ZMYM3Q14202 1370 aa27.53■■■□□ 2
CPSF4-205ENST00000440514 PPP6R1Q9UPN7 881 aa27.53■■■□□ 2
CPSF4-205ENST00000440514 PREX1Q8TCU6 1659 aa27.52■■■□□ 2
CPSF4-205ENST00000440514 LMTK3Q96Q04 1460 aa27.52■■■□□ 2
CPSF4-205ENST00000440514 ANKRD50Q9ULJ7 1429 aa27.5■■□□□ 1.99
CPSF4-205ENST00000440514 WASHC2CQ9Y4E1 1318 aa27.48■■□□□ 1.99
CPSF4-205ENST00000440514 CAMSAP1Q5T5Y3 1602 aa27.47■■□□□ 1.99
CPSF4-205ENST00000440514 NPATQ14207 1427 aa27.45■■□□□ 1.98
CPSF4-205ENST00000440514 PZPP20742 1482 aa27.44■■□□□ 1.98
CPSF4-205ENST00000440514 VWDEQ8N2E2 1590 aa27.43■■□□□ 1.98
CPSF4-205ENST00000440514 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.42■■□□□ 1.98
CPSF4-205ENST00000440514 MYO3AQ8NEV4 1616 aa27.41■■□□□ 1.98
CPSF4-205ENST00000440514 GCC2Q8IWJ2 1684 aa27.41■■□□□ 1.98
CPSF4-205ENST00000440514 UNC13BO14795 1591 aa27.41■■□□□ 1.98
CPSF4-205ENST00000440514 UHRF1BP1Q6BDS2 1440 aa27.41■■□□□ 1.98
CPSF4-205ENST00000440514 SETD1BQ9UPS6 1966 aaKnown RBP27.38■■□□□ 1.97
CPSF4-205ENST00000440514 KANK1Q14678 1352 aa27.37■■□□□ 1.97
CPSF4-205ENST00000440514 LMTK2Q8IWU2 1503 aa27.36■■□□□ 1.97
CPSF4-205ENST00000440514 HSPA2P54652 639 aa27.35■■□□□ 1.97
CPSF4-205ENST00000440514 FBXO31Q5XUX0 539 aaPredicted RBP27.35■■□□□ 1.97
CPSF4-205ENST00000440514 ZNF142P52746 1687 aaPredicted RBP27.34■■□□□ 1.97
CPSF4-205ENST00000440514 NAIPQ13075 1403 aa27.33■■□□□ 1.96
CPSF4-205ENST00000440514 ERVK-7P63135 1459 aa27.32■■□□□ 1.96
CPSF4-205ENST00000440514 EFCAB6Q5THR3 1501 aa27.31■■□□□ 1.96
CPSF4-205ENST00000440514 SPATA31D1Q6ZQQ2 1576 aa27.31■■□□□ 1.96
CPSF4-205ENST00000440514 TNRQ92752 1358 aa27.31■■□□□ 1.96
CPSF4-205ENST00000440514 CEP170BQ9Y4F5 1589 aaPredicted RBP27.31■■□□□ 1.96
CPSF4-205ENST00000440514 HFM1A2PYH4 1435 aa27.3■■□□□ 1.96
CPSF4-205ENST00000440514 ARHGAP31Q2M1Z3 1444 aa27.29■■□□□ 1.96
CPSF4-205ENST00000440514 TET3O43151 1660 aa27.28■■□□□ 1.96
CPSF4-205ENST00000440514 IQGAP3Q86VI3 1631 aa27.28■■□□□ 1.96
CPSF4-205ENST00000440514 CFAP65Q6ZU64 1925 aaKnown RBP27.27■■□□□ 1.96
CPSF4-205ENST00000440514 A2ML1A8K2U0 1454 aa27.23■■□□□ 1.95
CPSF4-205ENST00000440514 NUP155O75694 1391 aa27.21■■□□□ 1.95
CPSF4-205ENST00000440514 NLRP1Q9C000 1473 aa27.2■■□□□ 1.95
CPSF4-205ENST00000440514 E9PCH4 1651 aa27.19■■□□□ 1.94
CPSF4-205ENST00000440514 STRCQ7RTU9 1775 aa27.18■■□□□ 1.94
CPSF4-205ENST00000440514 SYNMO15061 1565 aa27.18■■□□□ 1.94
CPSF4-205ENST00000440514 RPRD2Q5VT52 1461 aaKnown RBP27.16■■□□□ 1.94
CPSF4-205ENST00000440514 UGGT1Q9NYU2 1555 aa27.14■■□□□ 1.93
CPSF4-205ENST00000440514 NOS1P29475 1434 aa27.13■■□□□ 1.93
CPSF4-205ENST00000440514 PIK3C2BO00750 1634 aa27.11■■□□□ 1.93
CPSF4-205ENST00000440514 UBR1Q8IWV7 1749 aa27.1■■□□□ 1.93
CPSF4-205ENST00000440514 PLA2R1Q13018 1463 aa27.1■■□□□ 1.93
CPSF4-205ENST00000440514 TRIM52Q96A61 297 aa27.05■■□□□ 1.92
CPSF4-205ENST00000440514 POLR1AO95602 1720 aaPredicted RBP27.04■■□□□ 1.92
CPSF4-205ENST00000440514 SETD5Q9C0A6 1442 aa27.04■■□□□ 1.92
CPSF4-205ENST00000440514 SPHKAPQ2M3C7 1700 aa27.02■■□□□ 1.92
CPSF4-205ENST00000440514 ADGRB3O60242 1522 aa27.01■■□□□ 1.91
CPSF4-205ENST00000440514 NCKAP5LQ9HCH0 1330 aa27.01■■□□□ 1.91
CPSF4-205ENST00000440514 KDM5AP29375 1690 aaKnown RBP27■■□□□ 1.91
CPSF4-205ENST00000440514 NEURL4Q96JN8 1562 aa27■■□□□ 1.91
CPSF4-205ENST00000440514 IDI1Q13907 227 aa26.98■■□□□ 1.91
CPSF4-205ENST00000440514 THEMISQ8N1K5 641 aaPredicted RBP26.98■■□□□ 1.91
CPSF4-205ENST00000440514 RAB3GAP2Q9H2M9 1393 aa26.97■■□□□ 1.91
CPSF4-205ENST00000440514 PTPRTO14522 1441 aa26.97■■□□□ 1.91
CPSF4-205ENST00000440514 MYO5BQ9ULV0 1848 aa26.95■■□□□ 1.9
CPSF4-205ENST00000440514 PKD2Q13563 968 aa26.94■■□□□ 1.9
CPSF4-205ENST00000440514 ARHGAP23Q9P227 1491 aa26.93■■□□□ 1.9
CPSF4-205ENST00000440514 SLC4A1APQ9BWU0 796 aaKnown RBP26.93■■□□□ 1.9
CPSF4-205ENST00000440514 SLC52A1Q9NWF4 448 aa26.93■■□□□ 1.9
CPSF4-205ENST00000440514 SLIT1O75093 1534 aa26.93■■□□□ 1.9
CPSF4-205ENST00000440514 TRPM2O94759 1503 aa26.92■■□□□ 1.9
CPSF4-205ENST00000440514 TMEM131LA2VDJ0 1609 aa26.92■■□□□ 1.9
CPSF4-205ENST00000440514 STAG3Q9UJ98 1225 aa26.92■■□□□ 1.9
CPSF4-205ENST00000440514 DMRT2Q9Y5R5 561 aa26.92■■□□□ 1.9
CPSF4-205ENST00000440514 CLTCL1P53675 1640 aa26.9■■□□□ 1.9
CPSF4-205ENST00000440514 ANKLE2Q86XL3 938 aa26.88■■□□□ 1.89
CPSF4-205ENST00000440514 IQGAP1P46940 1657 aa26.88■■□□□ 1.89
CPSF4-205ENST00000440514 SCAF11Q99590 1463 aaKnown RBP26.87■■□□□ 1.89
CPSF4-205ENST00000440514 TMEM2Q9UHN6 1383 aa26.87■■□□□ 1.89
CPSF4-205ENST00000440514 NPHP4O75161 1426 aaPredicted RBP26.86■■□□□ 1.89
CPSF4-205ENST00000440514 MED14O60244 1454 aa26.86■■□□□ 1.89
CPSF4-205ENST00000440514 FOXD1Q16676 465 aa26.84■■□□□ 1.89
CPSF4-205ENST00000440514 CHGAP10645 457 aaKnown RBP26.83■■□□□ 1.89
CPSF4-205ENST00000440514 MPHOSPH9Q99550 1183 aa26.83■■□□□ 1.89
CPSF4-205ENST00000440514 LTKP29376 864 aa26.81■■□□□ 1.88
CPSF4-205ENST00000440514 ACIN1Q9UKV3 1341 aaKnown RBP26.8■■□□□ 1.88
CPSF4-205ENST00000440514 ZFYVE9O95405 1425 aa26.8■■□□□ 1.88
CPSF4-205ENST00000440514 TXNDC2Q86VQ3 553 aa26.79■■□□□ 1.88
CPSF4-205ENST00000440514 RIMS2Q9UQ26 1411 aa26.78■■□□□ 1.88
CPSF4-205ENST00000440514 KIF1BO60333 1816 aa26.77■■□□□ 1.88
CPSF4-205ENST00000440514 EID1Q9Y6B2 187 aa26.77■■□□□ 1.88
CPSF4-205ENST00000440514 LTBP4Q8N2S1 1624 aa26.76■■□□□ 1.87
CPSF4-205ENST00000440514 ZNF335Q9H4Z2 1342 aaPredicted RBP26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms