RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 KIDINS220Q9ULH0 1771 aa12.36□□□□□ -0.43
VPS50-203ENST00000436177 A2MP01023 1474 aa12.34□□□□□ -0.43
VPS50-203ENST00000436177 NPATQ14207 1427 aa12.33□□□□□ -0.44
VPS50-203ENST00000436177 C3P01024 1663 aa12.32□□□□□ -0.44
VPS50-203ENST00000436177 TIAM1Q13009 1591 aa12.32□□□□□ -0.44
VPS50-203ENST00000436177 INO80Q9ULG1 1556 aaPredicted RBP12.32□□□□□ -0.44
VPS50-203ENST00000436177 GGT6Q6P531 493 aa12.32□□□□□ -0.44
VPS50-203ENST00000436177 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
VPS50-203ENST00000436177 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
VPS50-203ENST00000436177 ZMYM3Q14202 1370 aa12.3□□□□□ -0.44
VPS50-203ENST00000436177 SETD1BQ9UPS6 1966 aaKnown RBP12.3□□□□□ -0.44
VPS50-203ENST00000436177 PTPRTO14522 1441 aa12.29□□□□□ -0.44
VPS50-203ENST00000436177 SUPT6HQ7KZ85 1726 aaKnown RBP12.29□□□□□ -0.44
VPS50-203ENST00000436177 PLXNC1O60486 1568 aa12.29□□□□□ -0.44
VPS50-203ENST00000436177 MROH2AA6NES4 1674 aa12.29□□□□□ -0.44
VPS50-203ENST00000436177 NCOA2Q15596 1464 aa12.28□□□□□ -0.44
VPS50-203ENST00000436177 RTEL1-TNFRSF6BF6WH68 1400 aa12.28□□□□□ -0.44
VPS50-203ENST00000436177 NCOA1Q15788 1441 aa12.28□□□□□ -0.44
VPS50-203ENST00000436177 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.44
VPS50-203ENST00000436177 ADGBQ8N7X0 1667 aa12.26□□□□□ -0.45
VPS50-203ENST00000436177 ATXN8OSP0DMR3 200 aa12.26□□□□□ -0.45
VPS50-203ENST00000436177 RSPH4AQ5TD94 716 aa12.26□□□□□ -0.45
VPS50-203ENST00000436177 CAMSAP2Q08AD1 1489 aa12.26□□□□□ -0.45
VPS50-203ENST00000436177 MBD5Q9P267 1494 aa12.26□□□□□ -0.45
VPS50-203ENST00000436177 KIF3BO15066 747 aa12.25□□□□□ -0.45
VPS50-203ENST00000436177 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
VPS50-203ENST00000436177 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
VPS50-203ENST00000436177 DHX29Q7Z478 1369 aaKnown RBP12.25□□□□□ -0.45
VPS50-203ENST00000436177 VPS8Q8N3P4 1428 aa12.25□□□□□ -0.45
VPS50-203ENST00000436177 CLTCQ00610 1675 aaKnown RBP12.25□□□□□ -0.45
VPS50-203ENST00000436177 CAMSAP1Q5T5Y3 1602 aa12.24□□□□□ -0.45
VPS50-203ENST00000436177 STRCQ7RTU9 1775 aa12.24□□□□□ -0.45
VPS50-203ENST00000436177 PTPRKQ15262 1439 aa12.23□□□□□ -0.45
VPS50-203ENST00000436177 PKD2Q13563 968 aa12.22□□□□□ -0.45
VPS50-203ENST00000436177 MYO3AQ8NEV4 1616 aa12.22□□□□□ -0.45
VPS50-203ENST00000436177 CEP170BQ9Y4F5 1589 aaPredicted RBP12.22□□□□□ -0.45
VPS50-203ENST00000436177 NCKAP5LQ9HCH0 1330 aa12.21□□□□□ -0.45
VPS50-203ENST00000436177 WASHC2CQ9Y4E1 1318 aa12.21□□□□□ -0.45
VPS50-203ENST00000436177 KDM5DQ9BY66 1539 aa12.21□□□□□ -0.46
VPS50-203ENST00000436177 FAM135AQ9P2D6 1515 aa12.21□□□□□ -0.46
VPS50-203ENST00000436177 PLA2R1Q13018 1463 aa12.21□□□□□ -0.46
VPS50-203ENST00000436177 LRRC9Q6ZRR7 1453 aa12.21□□□□□ -0.46
VPS50-203ENST00000436177 TNRQ92752 1358 aa12.2□□□□□ -0.46
VPS50-203ENST00000436177 LOC105371045A0A1W2PR82 267 aa12.2□□□□□ -0.46
VPS50-203ENST00000436177 PITPNM1O00562 1244 aa12.2□□□□□ -0.46
VPS50-203ENST00000436177 PIP4P2Q8N4L2 257 aa12.2□□□□□ -0.46
VPS50-203ENST00000436177 A2ML1A8K2U0 1454 aa12.19□□□□□ -0.46
VPS50-203ENST00000436177 ZNF142P52746 1687 aaPredicted RBP12.19□□□□□ -0.46
VPS50-203ENST00000436177 ARHGEF5Q12774 1597 aa12.18□□□□□ -0.46
VPS50-203ENST00000436177 IQSEC2Q5JU85 1478 aa12.18□□□□□ -0.46
VPS50-203ENST00000436177 PZPP20742 1482 aa12.17□□□□□ -0.46
VPS50-203ENST00000436177 ZNF335Q9H4Z2 1342 aaPredicted RBP12.16□□□□□ -0.46
VPS50-203ENST00000436177 TCOF1Q13428 1488 aaKnown RBP12.16□□□□□ -0.46
VPS50-203ENST00000436177 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
VPS50-203ENST00000436177 MAP3K1Q13233 1512 aa12.16□□□□□ -0.46
VPS50-203ENST00000436177 LTBP4Q8N2S1 1624 aa12.15□□□□□ -0.46
VPS50-203ENST00000436177 MIA2Q96PC5 1412 aa12.15□□□□□ -0.46
VPS50-203ENST00000436177 FBXO31Q5XUX0 539 aaPredicted RBP12.15□□□□□ -0.46
VPS50-203ENST00000436177 DISP3Q9P2K9 1392 aa12.15□□□□□ -0.46
VPS50-203ENST00000436177 UBAP1LF5GYI3 381 aa12.14□□□□□ -0.47
VPS50-203ENST00000436177 KANK4Q5T7N3 995 aaPredicted RBP12.13□□□□□ -0.47
VPS50-203ENST00000436177 THEMISQ8N1K5 641 aaPredicted RBP12.13□□□□□ -0.47
VPS50-203ENST00000436177 NLRP1Q9C000 1473 aa12.13□□□□□ -0.47
VPS50-203ENST00000436177 ANKLE2Q86XL3 938 aa12.12□□□□□ -0.47
VPS50-203ENST00000436177 MAST1Q9Y2H9 1570 aa12.11□□□□□ -0.47
VPS50-203ENST00000436177 DNMT1P26358 1616 aaKnown RBP12.11□□□□□ -0.47
VPS50-203ENST00000436177 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS50-203ENST00000436177 KIF15Q9NS87 1388 aa12.1□□□□□ -0.47
VPS50-203ENST00000436177 UGGT1Q9NYU2 1555 aa12.09□□□□□ -0.47
VPS50-203ENST00000436177 RNF17Q9BXT8 1623 aaKnown RBP12.09□□□□□ -0.47
VPS50-203ENST00000436177 SP7Q8TDD2 431 aaPredicted RBP12.09□□□□□ -0.47
VPS50-203ENST00000436177 ABCC3O15438 1527 aa12.09□□□□□ -0.47
VPS50-203ENST00000436177 DUOX2Q9NRD8 1548 aa12.09□□□□□ -0.47
VPS50-203ENST00000436177 EIF2AK4Q9P2K8 1649 aaKnown RBP12.08□□□□□ -0.48
VPS50-203ENST00000436177 ZC3H13Q5T200 1668 aaKnown RBP12.08□□□□□ -0.48
VPS50-203ENST00000436177 SPDYE2BA6NHP3 402 aa12.08□□□□□ -0.48
VPS50-203ENST00000436177 SPDYE6P0CI01 402 aa12.08□□□□□ -0.48
VPS50-203ENST00000436177 SPDYE2Q495Y8 402 aa12.08□□□□□ -0.48
VPS50-203ENST00000436177 SHANK2Q9UPX8 1470 aa12.08□□□□□ -0.48
VPS50-203ENST00000436177 KANK1Q14678 1352 aa12.07□□□□□ -0.48
VPS50-203ENST00000436177 NPHP4O75161 1426 aaPredicted RBP12.07□□□□□ -0.48
VPS50-203ENST00000436177 FXR2P51116 673 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS50-203ENST00000436177 CPS1P31327 1500 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 SPATA31D1Q6ZQQ2 1576 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 ERBINQ96RT1 1412 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 HAX1O00165 279 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 MKRN4PQ13434 485 aaPredicted RBP12.06□□□□□ -0.48
VPS50-203ENST00000436177 RRP7BPQ9NSQ0 103 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 ERVK-7P63135 1459 aa12.06□□□□□ -0.48
VPS50-203ENST00000436177 POLR1AO95602 1720 aaPredicted RBP12.06□□□□□ -0.48
VPS50-203ENST00000436177 FGD6Q6ZV73 1430 aa12.05□□□□□ -0.48
VPS50-203ENST00000436177 TOM1O60784 492 aa12.05□□□□□ -0.48
VPS50-203ENST00000436177 NEURL4Q96JN8 1562 aa12.05□□□□□ -0.48
VPS50-203ENST00000436177 ANKRD30AQ9BXX3 1397 aa12.05□□□□□ -0.48
VPS50-203ENST00000436177 PIP4K2BP78356 416 aa12.04□□□□□ -0.48
VPS50-203ENST00000436177 PTPN23Q9H3S7 1636 aa12.04□□□□□ -0.48
VPS50-203ENST00000436177 ABCC5O15440 1437 aa12.03□□□□□ -0.48
VPS50-203ENST00000436177 DAPK1P53355 1430 aa12.03□□□□□ -0.48
VPS50-203ENST00000436177 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
VPS50-203ENST00000436177 DEPDC5O75140 1603 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms