RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 RIMBP2O15034 1052 aa11.67□□□□□ -0.54
USP54-206ENST00000433394 PCDHGA4Q9Y5G9 962 aa11.67□□□□□ -0.54
USP54-206ENST00000433394 RBM33Q96EV2 1170 aaKnown RBP11.66□□□□□ -0.54
USP54-206ENST00000433394 CERKQ8TCT0 537 aa11.64□□□□□ -0.55
USP54-206ENST00000433394 DOK7Q18PE1 504 aa11.63□□□□□ -0.55
USP54-206ENST00000433394 PARP9Q8IXQ6 854 aa11.63□□□□□ -0.55
USP54-206ENST00000433394 JPH4Q96JJ6 628 aa11.63□□□□□ -0.55
USP54-206ENST00000433394 FECHP22830 423 aa11.62□□□□□ -0.55
USP54-206ENST00000433394 FAM117AQ9C073 453 aa11.62□□□□□ -0.55
USP54-206ENST00000433394 PCDH10Q9P2E7 1040 aa11.61□□□□□ -0.55
USP54-206ENST00000433394 PCDHGA10Q9Y5H3 936 aa11.61□□□□□ -0.55
USP54-206ENST00000433394 CLCN1P35523 988 aa11.6□□□□□ -0.55
USP54-206ENST00000433394 PRIM1P49642 420 aaKnown RBP11.59□□□□□ -0.55
USP54-206ENST00000433394 CDHR5Q9HBB8 845 aa11.58□□□□□ -0.56
USP54-206ENST00000433394 OATP04181 439 aa11.57□□□□□ -0.56
USP54-206ENST00000433394 GIGYF2Q6Y7W6 1299 aaKnown RBP11.57□□□□□ -0.56
USP54-206ENST00000433394 ZNF710Q8N1W2 664 aa11.56□□□□□ -0.56
USP54-206ENST00000433394 ZNF454Q8N9F8 522 aa11.56□□□□□ -0.56
USP54-206ENST00000433394 ZDHHC16Q969W1 377 aa11.56□□□□□ -0.56
USP54-206ENST00000433394 ZSWIM6Q9HCJ5 1215 aa11.56□□□□□ -0.56
USP54-206ENST00000433394 GPCPD1Q9NPB8 672 aa11.55□□□□□ -0.56
USP54-206ENST00000433394 FOSBP53539 338 aa11.54□□□□□ -0.56
USP54-206ENST00000433394 TSR1Q2NL82 804 aaKnown RBP11.54□□□□□ -0.56
USP54-206ENST00000433394 ARXQ96QS3 562 aa11.54□□□□□ -0.56
USP54-206ENST00000433394 GOPCQ9HD26 462 aa11.54□□□□□ -0.56
USP54-206ENST00000433394 NPDC1Q9NQX5 325 aaPredicted RBP11.54□□□□□ -0.56
USP54-206ENST00000433394 PCMTD1Q96MG8 357 aaPredicted RBP11.53□□□□□ -0.56
USP54-206ENST00000433394 C6orf132Q5T0Z8 1188 aa11.52□□□□□ -0.57
USP54-206ENST00000433394 ATP1B4Q9UN42 357 aaPredicted RBP11.52□□□□□ -0.57
USP54-206ENST00000433394 PSDA5PKW4 1024 aaPredicted RBP11.51□□□□□ -0.57
USP54-206ENST00000433394 MDM2Q00987 491 aaPredicted RBP11.51□□□□□ -0.57
USP54-206ENST00000433394 RSPH6AQ9H0K4 717 aa11.51□□□□□ -0.57
USP54-206ENST00000433394 RBM27Q9P2N5 1060 aaKnown RBP11.51□□□□□ -0.57
USP54-206ENST00000433394 PLEKHG3A1L390 1219 aa11.5□□□□□ -0.57
USP54-206ENST00000433394 NUDT7P0C024 238 aa11.5□□□□□ -0.57
USP54-206ENST00000433394 FLIIQ13045 1269 aa11.49□□□□□ -0.57
USP54-206ENST00000433394 ARSIQ5FYB1 569 aa11.48□□□□□ -0.57
USP54-206ENST00000433394 PPP4R3BQ5MIZ7 849 aa11.48□□□□□ -0.57
USP54-206ENST00000433394 ST18O60284 1047 aa11.47□□□□□ -0.57
USP54-206ENST00000433394 PADI6Q6TGC4 694 aa11.47□□□□□ -0.57
USP54-206ENST00000433394 RBM46Q8TBY0 533 aaKnown RBP11.47□□□□□ -0.57
USP54-206ENST00000433394 SNPHO15079 494 aa11.46□□□□□ -0.57
USP54-206ENST00000433394 MS4A1P11836 297 aa11.46□□□□□ -0.57
USP54-206ENST00000433394 SSTR3P32745 418 aaPredicted RBP11.46□□□□□ -0.57
USP54-206ENST00000433394 METTL3Q86U44 580 aaKnown RBP11.46□□□□□ -0.57
USP54-206ENST00000433394 KDM4FA0A1W2PPD8 638 aa11.45□□□□□ -0.58
USP54-206ENST00000433394 ZMYND15Q9H091 742 aa11.45□□□□□ -0.58
USP54-206ENST00000433394 SUPT5HO00267 1087 aaKnown RBP11.44□□□□□ -0.58
USP54-206ENST00000433394 PRSS12P56730 875 aa11.43□□□□□ -0.58
USP54-206ENST00000433394 DIXDC1Q155Q3 683 aa11.43□□□□□ -0.58
USP54-206ENST00000433394 SH3D19Q5HYK7 790 aa11.43□□□□□ -0.58
USP54-206ENST00000433394 KCNH8Q96L42 1107 aa11.43□□□□□ -0.58
USP54-206ENST00000433394 CDAN1Q8IWY9 1227 aa11.42□□□□□ -0.58
USP54-206ENST00000433394 BEGAINQ9BUH8 593 aa11.42□□□□□ -0.58
USP54-206ENST00000433394 ADAM33Q9BZ11 813 aa11.42□□□□□ -0.58
USP54-206ENST00000433394 ADGRG1Q9Y653 693 aa11.42□□□□□ -0.58
USP54-206ENST00000433394 HOMEZQ8IX15 550 aa11.41□□□□□ -0.58
USP54-206ENST00000433394 PXYLP1Q8TE99 480 aa11.41□□□□□ -0.58
USP54-206ENST00000433394 CDCA7LQ96GN5 454 aa11.41□□□□□ -0.58
USP54-206ENST00000433394 TMUB1Q9BVT8 246 aa11.41□□□□□ -0.58
USP54-206ENST00000433394 HOXB3P14651 431 aaPredicted RBP11.4□□□□□ -0.58
USP54-206ENST00000433394 PTPREP23469 700 aa11.4□□□□□ -0.58
USP54-206ENST00000433394 KHSRPQ92945 711 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP54-206ENST00000433394 REPIN1Q9BWE0 567 aaKnown RBP11.4□□□□□ -0.58
USP54-206ENST00000433394 FAM161AQ3B820 660 aa11.39□□□□□ -0.59
USP54-206ENST00000433394 GPR153Q6NV75 609 aa11.39□□□□□ -0.59
USP54-206ENST00000433394 FAM217BQ9NTX9 383 aaPredicted RBP11.39□□□□□ -0.59
USP54-206ENST00000433394 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.38□□□□□ -0.59
USP54-206ENST00000433394 SKIV2LQ15477 1246 aaKnown RBP11.38□□□□□ -0.59
USP54-206ENST00000433394 PHOX2BQ99453 314 aa11.38□□□□□ -0.59
USP54-206ENST00000433394 LHX6Q9UPM6 363 aa11.38□□□□□ -0.59
USP54-206ENST00000433394 BCL2L12Q9HB09 334 aa11.37□□□□□ -0.59
USP54-206ENST00000433394 NBPF26B4DH59 902 aa11.36□□□□□ -0.59
USP54-206ENST00000433394 PPP1R3GB7ZBB8 358 aa11.36□□□□□ -0.59
USP54-206ENST00000433394 TTC13Q8NBP0 860 aa11.36□□□□□ -0.59
USP54-206ENST00000433394 PACS2Q86VP3 889 aa11.35□□□□□ -0.59
USP54-206ENST00000433394 SULF1Q8IWU6 871 aa11.35□□□□□ -0.59
USP54-206ENST00000433394 NLRP7Q8WX94 980 aa11.31□□□□□ -0.6
USP54-206ENST00000433394 UBTFP17480 764 aaKnown RBP11.3□□□□□ -0.6
USP54-206ENST00000433394 DNAJB2P25686 324 aa11.3□□□□□ -0.6
USP54-206ENST00000433394 RSPH4AQ5TD94 716 aa11.3□□□□□ -0.6
USP54-206ENST00000433394 POLR3EQ9NVU0 708 aa11.3□□□□□ -0.6
USP54-206ENST00000433394 RCCD1A6NED2 376 aa11.29□□□□□ -0.6
USP54-206ENST00000433394 MARVELD3Q96A59 401 aa11.29□□□□□ -0.6
USP54-206ENST00000433394 HOXB1P14653 301 aaPredicted RBP11.28□□□□□ -0.6
USP54-206ENST00000433394 CLK2P49760 499 aaKnown RBP11.28□□□□□ -0.6
USP54-206ENST00000433394 NUTM1Q86Y26 1132 aa11.28□□□□□ -0.6
USP54-206ENST00000433394 PNMA3Q9UL41 463 aa11.28□□□□□ -0.6
USP54-206ENST00000433394 TRIM6-TRIM34B2RNG4 842 aa11.27□□□□□ -0.61
USP54-206ENST00000433394 COL9A1P20849 921 aa11.27□□□□□ -0.61
USP54-206ENST00000433394 NUDT18Q6ZVK8 323 aa11.27□□□□□ -0.61
USP54-206ENST00000433394 RAD21O60216 631 aa11.26□□□□□ -0.61
USP54-206ENST00000433394 SLC4A3P48751 1232 aa11.26□□□□□ -0.61
USP54-206ENST00000433394 MYSM1Q5VVJ2 828 aa11.26□□□□□ -0.61
USP54-206ENST00000433394 TBC1D2Q9BYX2 928 aa11.26□□□□□ -0.61
USP54-206ENST00000433394 ONECUT3O60422 494 aaPredicted RBP11.25□□□□□ -0.61
USP54-206ENST00000433394 TATDN2Q93075 761 aa11.25□□□□□ -0.61
USP54-206ENST00000433394 DDX11L8A8MPP1 907 aa11.24□□□□□ -0.61
USP54-206ENST00000433394 HDGFP51858 240 aaKnown RBP11.24□□□□□ -0.61
USP54-206ENST00000433394 KCNK17Q96T54 332 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms