RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 EVI5O60447 810 aa7.51□□□□□ -1.21
HMGB3-203ENST00000430118 SLC34A2O95436 690 aa7.51□□□□□ -1.21
HMGB3-203ENST00000430118 UPF1Q92900 1129 aaKnown RBP eCLIP7.51□□□□□ -1.21
HMGB3-203ENST00000430118 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.51□□□□□ -1.21
HMGB3-203ENST00000430118 TTLL12Q14166 644 aaPredicted RBP7.5□□□□□ -1.21
HMGB3-203ENST00000430118 DDX12PQ92771 950 aa7.5□□□□□ -1.21
HMGB3-203ENST00000430118 EPAS1Q99814 870 aa7.5□□□□□ -1.21
HMGB3-203ENST00000430118 ANO8Q9HCE9 1232 aaPredicted RBP7.5□□□□□ -1.21
HMGB3-203ENST00000430118 NACADO15069 1562 aa7.49□□□□□ -1.21
HMGB3-203ENST00000430118 ST18O60284 1047 aa7.48□□□□□ -1.21
HMGB3-203ENST00000430118 ONECUT3O60422 494 aaPredicted RBP7.48□□□□□ -1.21
HMGB3-203ENST00000430118 PHF14O94880 888 aa7.48□□□□□ -1.21
HMGB3-203ENST00000430118 CLCN1P35523 988 aa7.48□□□□□ -1.21
HMGB3-203ENST00000430118 TMEM92Q6UXU6 159 aa7.48□□□□□ -1.21
HMGB3-203ENST00000430118 GIGYF2Q6Y7W6 1299 aaKnown RBP7.48□□□□□ -1.21
HMGB3-203ENST00000430118 FECHP22830 423 aa7.47□□□□□ -1.21
HMGB3-203ENST00000430118 EN1Q05925 392 aaPredicted RBP7.47□□□□□ -1.21
HMGB3-203ENST00000430118 PCMTD1Q96MG8 357 aaPredicted RBP7.47□□□□□ -1.21
HMGB3-203ENST00000430118 A6NJR5 290 aa7.46□□□□□ -1.22
HMGB3-203ENST00000430118 SH3D19Q5HYK7 790 aa7.46□□□□□ -1.22
HMGB3-203ENST00000430118 TMUB1Q9BVT8 246 aa7.46□□□□□ -1.22
HMGB3-203ENST00000430118 SNPHO15079 494 aa7.45□□□□□ -1.22
HMGB3-203ENST00000430118 C3orf67Q6ZVT6 689 aa7.45□□□□□ -1.22
HMGB3-203ENST00000430118 PRIM1P49642 420 aaKnown RBP7.44□□□□□ -1.22
HMGB3-203ENST00000430118 GPCPD1Q9NPB8 672 aa7.44□□□□□ -1.22
HMGB3-203ENST00000430118 MS4A1P11836 297 aa7.43□□□□□ -1.22
HMGB3-203ENST00000430118 CERKQ8TCT0 537 aa7.43□□□□□ -1.22
HMGB3-203ENST00000430118 FBXW7Q969H0 707 aa7.43□□□□□ -1.22
HMGB3-203ENST00000430118 CDAN1Q8IWY9 1227 aa7.42□□□□□ -1.22
HMGB3-203ENST00000430118 NPDC1Q9NQX5 325 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-203ENST00000430118 SKIV2LQ15477 1246 aaKnown RBP7.41□□□□□ -1.22
HMGB3-203ENST00000430118 TYW1BQ6NUM6 668 aa7.41□□□□□ -1.22
HMGB3-203ENST00000430118 RBM27Q9P2N5 1060 aaKnown RBP7.41□□□□□ -1.22
HMGB3-203ENST00000430118 MAP3K7O43318 606 aa7.4□□□□□ -1.22
HMGB3-203ENST00000430118 OATP04181 439 aa7.4□□□□□ -1.22
HMGB3-203ENST00000430118 UBTFP17480 764 aaKnown RBP7.4□□□□□ -1.22
HMGB3-203ENST00000430118 JPH4Q96JJ6 628 aa7.39□□□□□ -1.23
HMGB3-203ENST00000430118 REPIN1Q9BWE0 567 aaKnown RBP7.39□□□□□ -1.23
HMGB3-203ENST00000430118 MCM6Q14566 821 aa7.38□□□□□ -1.23
HMGB3-203ENST00000430118 DIXDC1Q155Q3 683 aa7.38□□□□□ -1.23
HMGB3-203ENST00000430118 C1orf115Q9H7X2 142 aa7.38□□□□□ -1.23
HMGB3-203ENST00000430118 SSTR3P32745 418 aaPredicted RBP7.37□□□□□ -1.23
HMGB3-203ENST00000430118 CDHR5Q9HBB8 845 aa7.37□□□□□ -1.23
HMGB3-203ENST00000430118 PCDHGA10Q9Y5H3 936 aa7.37□□□□□ -1.23
HMGB3-203ENST00000430118 APBB1O00213 710 aa7.36□□□□□ -1.23
HMGB3-203ENST00000430118 TRAK2O60296 914 aa7.36□□□□□ -1.23
HMGB3-203ENST00000430118 MDM2Q00987 491 aaPredicted RBP7.36□□□□□ -1.23
HMGB3-203ENST00000430118 FAM217BQ9NTX9 383 aaPredicted RBP7.36□□□□□ -1.23
HMGB3-203ENST00000430118 SHROOM4Q9ULL8 1493 aa7.36□□□□□ -1.23
HMGB3-203ENST00000430118 METTL3Q86U44 580 aaKnown RBP7.35□□□□□ -1.23
HMGB3-203ENST00000430118 MARVELD3Q96A59 401 aa7.35□□□□□ -1.23
HMGB3-203ENST00000430118 BEGAINQ9BUH8 593 aa7.34□□□□□ -1.23
HMGB3-203ENST00000430118 PODXL2Q9NZ53 605 aa7.34□□□□□ -1.23
HMGB3-203ENST00000430118 PCDHGA4Q9Y5G9 962 aa7.34□□□□□ -1.23
HMGB3-203ENST00000430118 UNC13AQ9UPW8 1703 aa7.34□□□□□ -1.23
HMGB3-203ENST00000430118 KDM4FA0A1W2PPD8 638 aa7.33□□□□□ -1.24
HMGB3-203ENST00000430118 SPDYE5A6NIY4 337 aa7.33□□□□□ -1.24
HMGB3-203ENST00000430118 TTC13Q8NBP0 860 aa7.33□□□□□ -1.24
HMGB3-203ENST00000430118 BANK1Q8NDB2 785 aa7.33□□□□□ -1.24
HMGB3-203ENST00000430118 PXYLP1Q8TE99 480 aa7.33□□□□□ -1.24
HMGB3-203ENST00000430118 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.33□□□□□ -1.24
HMGB3-203ENST00000430118 CECR2Q9BXF3 1484 aa7.32□□□□□ -1.24
HMGB3-203ENST00000430118 FOSBP53539 338 aa7.32□□□□□ -1.24
HMGB3-203ENST00000430118 TSR1Q2NL82 804 aaKnown RBP7.32□□□□□ -1.24
HMGB3-203ENST00000430118 PHOX2BQ99453 314 aa7.32□□□□□ -1.24
HMGB3-203ENST00000430118 ADGRG1Q9Y653 693 aa7.32□□□□□ -1.24
HMGB3-203ENST00000430118 SOCS7O14512 581 aa7.31□□□□□ -1.24
HMGB3-203ENST00000430118 RAD21O60216 631 aa7.31□□□□□ -1.24
HMGB3-203ENST00000430118 PROSER2Q86WR7 435 aaPredicted RBP7.31□□□□□ -1.24
HMGB3-203ENST00000430118 CLUAP1Q96AJ1 413 aa7.31□□□□□ -1.24
HMGB3-203ENST00000430118 RBM33Q96EV2 1170 aaKnown RBP7.31□□□□□ -1.24
HMGB3-203ENST00000430118 TUSC1Q2TAM9 212 aa7.3□□□□□ -1.24
HMGB3-203ENST00000430118 C6orf132Q5T0Z8 1188 aa7.3□□□□□ -1.24
HMGB3-203ENST00000430118 ARID3AQ99856 593 aa7.3□□□□□ -1.24
HMGB3-203ENST00000430118 MYO15BQ96JP2 1530 aa7.3□□□□□ -1.24
HMGB3-203ENST00000430118 BICRAQ9NZM4 1560 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 ARID3CA6NKF2 412 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 CLK2P49760 499 aaKnown RBP7.29□□□□□ -1.24
HMGB3-203ENST00000430118 EMP3P54852 163 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 MYSM1Q5VVJ2 828 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 PADI6Q6TGC4 694 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 FNBP4Q8N3X1 1017 aaPredicted RBP7.29□□□□□ -1.24
HMGB3-203ENST00000430118 RBM46Q8TBY0 533 aaKnown RBP7.29□□□□□ -1.24
HMGB3-203ENST00000430118 ZDHHC16Q969W1 377 aa7.29□□□□□ -1.24
HMGB3-203ENST00000430118 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.28□□□□□ -1.24
HMGB3-203ENST00000430118 TMEM259Q4ZIN3 620 aa7.28□□□□□ -1.24
HMGB3-203ENST00000430118 CCDC82Q8N4S0 544 aa7.28□□□□□ -1.24
HMGB3-203ENST00000430118 ZSWIM6Q9HCJ5 1215 aa7.28□□□□□ -1.24
HMGB3-203ENST00000430118 SERPINA10Q9UK55 444 aa7.28□□□□□ -1.24
HMGB3-203ENST00000430118 CC2D2AQ9P2K1 1620 aa7.27□□□□□ -1.25
HMGB3-203ENST00000430118 PPP2R2DQ66LE6 453 aa7.27□□□□□ -1.25
HMGB3-203ENST00000430118 FAM205CA6NFA0 338 aa7.26□□□□□ -1.25
HMGB3-203ENST00000430118 PDIA4P13667 645 aaKnown RBP7.26□□□□□ -1.25
HMGB3-203ENST00000430118 HOXB3P14651 431 aaPredicted RBP7.26□□□□□ -1.25
HMGB3-203ENST00000430118 GJA5P36382 358 aa7.26□□□□□ -1.25
HMGB3-203ENST00000430118 PRSS12P56730 875 aa7.26□□□□□ -1.25
HMGB3-203ENST00000430118 HS3ST6Q96QI5 342 aa7.26□□□□□ -1.25
HMGB3-203ENST00000430118 TRIM26Q12899 539 aaPredicted RBP7.25□□□□□ -1.25
HMGB3-203ENST00000430118 DOK7Q18PE1 504 aa7.25□□□□□ -1.25
HMGB3-203ENST00000430118 SULF1Q8IWU6 871 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms