RNA–Protein interactions for RNA: ENST00000423271.7

USB1-202, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,217 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-202ENST00000423271 FAM135AQ9P2D6 1515 aa23.78■■□□□ 1.4
USB1-202ENST00000423271 CAMSAP1Q5T5Y3 1602 aa23.77■■□□□ 1.4
USB1-202ENST00000423271 FGD6Q6ZV73 1430 aa23.77■■□□□ 1.4
USB1-202ENST00000423271 CEP170BQ9Y4F5 1589 aaPredicted RBP23.77■■□□□ 1.4
USB1-202ENST00000423271 RNF17Q9BXT8 1623 aaKnown RBP23.77■■□□□ 1.4
USB1-202ENST00000423271 ABCC5O15440 1437 aa23.76■■□□□ 1.39
USB1-202ENST00000423271 TCOF1Q13428 1488 aaKnown RBP23.75■■□□□ 1.39
USB1-202ENST00000423271 EIF2AK4Q9P2K8 1649 aaKnown RBP23.74■■□□□ 1.39
USB1-202ENST00000423271 DMRT2Q9Y5R5 561 aa23.74■■□□□ 1.39
USB1-202ENST00000423271 SHANK2Q9UPX8 1470 aa23.74■■□□□ 1.39
USB1-202ENST00000423271 WASHC2CQ9Y4E1 1318 aa23.73■■□□□ 1.39
USB1-202ENST00000423271 PTPRTO14522 1441 aa23.73■■□□□ 1.39
USB1-202ENST00000423271 PZPP20742 1482 aa23.73■■□□□ 1.39
USB1-202ENST00000423271 FBXO31Q5XUX0 539 aaPredicted RBP23.72■■□□□ 1.39
USB1-202ENST00000423271 DNMT1P26358 1616 aaKnown RBP23.72■■□□□ 1.39
USB1-202ENST00000423271 MROH1Q8NDA8 1641 aa23.71■■□□□ 1.39
USB1-202ENST00000423271 DAPK1P53355 1430 aa23.71■■□□□ 1.39
USB1-202ENST00000423271 DUOX2Q9NRD8 1548 aa23.7■■□□□ 1.38
USB1-202ENST00000423271 CERKQ8TCT0 537 aa23.7■■□□□ 1.38
USB1-202ENST00000423271 ABCC3O15438 1527 aa23.69■■□□□ 1.38
USB1-202ENST00000423271 A2ML1A8K2U0 1454 aa23.68■■□□□ 1.38
USB1-202ENST00000423271 TNRQ92752 1358 aa23.68■■□□□ 1.38
USB1-202ENST00000423271 KIF15Q9NS87 1388 aa23.68■■□□□ 1.38
USB1-202ENST00000423271 PLA2R1Q13018 1463 aa23.67■■□□□ 1.38
USB1-202ENST00000423271 ZC3H13Q5T200 1668 aaKnown RBP23.67■■□□□ 1.38
USB1-202ENST00000423271 NCKAP5LQ9HCH0 1330 aa23.66■■□□□ 1.38
USB1-202ENST00000423271 CEP152O94986 1710 aa23.64■■□□□ 1.38
USB1-202ENST00000423271 RRP7BPQ9NSQ0 103 aa23.64■■□□□ 1.37
USB1-202ENST00000423271 ERBINQ96RT1 1412 aa23.62■■□□□ 1.37
USB1-202ENST00000423271 PRDM15P57071 1507 aaPredicted RBP23.6■■□□□ 1.37
USB1-202ENST00000423271 LTBP4Q8N2S1 1624 aa23.6■■□□□ 1.37
USB1-202ENST00000423271 CHIC2Q9UKJ5 165 aa23.6■■□□□ 1.37
USB1-202ENST00000423271 SPATA31D1Q6ZQQ2 1576 aa23.58■■□□□ 1.37
USB1-202ENST00000423271 PKD2Q13563 968 aa23.58■■□□□ 1.37
USB1-202ENST00000423271 NLRP1Q9C000 1473 aa23.57■■□□□ 1.36
USB1-202ENST00000423271 FAM50AQ14320 339 aaKnown RBP23.57■■□□□ 1.36
USB1-202ENST00000423271 DEPDC5O75140 1603 aa23.57■■□□□ 1.36
USB1-202ENST00000423271 ERVK-7P63135 1459 aa23.56■■□□□ 1.36
USB1-202ENST00000423271 ANKRD30AQ9BXX3 1397 aa23.56■■□□□ 1.36
USB1-202ENST00000423271 POLR1AO95602 1720 aaPredicted RBP23.54■■□□□ 1.36
USB1-202ENST00000423271 CFAP65Q6ZU64 1925 aaKnown RBP23.54■■□□□ 1.36
USB1-202ENST00000423271 ADGRL2O95490 1459 aa23.54■■□□□ 1.36
USB1-202ENST00000423271 NEURL4Q96JN8 1562 aa23.53■■□□□ 1.36
USB1-202ENST00000423271 UGGT1Q9NYU2 1555 aa23.53■■□□□ 1.36
USB1-202ENST00000423271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.52■■□□□ 1.36
USB1-202ENST00000423271 ZNF335Q9H4Z2 1342 aaPredicted RBP23.52■■□□□ 1.36
USB1-202ENST00000423271 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.52■■□□□ 1.36
USB1-202ENST00000423271 ARHGAP31Q2M1Z3 1444 aa23.49■■□□□ 1.35
USB1-202ENST00000423271 VWDEQ8N2E2 1590 aa23.47■■□□□ 1.35
USB1-202ENST00000423271 THEMISQ8N1K5 641 aaPredicted RBP23.46■■□□□ 1.35
USB1-202ENST00000423271 KANK1Q14678 1352 aa23.45■■□□□ 1.34
USB1-202ENST00000423271 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
USB1-202ENST00000423271 LMTK2Q8IWU2 1503 aa23.44■■□□□ 1.34
USB1-202ENST00000423271 IQSEC2Q5JU85 1478 aa23.43■■□□□ 1.34
USB1-202ENST00000423271 UBR1Q8IWV7 1749 aa23.43■■□□□ 1.34
USB1-202ENST00000423271 ANKLE2Q86XL3 938 aa23.42■■□□□ 1.34
USB1-202ENST00000423271 ANKRD50Q9ULJ7 1429 aa23.42■■□□□ 1.34
USB1-202ENST00000423271 NPHP4O75161 1426 aaPredicted RBP23.4■■□□□ 1.34
USB1-202ENST00000423271 EFCAB6Q5THR3 1501 aa23.39■■□□□ 1.34
USB1-202ENST00000423271 MED14O60244 1454 aa23.39■■□□□ 1.34
USB1-202ENST00000423271 IQGAP1P46940 1657 aa23.37■■□□□ 1.33
USB1-202ENST00000423271 PIK3C2BO00750 1634 aa23.37■■□□□ 1.33
USB1-202ENST00000423271 SYNMO15061 1565 aa23.35■■□□□ 1.33
USB1-202ENST00000423271 ARHGAP23Q9P227 1491 aa23.33■■□□□ 1.33
USB1-202ENST00000423271 ROCK1Q13464 1354 aa23.33■■□□□ 1.33
USB1-202ENST00000423271 UNC13BO14795 1591 aa23.32■■□□□ 1.32
USB1-202ENST00000423271 SLIT1O75093 1534 aa23.32■■□□□ 1.32
USB1-202ENST00000423271 NOS1P29475 1434 aa23.32■■□□□ 1.32
USB1-202ENST00000423271 SCAF11Q99590 1463 aaKnown RBP23.31■■□□□ 1.32
USB1-202ENST00000423271 ITGAEP38570 1179 aa23.31■■□□□ 1.32
USB1-202ENST00000423271 CPS1P31327 1500 aa23.3■■□□□ 1.32
USB1-202ENST00000423271 TET3O43151 1660 aa23.29■■□□□ 1.32
USB1-202ENST00000423271 LTKP29376 864 aa23.28■■□□□ 1.32
USB1-202ENST00000423271 IDI1Q13907 227 aa23.28■■□□□ 1.32
USB1-202ENST00000423271 KDM5AP29375 1690 aaKnown RBP23.26■■□□□ 1.31
USB1-202ENST00000423271 RPRD2Q5VT52 1461 aaKnown RBP23.26■■□□□ 1.31
USB1-202ENST00000423271 UBAP1LF5GYI3 381 aa23.26■■□□□ 1.31
USB1-202ENST00000423271 STRCP1A6NGW2 1772 aa23.26■■□□□ 1.31
USB1-202ENST00000423271 GCC2Q8IWJ2 1684 aa23.25■■□□□ 1.31
USB1-202ENST00000423271 TXNDC2Q86VQ3 553 aa23.25■■□□□ 1.31
USB1-202ENST00000423271 TMEM2Q9UHN6 1383 aa23.25■■□□□ 1.31
USB1-202ENST00000423271 ADGRB3O60242 1522 aa23.24■■□□□ 1.31
USB1-202ENST00000423271 STAG3Q9UJ98 1225 aa23.24■■□□□ 1.31
USB1-202ENST00000423271 RRBP1Q9P2E9 1410 aaKnown RBP23.23■■□□□ 1.31
USB1-202ENST00000423271 IQGAP3Q86VI3 1631 aa23.22■■□□□ 1.31
USB1-202ENST00000423271 E9PCH4 1651 aa23.21■■□□□ 1.31
USB1-202ENST00000423271 EID1Q9Y6B2 187 aa23.2■■□□□ 1.3
USB1-202ENST00000423271 SLC52A1Q9NWF4 448 aa23.18■■□□□ 1.3
USB1-202ENST00000423271 MYO5BQ9ULV0 1848 aa23.17■■□□□ 1.3
USB1-202ENST00000423271 LRRC7Q96NW7 1537 aa23.17■■□□□ 1.3
USB1-202ENST00000423271 NUP155O75694 1391 aa23.16■■□□□ 1.3
USB1-202ENST00000423271 TMEM131LA2VDJ0 1609 aa23.13■■□□□ 1.29
USB1-202ENST00000423271 ALKQ9UM73 1620 aa23.13■■□□□ 1.29
USB1-202ENST00000423271 PIP4K2BP78356 416 aa23.11■■□□□ 1.29
USB1-202ENST00000423271 SCAF1Q9H7N4 1312 aaKnown RBP23.1■■□□□ 1.29
USB1-202ENST00000423271 ZFYVE9O95405 1425 aa23.1■■□□□ 1.29
USB1-202ENST00000423271 TOM1O60784 492 aa23.09■■□□□ 1.29
USB1-202ENST00000423271 SLC26A8Q96RN1 970 aa23.08■■□□□ 1.29
USB1-202ENST00000423271 NAIPQ13075 1403 aa23.08■■□□□ 1.28
USB1-202ENST00000423271 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms