RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 PLCH2O75038 1416 aa13.01□□□□□ -0.33
CMSS1-201ENST00000421999 AKNAQ7Z591 1439 aa13.01□□□□□ -0.33
CMSS1-201ENST00000421999 CHD1O14646 1710 aa13□□□□□ -0.33
CMSS1-201ENST00000421999 CC2D1BQ5T0F9 858 aaKnown RBP13□□□□□ -0.33
CMSS1-201ENST00000421999 AEBP2Q6ZN18 517 aaPredicted RBP13□□□□□ -0.33
CMSS1-201ENST00000421999 VGFO15240 615 aaPredicted RBP12.99□□□□□ -0.33
CMSS1-201ENST00000421999 CFAP53Q96M91 514 aa12.99□□□□□ -0.33
CMSS1-201ENST00000421999 GTF3C3Q9Y5Q9 886 aa12.98□□□□□ -0.33
CMSS1-201ENST00000421999 KIAA1107Q9UPP5 1409 aa12.98□□□□□ -0.33
CMSS1-201ENST00000421999 CFAP43Q8NDM7 1665 aa12.96□□□□□ -0.33
CMSS1-201ENST00000421999 ARXQ96QS3 562 aa12.95□□□□□ -0.34
CMSS1-201ENST00000421999 NUTM2FA1L443 756 aa12.95□□□□□ -0.34
CMSS1-201ENST00000421999 PAK3O75914 559 aaPredicted RBP12.95□□□□□ -0.34
CMSS1-201ENST00000421999 DENND4BO75064 1496 aaPredicted RBP12.95□□□□□ -0.34
CMSS1-201ENST00000421999 MAGI3Q5TCQ9 1506 aa12.94□□□□□ -0.34
CMSS1-201ENST00000421999 ERCC6L2Q5T890 1561 aa12.94□□□□□ -0.34
CMSS1-201ENST00000421999 NEUROD2Q15784 382 aa12.94□□□□□ -0.34
CMSS1-201ENST00000421999 TRAPPC8Q9Y2L5 1435 aa12.94□□□□□ -0.34
CMSS1-201ENST00000421999 SYCP2Q9BX26 1530 aa12.93□□□□□ -0.34
CMSS1-201ENST00000421999 USP47Q96K76 1375 aa12.93□□□□□ -0.34
CMSS1-201ENST00000421999 NBPF8Q3BBV2 869 aa12.92□□□□□ -0.34
CMSS1-201ENST00000421999 U2SURPO15042 1029 aaKnown RBP12.91□□□□□ -0.34
CMSS1-201ENST00000421999 TMEM132EQ6IEE7 984 aa12.91□□□□□ -0.34
CMSS1-201ENST00000421999 CFAP70Q5T0N1 1121 aa12.91□□□□□ -0.34
CMSS1-201ENST00000421999 EIF3AQ14152 1382 aaKnown RBP12.91□□□□□ -0.34
CMSS1-201ENST00000421999 NUDCQ9Y266 331 aa12.9□□□□□ -0.34
CMSS1-201ENST00000421999 NBPF1Q3BBV0 1214 aa12.9□□□□□ -0.34
CMSS1-201ENST00000421999 ABCA8O94911 1581 aa12.89□□□□□ -0.35
CMSS1-201ENST00000421999 DHX29Q7Z478 1369 aaKnown RBP12.89□□□□□ -0.35
CMSS1-201ENST00000421999 ITSN2Q9NZM3 1697 aa12.88□□□□□ -0.35
CMSS1-201ENST00000421999 TCOF1Q13428 1488 aaKnown RBP12.88□□□□□ -0.35
CMSS1-201ENST00000421999 ANKRD30BQ9BXX2 1392 aa12.88□□□□□ -0.35
CMSS1-201ENST00000421999 MAPK8IP3Q9UPT6 1336 aa12.87□□□□□ -0.35
CMSS1-201ENST00000421999 SLC52A1Q9NWF4 448 aa12.87□□□□□ -0.35
CMSS1-201ENST00000421999 FBXO31Q5XUX0 539 aaPredicted RBP12.87□□□□□ -0.35
CMSS1-201ENST00000421999 HDGFL2Q7Z4V5 671 aaPredicted RBP12.87□□□□□ -0.35
CMSS1-201ENST00000421999 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
CMSS1-201ENST00000421999 STAC3Q96MF2 364 aa12.86□□□□□ -0.35
CMSS1-201ENST00000421999 MORC1Q86VD1 984 aa12.86□□□□□ -0.35
CMSS1-201ENST00000421999 LAS1LQ9Y4W2 734 aaKnown RBP12.86□□□□□ -0.35
CMSS1-201ENST00000421999 NGDNQ8NEJ9 315 aaKnown RBP12.85□□□□□ -0.35
CMSS1-201ENST00000421999 CEBPAP49715 358 aaPredicted RBP12.84□□□□□ -0.35
CMSS1-201ENST00000421999 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.84□□□□□ -0.35
CMSS1-201ENST00000421999 KDM5BQ9UGL1 1544 aa12.84□□□□□ -0.35
CMSS1-201ENST00000421999 ZNF518AQ6AHZ1 1483 aa12.84□□□□□ -0.35
CMSS1-201ENST00000421999 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.84□□□□□ -0.35
CMSS1-201ENST00000421999 PANK3Q9H999 370 aa12.83□□□□□ -0.36
CMSS1-201ENST00000421999 TXNDC2Q86VQ3 553 aa12.83□□□□□ -0.36
CMSS1-201ENST00000421999 CSB-PGBD3P0DP91 1061 aa12.83□□□□□ -0.36
CMSS1-201ENST00000421999 UHRF1BP1LA0JNW5 1464 aa12.83□□□□□ -0.36
CMSS1-201ENST00000421999 KTN1Q86UP2 1357 aaKnown RBP12.82□□□□□ -0.36
CMSS1-201ENST00000421999 TEX14Q8IWB6 1497 aa12.82□□□□□ -0.36
CMSS1-201ENST00000421999 CCDC9Q9Y3X0 531 aaKnown RBP12.81□□□□□ -0.36
CMSS1-201ENST00000421999 IDI1Q13907 227 aa12.81□□□□□ -0.36
CMSS1-201ENST00000421999 POGZQ7Z3K3 1410 aa12.81□□□□□ -0.36
CMSS1-201ENST00000421999 FKBP8Q14318 412 aa12.81□□□□□ -0.36
CMSS1-201ENST00000421999 CENPJQ9HC77 1338 aaPredicted RBP12.81□□□□□ -0.36
CMSS1-201ENST00000421999 ERBINQ96RT1 1412 aa12.81□□□□□ -0.36
CMSS1-201ENST00000421999 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.8□□□□□ -0.366e-6■■■■■ 38.2
CMSS1-201ENST00000421999 A2MP01023 1474 aa12.8□□□□□ -0.36
CMSS1-201ENST00000421999 KIF7Q2M1P5 1343 aa12.8□□□□□ -0.36
CMSS1-201ENST00000421999 ABCC10Q5T3U5 1492 aa12.8□□□□□ -0.36
CMSS1-201ENST00000421999 CCER2I3L3R5 266 aa12.8□□□□□ -0.36
CMSS1-201ENST00000421999 TERF2IPQ9NYB0 399 aa12.79□□□□□ -0.36
CMSS1-201ENST00000421999 EVC2Q86UK5 1308 aa12.79□□□□□ -0.36
CMSS1-201ENST00000421999 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.78□□□□□ -0.367e-7■■■■□ 21.3
CMSS1-201ENST00000421999 WASHC2AQ641Q2 1341 aa12.78□□□□□ -0.36
CMSS1-201ENST00000421999 DUOX2Q9NRD8 1548 aa12.77□□□□□ -0.36
CMSS1-201ENST00000421999 THEMISQ8N1K5 641 aaPredicted RBP12.77□□□□□ -0.36
CMSS1-201ENST00000421999 SLC26A8Q96RN1 970 aa12.77□□□□□ -0.37
CMSS1-201ENST00000421999 NPHP1O15259 732 aa12.76□□□□□ -0.37
CMSS1-201ENST00000421999 RALBP1Q15311 655 aa12.76□□□□□ -0.37
CMSS1-201ENST00000421999 CCDC7Q96M83 1385 aa12.76□□□□□ -0.37
CMSS1-201ENST00000421999 IRX6P78412 446 aaPredicted RBP12.76□□□□□ -0.37
CMSS1-201ENST00000421999 DNMT1P26358 1616 aaKnown RBP12.76□□□□□ -0.37
CMSS1-201ENST00000421999 SHANK2Q9UPX8 1470 aa12.75□□□□□ -0.37
CMSS1-201ENST00000421999 CLASP1Q7Z460 1538 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 RPRD2Q5VT52 1461 aaKnown RBP12.74□□□□□ -0.37
CMSS1-201ENST00000421999 PRKRIP1Q9H875 184 aaPredicted RBP12.74□□□□□ -0.37
CMSS1-201ENST00000421999 CABP2Q9NPB3 220 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 RTEL1-TNFRSF6BF6WH68 1400 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 ZCCHC11Q5TAX3 1644 aaKnown RBP12.74□□□□□ -0.37
CMSS1-201ENST00000421999 CCDC136Q96JN2 1154 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 PRAM1Q96QH2 718 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 MAPKBP1O60336 1514 aa12.74□□□□□ -0.37
CMSS1-201ENST00000421999 ADGRF5Q8IZF2 1346 aa12.73□□□□□ -0.37
CMSS1-201ENST00000421999 RPGRIP1LQ68CZ1 1315 aa12.73□□□□□ -0.37
CMSS1-201ENST00000421999 MYH16Q9H6N6 1097 aa12.73□□□□□ -0.37
CMSS1-201ENST00000421999 MBD5Q9P267 1494 aa12.73□□□□□ -0.37
CMSS1-201ENST00000421999 LTV1Q96GA3 475 aaPredicted RBP12.72□□□□□ -0.37
CMSS1-201ENST00000421999 TTC37Q6PGP7 1564 aa12.72□□□□□ -0.37
CMSS1-201ENST00000421999 PPP6R1Q9UPN7 881 aa12.71□□□□□ -0.37
CMSS1-201ENST00000421999 U2AF1L5P0DN76 240 aaPredicted RBP12.71□□□□□ -0.37
CMSS1-201ENST00000421999 U2AF1Q01081 240 aaKnown RBP eCLIP12.71□□□□□ -0.37
CMSS1-201ENST00000421999 NLRP13Q86W25 1043 aa12.71□□□□□ -0.37
CMSS1-201ENST00000421999 PNNQ9H307 717 aaKnown RBP12.71□□□□□ -0.38
CMSS1-201ENST00000421999 FAM135AQ9P2D6 1515 aa12.71□□□□□ -0.38
CMSS1-201ENST00000421999 ADGRL2O95490 1459 aa12.7□□□□□ -0.38
CMSS1-201ENST00000421999 AMPHP49418 695 aa12.69□□□□□ -0.38
CMSS1-201ENST00000421999 RTF1Q92541 710 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms