RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 KDM5DQ9BY66 1539 aa25.08■■□□□ 1.61
CCDC28B-202ENST00000421922 NUP155O75694 1391 aa25.08■■□□□ 1.61
CCDC28B-202ENST00000421922 SLC4A1APQ9BWU0 796 aaKnown RBP25.06■■□□□ 1.6
CCDC28B-202ENST00000421922 MPHOSPH9Q99550 1183 aa25.05■■□□□ 1.6
CCDC28B-202ENST00000421922 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.03■■□□□ 1.6
CCDC28B-202ENST00000421922 YEATS2Q9ULM3 1422 aa25.03■■□□□ 1.6
CCDC28B-202ENST00000421922 PZPP20742 1482 aa25.03■■□□□ 1.6
CCDC28B-202ENST00000421922 DEPDC5O75140 1603 aa25.02■■□□□ 1.6
CCDC28B-202ENST00000421922 IQGAP3Q86VI3 1631 aa25.02■■□□□ 1.6
CCDC28B-202ENST00000421922 ARHGEF40Q8TER5 1519 aa25.02■■□□□ 1.6
CCDC28B-202ENST00000421922 KANK1Q14678 1352 aa25.01■■□□□ 1.59
CCDC28B-202ENST00000421922 KIF3BO15066 747 aa25.01■■□□□ 1.59
CCDC28B-202ENST00000421922 FAM135AQ9P2D6 1515 aa25■■□□□ 1.59
CCDC28B-202ENST00000421922 BCORL1Q5H9F3 1711 aa24.99■■□□□ 1.59
CCDC28B-202ENST00000421922 ATP10AO60312 1499 aa24.98■■□□□ 1.59
CCDC28B-202ENST00000421922 RNF17Q9BXT8 1623 aaKnown RBP24.98■■□□□ 1.59
CCDC28B-202ENST00000421922 REREQ9P2R6 1566 aa24.96■■□□□ 1.59
CCDC28B-202ENST00000421922 PRDM15P57071 1507 aaPredicted RBP24.96■■□□□ 1.59
CCDC28B-202ENST00000421922 PKD2Q13563 968 aa24.93■■□□□ 1.58
CCDC28B-202ENST00000421922 MROH1Q8NDA8 1641 aa24.91■■□□□ 1.58
CCDC28B-202ENST00000421922 TET3O43151 1660 aa24.89■■□□□ 1.58
CCDC28B-202ENST00000421922 FOXD1Q16676 465 aa24.87■■□□□ 1.57
CCDC28B-202ENST00000421922 GGT6Q6P531 493 aa24.87■■□□□ 1.57
CCDC28B-202ENST00000421922 VWDEQ8N2E2 1590 aa24.87■■□□□ 1.57
CCDC28B-202ENST00000421922 CEP152O94986 1710 aa24.87■■□□□ 1.57
CCDC28B-202ENST00000421922 AGLP35573 1532 aa24.87■■□□□ 1.57
CCDC28B-202ENST00000421922 NEUROD1Q13562 356 aa24.86■■□□□ 1.57
CCDC28B-202ENST00000421922 ZC3H13Q5T200 1668 aaKnown RBP24.84■■□□□ 1.57
CCDC28B-202ENST00000421922 SIN3AQ96ST3 1273 aa24.83■■□□□ 1.57
CCDC28B-202ENST00000421922 ANKRD30BQ9BXX2 1392 aa24.82■■□□□ 1.56
CCDC28B-202ENST00000421922 E9PCH4 1651 aa24.81■■□□□ 1.56
CCDC28B-202ENST00000421922 LMTK2Q8IWU2 1503 aa24.81■■□□□ 1.56
CCDC28B-202ENST00000421922 EFCAB6Q5THR3 1501 aa24.79■■□□□ 1.56
CCDC28B-202ENST00000421922 TONSLQ96HA7 1378 aa24.79■■□□□ 1.56
CCDC28B-202ENST00000421922 WASHC2CQ9Y4E1 1318 aa24.79■■□□□ 1.56
CCDC28B-202ENST00000421922 ABCC3O15438 1527 aa24.78■■□□□ 1.56
CCDC28B-202ENST00000421922 ARID4BQ4LE39 1312 aaPredicted RBP24.77■■□□□ 1.56
CCDC28B-202ENST00000421922 CAMSAP1Q5T5Y3 1602 aa24.77■■□□□ 1.56
CCDC28B-202ENST00000421922 SIGLEC1Q9BZZ2 1709 aa24.76■■□□□ 1.55
CCDC28B-202ENST00000421922 SPHKAPQ2M3C7 1700 aa24.75■■□□□ 1.55
CCDC28B-202ENST00000421922 TIMELESSQ9UNS1 1208 aa24.75■■□□□ 1.55
CCDC28B-202ENST00000421922 RPRD2Q5VT52 1461 aaKnown RBP24.73■■□□□ 1.55
CCDC28B-202ENST00000421922 CCDC144AA2RUR9 1427 aa24.72■■□□□ 1.55
CCDC28B-202ENST00000421922 PPP6R1Q9UPN7 881 aa24.71■■□□□ 1.55
CCDC28B-202ENST00000421922 MLECQ14165 292 aa24.7■■□□□ 1.55
CCDC28B-202ENST00000421922 ESF1Q9H501 851 aaKnown RBP24.7■■□□□ 1.55
CCDC28B-202ENST00000421922 CLTCQ00610 1675 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-202ENST00000421922 TRPM2O94759 1503 aa24.68■■□□□ 1.54
CCDC28B-202ENST00000421922 CFAP65Q6ZU64 1925 aaKnown RBP24.65■■□□□ 1.54
CCDC28B-202ENST00000421922 NPATQ14207 1427 aa24.63■■□□□ 1.53
CCDC28B-202ENST00000421922 PLA2R1Q13018 1463 aa24.63■■□□□ 1.53
CCDC28B-202ENST00000421922 PTPRTO14522 1441 aa24.63■■□□□ 1.53
CCDC28B-202ENST00000421922 ARHGAP31Q2M1Z3 1444 aa24.63■■□□□ 1.53
CCDC28B-202ENST00000421922 CLTCL1P53675 1640 aa24.59■■□□□ 1.53
CCDC28B-202ENST00000421922 CNTLNQ9NXG0 1405 aa24.59■■□□□ 1.53
CCDC28B-202ENST00000421922 PREX1Q8TCU6 1659 aa24.57■■□□□ 1.52
CCDC28B-202ENST00000421922 KIF1BO60333 1816 aa24.57■■□□□ 1.52
CCDC28B-202ENST00000421922 FER1L4A9Z1Z3 1794 aa24.57■■□□□ 1.52
CCDC28B-202ENST00000421922 FBXO41Q8TF61 875 aa24.56■■□□□ 1.52
CCDC28B-202ENST00000421922 MROH2AA6NES4 1674 aa24.55■■□□□ 1.52
CCDC28B-202ENST00000421922 L3MBTL2Q969R5 705 aa24.53■■□□□ 1.52
CCDC28B-202ENST00000421922 PPP1R15AO75807 674 aaPredicted RBP24.52■■□□□ 1.52
CCDC28B-202ENST00000421922 NOS1P29475 1434 aa24.51■■□□□ 1.51
CCDC28B-202ENST00000421922 ADAMTSL3P82987 1691 aa24.51■■□□□ 1.51
CCDC28B-202ENST00000421922 UGGT1Q9NYU2 1555 aa24.5■■□□□ 1.51
CCDC28B-202ENST00000421922 SYNMO15061 1565 aa24.5■■□□□ 1.51
CCDC28B-202ENST00000421922 PTPRMP28827 1452 aa24.49■■□□□ 1.51
CCDC28B-202ENST00000421922 ERVK-7P63135 1459 aa24.49■■□□□ 1.51
CCDC28B-202ENST00000421922 RGL3Q3MIN7 710 aa24.47■■□□□ 1.51
CCDC28B-202ENST00000421922 ZMYM3Q14202 1370 aa24.47■■□□□ 1.51
CCDC28B-202ENST00000421922 NEURL4Q96JN8 1562 aa24.46■■□□□ 1.51
CCDC28B-202ENST00000421922 PIK3C2BO00750 1634 aa24.46■■□□□ 1.51
CCDC28B-202ENST00000421922 SPATA31D1Q6ZQQ2 1576 aa24.45■■□□□ 1.51
CCDC28B-202ENST00000421922 CHGAP10645 457 aaKnown RBP24.44■■□□□ 1.5
CCDC28B-202ENST00000421922 SPATA31E1Q6ZUB1 1445 aa24.44■■□□□ 1.5
CCDC28B-202ENST00000421922 DCAF11Q8TEB1 546 aa24.43■■□□□ 1.5
CCDC28B-202ENST00000421922 SLC52A1Q9NWF4 448 aa24.43■■□□□ 1.5
CCDC28B-202ENST00000421922 MADDQ8WXG6 1647 aa24.42■■□□□ 1.5
CCDC28B-202ENST00000421922 RIMS1Q86UR5 1692 aaKnown RBP24.41■■□□□ 1.5
CCDC28B-202ENST00000421922 ADGRB3O60242 1522 aa24.41■■□□□ 1.5
CCDC28B-202ENST00000421922 ZNF326Q5BKZ1 582 aaKnown RBP24.41■■□□□ 1.5
CCDC28B-202ENST00000421922 FBXO31Q5XUX0 539 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-202ENST00000421922 C3P01024 1663 aa24.4■■□□□ 1.5
CCDC28B-202ENST00000421922 KDM2AQ9Y2K7 1162 aa24.4■■□□□ 1.5
CCDC28B-202ENST00000421922 STAG3Q9UJ98 1225 aa24.35■■□□□ 1.49
CCDC28B-202ENST00000421922 TNRQ92752 1358 aa24.35■■□□□ 1.49
CCDC28B-202ENST00000421922 STAC3Q96MF2 364 aa24.35■■□□□ 1.49
CCDC28B-202ENST00000421922 UHRF1BP1Q6BDS2 1440 aa24.34■■□□□ 1.49
CCDC28B-202ENST00000421922 LMTK3Q96Q04 1460 aa24.34■■□□□ 1.49
CCDC28B-202ENST00000421922 IFT172Q9UG01 1749 aa24.34■■□□□ 1.49
CCDC28B-202ENST00000421922 IDI1Q13907 227 aa24.33■■□□□ 1.49
CCDC28B-202ENST00000421922 PLPPR3Q6T4P5 718 aa24.33■■□□□ 1.49
CCDC28B-202ENST00000421922 MYO5BQ9ULV0 1848 aa24.32■■□□□ 1.48
CCDC28B-202ENST00000421922 TMEM131LA2VDJ0 1609 aa24.31■■□□□ 1.48
CCDC28B-202ENST00000421922 PPLO60437 1756 aa24.31■■□□□ 1.48
CCDC28B-202ENST00000421922 PRAG1Q86YV5 1406 aa24.3■■□□□ 1.48
CCDC28B-202ENST00000421922 NBPF8Q3BBV2 869 aa24.3■■□□□ 1.48
CCDC28B-202ENST00000421922 RPGRIP1LQ68CZ1 1315 aa24.3■■□□□ 1.48
CCDC28B-202ENST00000421922 MYOM2P54296 1465 aa24.29■■□□□ 1.48
CCDC28B-202ENST00000421922 RALGAPBQ86X10 1494 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms