RNA–Protein interactions for RNA: ENST00000421517.5

FAM3A-209, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 3

Gene FAM3A, Length 853 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-209ENST00000421517 RNF17Q9BXT8 1623 aaKnown RBP22.82■■□□□ 1.24
FAM3A-209ENST00000421517 ANKRD30AQ9BXX3 1397 aa22.81■■□□□ 1.24
FAM3A-209ENST00000421517 KDM5DQ9BY66 1539 aa22.81■■□□□ 1.24
FAM3A-209ENST00000421517 KIF15Q9NS87 1388 aa22.8■■□□□ 1.24
FAM3A-209ENST00000421517 NCOA1Q15788 1441 aa22.8■■□□□ 1.24
FAM3A-209ENST00000421517 UHRF1BP1Q6BDS2 1440 aa22.8■■□□□ 1.24
FAM3A-209ENST00000421517 CLTCQ00610 1675 aaKnown RBP22.78■■□□□ 1.24
FAM3A-209ENST00000421517 PTPRKQ15262 1439 aa22.76■■□□□ 1.23
FAM3A-209ENST00000421517 WASHC2CQ9Y4E1 1318 aa22.75■■□□□ 1.23
FAM3A-209ENST00000421517 ZC3H13Q5T200 1668 aaKnown RBP22.74■■□□□ 1.23
FAM3A-209ENST00000421517 FAM50AQ14320 339 aaKnown RBP22.74■■□□□ 1.23
FAM3A-209ENST00000421517 PZPP20742 1482 aa22.73■■□□□ 1.23
FAM3A-209ENST00000421517 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
FAM3A-209ENST00000421517 RRP7BPQ9NSQ0 103 aa22.72■■□□□ 1.23
FAM3A-209ENST00000421517 ROCK1Q13464 1354 aa22.72■■□□□ 1.23
FAM3A-209ENST00000421517 PRDM15P57071 1507 aaPredicted RBP22.71■■□□□ 1.23
FAM3A-209ENST00000421517 RRBP1Q9P2E9 1410 aaKnown RBP22.7■■□□□ 1.22
FAM3A-209ENST00000421517 MROH1Q8NDA8 1641 aa22.7■■□□□ 1.22
FAM3A-209ENST00000421517 DEPDC5O75140 1603 aa22.69■■□□□ 1.22
FAM3A-209ENST00000421517 ABCC3O15438 1527 aa22.68■■□□□ 1.22
FAM3A-209ENST00000421517 ARHGAP31Q2M1Z3 1444 aa22.66■■□□□ 1.22
FAM3A-209ENST00000421517 CHIC2Q9UKJ5 165 aa22.66■■□□□ 1.22
FAM3A-209ENST00000421517 LMTK2Q8IWU2 1503 aa22.64■■□□□ 1.21
FAM3A-209ENST00000421517 HSPA2P54652 639 aa22.64■■□□□ 1.21
FAM3A-209ENST00000421517 DMRT2Q9Y5R5 561 aa22.64■■□□□ 1.21
FAM3A-209ENST00000421517 ZNF142P52746 1687 aaPredicted RBP22.64■■□□□ 1.21
FAM3A-209ENST00000421517 ANKRD50Q9ULJ7 1429 aa22.64■■□□□ 1.21
FAM3A-209ENST00000421517 KANK1Q14678 1352 aa22.63■■□□□ 1.21
FAM3A-209ENST00000421517 VWDEQ8N2E2 1590 aa22.62■■□□□ 1.21
FAM3A-209ENST00000421517 MYO3AQ8NEV4 1616 aa22.61■■□□□ 1.21
FAM3A-209ENST00000421517 TNRQ92752 1358 aa22.61■■□□□ 1.21
FAM3A-209ENST00000421517 PLA2R1Q13018 1463 aa22.6■■□□□ 1.21
FAM3A-209ENST00000421517 NLRP1Q9C000 1473 aa22.6■■□□□ 1.21
FAM3A-209ENST00000421517 SPATA31D1Q6ZQQ2 1576 aa22.6■■□□□ 1.21
FAM3A-209ENST00000421517 A2ML1A8K2U0 1454 aa22.6■■□□□ 1.21
FAM3A-209ENST00000421517 CEP170BQ9Y4F5 1589 aaPredicted RBP22.59■■□□□ 1.21
FAM3A-209ENST00000421517 CAMSAP1Q5T5Y3 1602 aa22.57■■□□□ 1.2
FAM3A-209ENST00000421517 PTPRTO14522 1441 aa22.57■■□□□ 1.2
FAM3A-209ENST00000421517 FBXO31Q5XUX0 539 aaPredicted RBP22.56■■□□□ 1.2
FAM3A-209ENST00000421517 PPARGC1BQ86YN6 1023 aaKnown RBP22.56■■□□□ 1.2
FAM3A-209ENST00000421517 ERVK-7P63135 1459 aa22.54■■□□□ 1.2
FAM3A-209ENST00000421517 STRCQ7RTU9 1775 aa22.54■■□□□ 1.2
FAM3A-209ENST00000421517 PKD2Q13563 968 aa22.53■■□□□ 1.2
FAM3A-209ENST00000421517 CEP152O94986 1710 aa22.52■■□□□ 1.2
FAM3A-209ENST00000421517 RPRD2Q5VT52 1461 aaKnown RBP22.51■■□□□ 1.19
FAM3A-209ENST00000421517 UNC13BO14795 1591 aa22.5■■□□□ 1.19
FAM3A-209ENST00000421517 THEMISQ8N1K5 641 aaPredicted RBP22.49■■□□□ 1.19
FAM3A-209ENST00000421517 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.49■■□□□ 1.19
FAM3A-209ENST00000421517 EFCAB6Q5THR3 1501 aa22.47■■□□□ 1.19
FAM3A-209ENST00000421517 UGGT1Q9NYU2 1555 aa22.46■■□□□ 1.19
FAM3A-209ENST00000421517 NOS1P29475 1434 aa22.44■■□□□ 1.18
FAM3A-209ENST00000421517 TET3O43151 1660 aa22.42■■□□□ 1.18
FAM3A-209ENST00000421517 ITGAEP38570 1179 aa22.42■■□□□ 1.18
FAM3A-209ENST00000421517 KDM5AP29375 1690 aaKnown RBP22.42■■□□□ 1.18
FAM3A-209ENST00000421517 SLC52A1Q9NWF4 448 aa22.41■■□□□ 1.18
FAM3A-209ENST00000421517 IQGAP3Q86VI3 1631 aa22.41■■□□□ 1.18
FAM3A-209ENST00000421517 HFM1A2PYH4 1435 aa22.4■■□□□ 1.18
FAM3A-209ENST00000421517 NAIPQ13075 1403 aa22.4■■□□□ 1.18
FAM3A-209ENST00000421517 MED14O60244 1454 aa22.39■■□□□ 1.17
FAM3A-209ENST00000421517 ANKLE2Q86XL3 938 aa22.38■■□□□ 1.17
FAM3A-209ENST00000421517 GCC2Q8IWJ2 1684 aa22.38■■□□□ 1.17
FAM3A-209ENST00000421517 NUP155O75694 1391 aa22.37■■□□□ 1.17
FAM3A-209ENST00000421517 NCKAP5LQ9HCH0 1330 aa22.36■■□□□ 1.17
FAM3A-209ENST00000421517 ACIN1Q9UKV3 1341 aaKnown RBP22.36■■□□□ 1.17
FAM3A-209ENST00000421517 SLIT1O75093 1534 aa22.35■■□□□ 1.17
FAM3A-209ENST00000421517 ARHGAP23Q9P227 1491 aa22.34■■□□□ 1.17
FAM3A-209ENST00000421517 UBR1Q8IWV7 1749 aa22.34■■□□□ 1.17
FAM3A-209ENST00000421517 POLR1AO95602 1720 aaPredicted RBP22.33■■□□□ 1.17
FAM3A-209ENST00000421517 SYNMO15061 1565 aa22.33■■□□□ 1.16
FAM3A-209ENST00000421517 IDI1Q13907 227 aa22.32■■□□□ 1.16
FAM3A-209ENST00000421517 NEURL4Q96JN8 1562 aa22.32■■□□□ 1.16
FAM3A-209ENST00000421517 IQSEC2Q5JU85 1478 aa22.3■■□□□ 1.16
FAM3A-209ENST00000421517 CERKQ8TCT0 537 aa22.3■■□□□ 1.16
FAM3A-209ENST00000421517 PIK3C2BO00750 1634 aa22.29■■□□□ 1.16
FAM3A-209ENST00000421517 LTBP4Q8N2S1 1624 aa22.28■■□□□ 1.16
FAM3A-209ENST00000421517 E9PCH4 1651 aa22.28■■□□□ 1.16
FAM3A-209ENST00000421517 FBXO41Q8TF61 875 aa22.28■■□□□ 1.16
FAM3A-209ENST00000421517 CFAP65Q6ZU64 1925 aaKnown RBP22.27■■□□□ 1.16
FAM3A-209ENST00000421517 TMEM2Q9UHN6 1383 aa22.27■■□□□ 1.16
FAM3A-209ENST00000421517 ADGRB3O60242 1522 aa22.26■■□□□ 1.15
FAM3A-209ENST00000421517 NPHP4O75161 1426 aaPredicted RBP22.26■■□□□ 1.15
FAM3A-209ENST00000421517 SCAF11Q99590 1463 aaKnown RBP22.26■■□□□ 1.15
FAM3A-209ENST00000421517 STAG3Q9UJ98 1225 aa22.24■■□□□ 1.15
FAM3A-209ENST00000421517 EID1Q9Y6B2 187 aa22.24■■□□□ 1.15
FAM3A-209ENST00000421517 IQGAP1P46940 1657 aa22.21■■□□□ 1.15
FAM3A-209ENST00000421517 HDGFP51858 240 aaKnown RBP22.21■■□□□ 1.15
FAM3A-209ENST00000421517 TXNDC2Q86VQ3 553 aa22.21■■□□□ 1.15
FAM3A-209ENST00000421517 ILDR1Q86SU0 546 aaPredicted RBP22.2■■□□□ 1.14
FAM3A-209ENST00000421517 LTKP29376 864 aa22.19■■□□□ 1.14
FAM3A-209ENST00000421517 TMEM131LA2VDJ0 1609 aa22.18■■□□□ 1.14
FAM3A-209ENST00000421517 CPS1P31327 1500 aa22.18■■□□□ 1.14
FAM3A-209ENST00000421517 ZNF335Q9H4Z2 1342 aaPredicted RBP22.17■■□□□ 1.14
FAM3A-209ENST00000421517 ZFYVE9O95405 1425 aa22.15■■□□□ 1.14
FAM3A-209ENST00000421517 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.14■■□□□ 1.13
FAM3A-209ENST00000421517 SPHKAPQ2M3C7 1700 aa22.14■■□□□ 1.13
FAM3A-209ENST00000421517 TRPM2O94759 1503 aa22.13■■□□□ 1.13
FAM3A-209ENST00000421517 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
FAM3A-209ENST00000421517 TRIM52Q96A61 297 aa22.12■■□□□ 1.13
FAM3A-209ENST00000421517 HRCP23327 699 aa22.11■■□□□ 1.13
FAM3A-209ENST00000421517 SLC4A1APQ9BWU0 796 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms