RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 KIF3BO15066 747 aa17.4■□□□□ 0.38
SSBP3-206ENST00000420121 MROH1Q8NDA8 1641 aa17.39■□□□□ 0.38
SSBP3-206ENST00000420121 NCOA1Q15788 1441 aa17.39■□□□□ 0.38
SSBP3-206ENST00000420121 TSPY4P0CV99 314 aa17.39■□□□□ 0.37
SSBP3-206ENST00000420121 TSPY10P0CW01 314 aa17.39■□□□□ 0.37
SSBP3-206ENST00000420121 CEP170BQ9Y4F5 1589 aaPredicted RBP17.39■□□□□ 0.37
SSBP3-206ENST00000420121 CAMSAP1Q5T5Y3 1602 aa17.39■□□□□ 0.37
SSBP3-206ENST00000420121 DNMT1P26358 1616 aaKnown RBP17.38■□□□□ 0.37
SSBP3-206ENST00000420121 TCOF1Q13428 1488 aaKnown RBP17.37■□□□□ 0.37
SSBP3-206ENST00000420121 FBXO41Q8TF61 875 aa17.37■□□□□ 0.37
SSBP3-206ENST00000420121 ABCC5O15440 1437 aa17.37■□□□□ 0.37
SSBP3-206ENST00000420121 FGD6Q6ZV73 1430 aa17.37■□□□□ 0.37
SSBP3-206ENST00000420121 SHANK2Q9UPX8 1470 aa17.37■□□□□ 0.37
SSBP3-206ENST00000420121 PTPRTO14522 1441 aa17.36■□□□□ 0.37
SSBP3-206ENST00000420121 PZPP20742 1482 aa17.36■□□□□ 0.37
SSBP3-206ENST00000420121 ZC3H13Q5T200 1668 aaKnown RBP17.35■□□□□ 0.37
SSBP3-206ENST00000420121 APLP2Q06481 763 aa17.34■□□□□ 0.37
SSBP3-206ENST00000420121 DUOX2Q9NRD8 1548 aa17.34■□□□□ 0.37
SSBP3-206ENST00000420121 CEP152O94986 1710 aa17.33■□□□□ 0.37
SSBP3-206ENST00000420121 ABCC3O15438 1527 aa17.33■□□□□ 0.37
SSBP3-206ENST00000420121 PLA2R1Q13018 1463 aa17.32■□□□□ 0.36
SSBP3-206ENST00000420121 DAPK1P53355 1430 aa17.32■□□□□ 0.36
SSBP3-206ENST00000420121 DMRT2Q9Y5R5 561 aa17.32■□□□□ 0.36
SSBP3-206ENST00000420121 A2ML1A8K2U0 1454 aa17.31■□□□□ 0.36
SSBP3-206ENST00000420121 FBXO31Q5XUX0 539 aaPredicted RBP17.31■□□□□ 0.36
SSBP3-206ENST00000420121 CERKQ8TCT0 537 aa17.31■□□□□ 0.36
SSBP3-206ENST00000420121 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
SSBP3-206ENST00000420121 DEPDC5O75140 1603 aa17.29■□□□□ 0.36
SSBP3-206ENST00000420121 WASHC2CQ9Y4E1 1318 aa17.29■□□□□ 0.36
SSBP3-206ENST00000420121 PRDM15P57071 1507 aaPredicted RBP17.29■□□□□ 0.36
SSBP3-206ENST00000420121 TNRQ92752 1358 aa17.28■□□□□ 0.36
SSBP3-206ENST00000420121 KIF15Q9NS87 1388 aa17.28■□□□□ 0.36
SSBP3-206ENST00000420121 MSH5O43196 834 aa17.28■□□□□ 0.36
SSBP3-206ENST00000420121 SPATA31D1Q6ZQQ2 1576 aa17.28■□□□□ 0.36
SSBP3-206ENST00000420121 ERBINQ96RT1 1412 aa17.27■□□□□ 0.35
SSBP3-206ENST00000420121 CFAP65Q6ZU64 1925 aaKnown RBP17.27■□□□□ 0.35
SSBP3-206ENST00000420121 POLR1AO95602 1720 aaPredicted RBP17.27■□□□□ 0.35
SSBP3-206ENST00000420121 NCKAP5LQ9HCH0 1330 aa17.26■□□□□ 0.35
SSBP3-206ENST00000420121 NEURL4Q96JN8 1562 aa17.25■□□□□ 0.35
SSBP3-206ENST00000420121 ADGRL2O95490 1459 aa17.24■□□□□ 0.35
SSBP3-206ENST00000420121 ERVK-7P63135 1459 aa17.24■□□□□ 0.35
SSBP3-206ENST00000420121 RRP7BPQ9NSQ0 103 aa17.23■□□□□ 0.35
SSBP3-206ENST00000420121 NLRP1Q9C000 1473 aa17.23■□□□□ 0.35
SSBP3-206ENST00000420121 PIAS4Q8N2W9 510 aaPredicted RBP17.22■□□□□ 0.35
SSBP3-206ENST00000420121 VWDEQ8N2E2 1590 aa17.22■□□□□ 0.35
SSBP3-206ENST00000420121 PKD2Q13563 968 aa17.21■□□□□ 0.35
SSBP3-206ENST00000420121 UGGT1Q9NYU2 1555 aa17.2■□□□□ 0.34
SSBP3-206ENST00000420121 ANKRD30AQ9BXX3 1397 aa17.19■□□□□ 0.34
SSBP3-206ENST00000420121 CHIC2Q9UKJ5 165 aa17.19■□□□□ 0.34
SSBP3-206ENST00000420121 ARHGAP31Q2M1Z3 1444 aa17.19■□□□□ 0.34
SSBP3-206ENST00000420121 UBR1Q8IWV7 1749 aa17.18■□□□□ 0.34
SSBP3-206ENST00000420121 ADRA2BP18089 450 aa17.18■□□□□ 0.34
SSBP3-206ENST00000420121 LMTK2Q8IWU2 1503 aa17.17■□□□□ 0.34
SSBP3-206ENST00000420121 IQSEC2Q5JU85 1478 aa17.17■□□□□ 0.34
SSBP3-206ENST00000420121 ZNF335Q9H4Z2 1342 aaPredicted RBP17.17■□□□□ 0.34
SSBP3-206ENST00000420121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.16■□□□□ 0.34
SSBP3-206ENST00000420121 MED14O60244 1454 aa17.14■□□□□ 0.33
SSBP3-206ENST00000420121 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
SSBP3-206ENST00000420121 PIK3C2BO00750 1634 aa17.12■□□□□ 0.33
SSBP3-206ENST00000420121 THEMISQ8N1K5 641 aaPredicted RBP17.12■□□□□ 0.33
SSBP3-206ENST00000420121 IQGAP1P46940 1657 aa17.12■□□□□ 0.33
SSBP3-206ENST00000420121 EFCAB6Q5THR3 1501 aa17.11■□□□□ 0.33
SSBP3-206ENST00000420121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.11■□□□□ 0.33
SSBP3-206ENST00000420121 SYNMO15061 1565 aa17.11■□□□□ 0.33
SSBP3-206ENST00000420121 ANKRD50Q9ULJ7 1429 aa17.1■□□□□ 0.33
SSBP3-206ENST00000420121 KANK1Q14678 1352 aa17.09■□□□□ 0.33
SSBP3-206ENST00000420121 ARHGAP23Q9P227 1491 aa17.09■□□□□ 0.33
SSBP3-206ENST00000420121 UNC13BO14795 1591 aa17.09■□□□□ 0.33
SSBP3-206ENST00000420121 KDM5AP29375 1690 aaKnown RBP17.09■□□□□ 0.33
SSBP3-206ENST00000420121 STRCP1A6NGW2 1772 aa17.09■□□□□ 0.33
SSBP3-206ENST00000420121 SLIT1O75093 1534 aa17.08■□□□□ 0.32
SSBP3-206ENST00000420121 NPHP4O75161 1426 aaPredicted RBP17.08■□□□□ 0.32
SSBP3-206ENST00000420121 ANKLE2Q86XL3 938 aa17.08■□□□□ 0.32
SSBP3-206ENST00000420121 NOS1P29475 1434 aa17.07■□□□□ 0.32
SSBP3-206ENST00000420121 TET3O43151 1660 aa17.07■□□□□ 0.32
SSBP3-206ENST00000420121 GCC2Q8IWJ2 1684 aa17.06■□□□□ 0.32
SSBP3-206ENST00000420121 ROCK1Q13464 1354 aa17.05■□□□□ 0.32
SSBP3-206ENST00000420121 PPARGC1BQ86YN6 1023 aaKnown RBP17.05■□□□□ 0.32
SSBP3-206ENST00000420121 CPS1P31327 1500 aa17.04■□□□□ 0.32
SSBP3-206ENST00000420121 SCAF11Q99590 1463 aaKnown RBP17.03■□□□□ 0.32
SSBP3-206ENST00000420121 MYO5BQ9ULV0 1848 aa17.03■□□□□ 0.32
SSBP3-206ENST00000420121 E9PCH4 1651 aa17.02■□□□□ 0.32
SSBP3-206ENST00000420121 RPRD2Q5VT52 1461 aaKnown RBP17.02■□□□□ 0.32
SSBP3-206ENST00000420121 IQGAP3Q86VI3 1631 aa17.02■□□□□ 0.31
SSBP3-206ENST00000420121 LTKP29376 864 aa17.01■□□□□ 0.31
SSBP3-206ENST00000420121 IDI1Q13907 227 aa17■□□□□ 0.31
SSBP3-206ENST00000420121 ADGRB3O60242 1522 aa17■□□□□ 0.31
SSBP3-206ENST00000420121 TMEM2Q9UHN6 1383 aa16.99■□□□□ 0.31
SSBP3-206ENST00000420121 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
SSBP3-206ENST00000420121 RRBP1Q9P2E9 1410 aaKnown RBP16.98■□□□□ 0.31
SSBP3-206ENST00000420121 XIRP1Q702N8 1843 aaKnown RBP16.97■□□□□ 0.31
SSBP3-206ENST00000420121 TMEM131LA2VDJ0 1609 aa16.96■□□□□ 0.3
SSBP3-206ENST00000420121 UBAP1LF5GYI3 381 aa16.95■□□□□ 0.3
SSBP3-206ENST00000420121 TXNDC2Q86VQ3 553 aa16.95■□□□□ 0.3
SSBP3-206ENST00000420121 LRRC7Q96NW7 1537 aa16.95■□□□□ 0.3
SSBP3-206ENST00000420121 ITGAEP38570 1179 aa16.94■□□□□ 0.3
SSBP3-206ENST00000420121 SLC52A1Q9NWF4 448 aa16.92■□□□□ 0.3
SSBP3-206ENST00000420121 ZFYVE9O95405 1425 aa16.91■□□□□ 0.3
SSBP3-206ENST00000420121 STAG3Q9UJ98 1225 aa16.89■□□□□ 0.29
SSBP3-206ENST00000420121 EID1Q9Y6B2 187 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms