RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 KDM5DQ9BY66 1539 aa24.24■■□□□ 1.47
ITGB1-204ENST00000417122 EIF2AK4Q9P2K8 1649 aaKnown RBP24.24■■□□□ 1.47
ITGB1-204ENST00000417122 DUOX2Q9NRD8 1548 aa24.22■■□□□ 1.47
ITGB1-204ENST00000417122 WASHC2CQ9Y4E1 1318 aa24.22■■□□□ 1.47
ITGB1-204ENST00000417122 RNF17Q9BXT8 1623 aaKnown RBP24.21■■□□□ 1.47
ITGB1-204ENST00000417122 STRCQ7RTU9 1775 aa24.19■■□□□ 1.46
ITGB1-204ENST00000417122 KIF15Q9NS87 1388 aa24.18■■□□□ 1.46
ITGB1-204ENST00000417122 RRP7BPQ9NSQ0 103 aa24.18■■□□□ 1.46
ITGB1-204ENST00000417122 MYO3AQ8NEV4 1616 aa24.17■■□□□ 1.46
ITGB1-204ENST00000417122 FAM50AQ14320 339 aaKnown RBP24.17■■□□□ 1.46
ITGB1-204ENST00000417122 PZPP20742 1482 aa24.15■■□□□ 1.46
ITGB1-204ENST00000417122 CHIC2Q9UKJ5 165 aa24.15■■□□□ 1.46
ITGB1-204ENST00000417122 ZNF142P52746 1687 aaPredicted RBP24.15■■□□□ 1.46
ITGB1-204ENST00000417122 ZC3H13Q5T200 1668 aaKnown RBP24.15■■□□□ 1.46
ITGB1-204ENST00000417122 ERBINQ96RT1 1412 aa24.14■■□□□ 1.45
ITGB1-204ENST00000417122 MROH1Q8NDA8 1641 aa24.13■■□□□ 1.45
ITGB1-204ENST00000417122 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
ITGB1-204ENST00000417122 CEP170BQ9Y4F5 1589 aaPredicted RBP24.12■■□□□ 1.45
ITGB1-204ENST00000417122 FBXO31Q5XUX0 539 aaPredicted RBP24.12■■□□□ 1.45
ITGB1-204ENST00000417122 DMRT2Q9Y5R5 561 aa24.12■■□□□ 1.45
ITGB1-204ENST00000417122 ABCC3O15438 1527 aa24.11■■□□□ 1.45
ITGB1-204ENST00000417122 CAMSAP1Q5T5Y3 1602 aa24.11■■□□□ 1.45
ITGB1-204ENST00000417122 ILDR1Q86SU0 546 aaPredicted RBP24.11■■□□□ 1.45
ITGB1-204ENST00000417122 NCOA1Q15788 1441 aa24.1■■□□□ 1.45
ITGB1-204ENST00000417122 PPARGC1BQ86YN6 1023 aaKnown RBP24.09■■□□□ 1.45
ITGB1-204ENST00000417122 CEP152O94986 1710 aa24.09■■□□□ 1.45
ITGB1-204ENST00000417122 TNRQ92752 1358 aa24.08■■□□□ 1.45
ITGB1-204ENST00000417122 ADGRL2O95490 1459 aa24.07■■□□□ 1.44
ITGB1-204ENST00000417122 PRDM15P57071 1507 aaPredicted RBP24.07■■□□□ 1.44
ITGB1-204ENST00000417122 A2ML1A8K2U0 1454 aa24.07■■□□□ 1.44
ITGB1-204ENST00000417122 PTPRTO14522 1441 aa24.05■■□□□ 1.44
ITGB1-204ENST00000417122 DEPDC5O75140 1603 aa24.05■■□□□ 1.44
ITGB1-204ENST00000417122 PLA2R1Q13018 1463 aa24.02■■□□□ 1.44
ITGB1-204ENST00000417122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.02■■□□□ 1.441e-12■□□□□ 10
ITGB1-204ENST00000417122 SPATA31D1Q6ZQQ2 1576 aa24■■□□□ 1.43
ITGB1-204ENST00000417122 NCKAP5LQ9HCH0 1330 aa24■■□□□ 1.43
ITGB1-204ENST00000417122 CFAP65Q6ZU64 1925 aaKnown RBP23.99■■□□□ 1.43
ITGB1-204ENST00000417122 KANK1Q14678 1352 aa23.99■■□□□ 1.43
ITGB1-204ENST00000417122 NLRP1Q9C000 1473 aa23.99■■□□□ 1.43
ITGB1-204ENST00000417122 PKD2Q13563 968 aa23.98■■□□□ 1.43
ITGB1-204ENST00000417122 ERVK-7P63135 1459 aa23.98■■□□□ 1.43
ITGB1-204ENST00000417122 FBXO41Q8TF61 875 aa23.97■■□□□ 1.43
ITGB1-204ENST00000417122 ARHGAP31Q2M1Z3 1444 aa23.96■■□□□ 1.43
ITGB1-204ENST00000417122 ANKRD50Q9ULJ7 1429 aa23.95■■□□□ 1.42
ITGB1-204ENST00000417122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.95■■□□□ 1.42
ITGB1-204ENST00000417122 CERKQ8TCT0 537 aa23.95■■□□□ 1.42
ITGB1-204ENST00000417122 VWDEQ8N2E2 1590 aa23.94■■□□□ 1.42
ITGB1-204ENST00000417122 UGGT1Q9NYU2 1555 aa23.94■■□□□ 1.42
ITGB1-204ENST00000417122 LMTK2Q8IWU2 1503 aa23.93■■□□□ 1.42
ITGB1-204ENST00000417122 ROCK1Q13464 1354 aa23.92■■□□□ 1.42
ITGB1-204ENST00000417122 ITGAEP38570 1179 aa23.91■■□□□ 1.42
ITGB1-204ENST00000417122 THEMISQ8N1K5 641 aaPredicted RBP23.91■■□□□ 1.42
ITGB1-204ENST00000417122 POLR1AO95602 1720 aaPredicted RBP23.9■■□□□ 1.42
ITGB1-204ENST00000417122 RRBP1Q9P2E9 1410 aaKnown RBP23.86■■□□□ 1.41
ITGB1-204ENST00000417122 LTBP4Q8N2S1 1624 aa23.85■■□□□ 1.41
ITGB1-204ENST00000417122 ANKLE2Q86XL3 938 aa23.85■■□□□ 1.41
ITGB1-204ENST00000417122 EFCAB6Q5THR3 1501 aa23.84■■□□□ 1.41
ITGB1-204ENST00000417122 NEURL4Q96JN8 1562 aa23.84■■□□□ 1.41
ITGB1-204ENST00000417122 UBR1Q8IWV7 1749 aa23.84■■□□□ 1.41
ITGB1-204ENST00000417122 UNC13BO14795 1591 aa23.83■■□□□ 1.41
ITGB1-204ENST00000417122 ZNF335Q9H4Z2 1342 aaPredicted RBP23.8■■□□□ 1.4
ITGB1-204ENST00000417122 TET3O43151 1660 aa23.79■■□□□ 1.4
ITGB1-204ENST00000417122 PIK3C2BO00750 1634 aa23.79■■□□□ 1.4
ITGB1-204ENST00000417122 NOS1P29475 1434 aa23.77■■□□□ 1.4
ITGB1-204ENST00000417122 GCC2Q8IWJ2 1684 aa23.77■■□□□ 1.4
ITGB1-204ENST00000417122 MED14O60244 1454 aa23.77■■□□□ 1.4
ITGB1-204ENST00000417122 RPRD2Q5VT52 1461 aaKnown RBP23.77■■□□□ 1.4
ITGB1-204ENST00000417122 SYNMO15061 1565 aa23.77■■□□□ 1.4
ITGB1-204ENST00000417122 NPHP4O75161 1426 aaPredicted RBP23.76■■□□□ 1.39
ITGB1-204ENST00000417122 IQGAP3Q86VI3 1631 aa23.74■■□□□ 1.39
ITGB1-204ENST00000417122 IQGAP1P46940 1657 aa23.74■■□□□ 1.39
ITGB1-204ENST00000417122 IDI1Q13907 227 aa23.74■■□□□ 1.39
ITGB1-204ENST00000417122 STAG3Q9UJ98 1225 aa23.74■■□□□ 1.39
ITGB1-204ENST00000417122 IQSEC2Q5JU85 1478 aa23.73■■□□□ 1.39
ITGB1-204ENST00000417122 SLIT1O75093 1534 aa23.73■■□□□ 1.39
ITGB1-204ENST00000417122 KDM5AP29375 1690 aaKnown RBP23.73■■□□□ 1.39
ITGB1-204ENST00000417122 ARHGAP23Q9P227 1491 aa23.72■■□□□ 1.39
ITGB1-204ENST00000417122 NUP155O75694 1391 aa23.71■■□□□ 1.39
ITGB1-204ENST00000417122 E9PCH4 1651 aa23.7■■□□□ 1.39
ITGB1-204ENST00000417122 SCAF11Q99590 1463 aaKnown RBP23.7■■□□□ 1.38
ITGB1-204ENST00000417122 SLC52A1Q9NWF4 448 aa23.7■■□□□ 1.38
ITGB1-204ENST00000417122 TXNDC2Q86VQ3 553 aa23.69■■□□□ 1.38
ITGB1-204ENST00000417122 LTKP29376 864 aa23.68■■□□□ 1.38
ITGB1-204ENST00000417122 TMEM2Q9UHN6 1383 aa23.67■■□□□ 1.38
ITGB1-204ENST00000417122 EID1Q9Y6B2 187 aa23.67■■□□□ 1.38
ITGB1-204ENST00000417122 ADGRB3O60242 1522 aa23.67■■□□□ 1.38
ITGB1-204ENST00000417122 NAIPQ13075 1403 aa23.66■■□□□ 1.38
ITGB1-204ENST00000417122 CPS1P31327 1500 aa23.64■■□□□ 1.38
ITGB1-204ENST00000417122 MYO5BQ9ULV0 1848 aa23.61■■□□□ 1.37
ITGB1-204ENST00000417122 HFM1A2PYH4 1435 aa23.59■■□□□ 1.37
ITGB1-204ENST00000417122 TMEM131LA2VDJ0 1609 aa23.58■■□□□ 1.36
ITGB1-204ENST00000417122 STRCP1A6NGW2 1772 aa23.57■■□□□ 1.36
ITGB1-204ENST00000417122 SPHKAPQ2M3C7 1700 aa23.54■■□□□ 1.36
ITGB1-204ENST00000417122 UBAP1LF5GYI3 381 aa23.54■■□□□ 1.36
ITGB1-204ENST00000417122 CHGAP10645 457 aaKnown RBP23.54■■□□□ 1.36
ITGB1-204ENST00000417122 ZFYVE9O95405 1425 aa23.52■■□□□ 1.36
ITGB1-204ENST00000417122 RIMS2Q9UQ26 1411 aa23.51■■□□□ 1.35
ITGB1-204ENST00000417122 HDGFP51858 240 aaKnown RBP23.51■■□□□ 1.35
ITGB1-204ENST00000417122 TRIM52Q96A61 297 aa23.51■■□□□ 1.35
ITGB1-204ENST00000417122 LRRC7Q96NW7 1537 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms