RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 SHANK2Q9UPX8 1470 aa28.14■■■□□ 2.1
AP1S3-205ENST00000415298 ROCK1Q13464 1354 aa28.14■■■□□ 2.09
AP1S3-205ENST00000415298 ANKRD30AQ9BXX3 1397 aa28.13■■■□□ 2.09
AP1S3-205ENST00000415298 POGZQ7Z3K3 1410 aa28.12■■■□□ 2.09
AP1S3-205ENST00000415298 DENND4BO75064 1496 aaPredicted RBP28.12■■■□□ 2.09
AP1S3-205ENST00000415298 COL17A1Q9UMD9 1497 aaPredicted RBP28.12■■■□□ 2.09
AP1S3-205ENST00000415298 ADGRL2O95490 1459 aa28.11■■■□□ 2.09
AP1S3-205ENST00000415298 KDM6BO15054 1643 aa28.1■■■□□ 2.09
AP1S3-205ENST00000415298 ZNF518AQ6AHZ1 1483 aa28.1■■■□□ 2.09
AP1S3-205ENST00000415298 ADGBQ8N7X0 1667 aa28.09■■■□□ 2.09
AP1S3-205ENST00000415298 KIF15Q9NS87 1388 aa28.07■■■□□ 2.08
AP1S3-205ENST00000415298 MAST1Q9Y2H9 1570 aa28.06■■■□□ 2.08
AP1S3-205ENST00000415298 RTL5Q5HYW3 569 aaPredicted RBP28.06■■■□□ 2.08
AP1S3-205ENST00000415298 RICTORQ6R327 1708 aa28.04■■■□□ 2.08
AP1S3-205ENST00000415298 ZFYVE16Q7Z3T8 1539 aa28.04■■■□□ 2.08
AP1S3-205ENST00000415298 NOP58Q9Y2X3 529 aaKnown RBP28.04■■■□□ 2.08
AP1S3-205ENST00000415298 PDE4CQ08493 712 aa28.03■■■□□ 2.08
AP1S3-205ENST00000415298 VSIG10Q8N0Z9 540 aa28.03■■■□□ 2.08
AP1S3-205ENST00000415298 GCC2Q8IWJ2 1684 aa28.03■■■□□ 2.08
AP1S3-205ENST00000415298 KDM5CP41229 1560 aa28.02■■■□□ 2.08
AP1S3-205ENST00000415298 ATP7AQ04656 1500 aa28.02■■■□□ 2.08
AP1S3-205ENST00000415298 FRMPD1Q5SYB0 1578 aa28.02■■■□□ 2.08
AP1S3-205ENST00000415298 RTEL1-TNFRSF6BF6WH68 1400 aa28.02■■■□□ 2.08
AP1S3-205ENST00000415298 C11orf95C9JLR9 678 aaPredicted RBP28.01■■■□□ 2.08
AP1S3-205ENST00000415298 KIDINS220Q9ULH0 1771 aa28.01■■■□□ 2.07
AP1S3-205ENST00000415298 RSPH6AQ9H0K4 717 aa28.01■■■□□ 2.07
AP1S3-205ENST00000415298 INO80Q9ULG1 1556 aaPredicted RBP28■■■□□ 2.07
AP1S3-205ENST00000415298 ANKRD50Q9ULJ7 1429 aa28■■■□□ 2.07
AP1S3-205ENST00000415298 FGD1P98174 961 aa27.96■■■□□ 2.07
AP1S3-205ENST00000415298 MLH3Q9UHC1 1453 aa27.96■■■□□ 2.07
AP1S3-205ENST00000415298 PLXNC1O60486 1568 aa27.96■■■□□ 2.07
AP1S3-205ENST00000415298 YEATS2Q9ULM3 1422 aa27.95■■■□□ 2.07
AP1S3-205ENST00000415298 TRIM52Q96A61 297 aa27.95■■■□□ 2.06
AP1S3-205ENST00000415298 HECW2Q9P2P5 1572 aa27.94■■■□□ 2.06
AP1S3-205ENST00000415298 TIMELESSQ9UNS1 1208 aa27.93■■■□□ 2.06
AP1S3-205ENST00000415298 PDIA4P13667 645 aaKnown RBP27.9■■■□□ 2.06
AP1S3-205ENST00000415298 DUOX2Q9NRD8 1548 aa27.89■■■□□ 2.06
AP1S3-205ENST00000415298 DHX57Q6P158 1386 aaKnown RBP27.89■■■□□ 2.06
AP1S3-205ENST00000415298 ABCA6Q8N139 1617 aa27.88■■■□□ 2.05
AP1S3-205ENST00000415298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.86■■■□□ 2.05
AP1S3-205ENST00000415298 DHX29Q7Z478 1369 aaKnown RBP27.85■■■□□ 2.05
AP1S3-205ENST00000415298 ZMYM4Q5VZL5 1548 aa27.85■■■□□ 2.05
AP1S3-205ENST00000415298 KIF3BO15066 747 aa27.84■■■□□ 2.05
AP1S3-205ENST00000415298 DIP2CQ9Y2E4 1556 aa27.83■■■□□ 2.05
AP1S3-205ENST00000415298 A0A0U1RQG5 324 aaPredicted RBP27.83■■■□□ 2.05
AP1S3-205ENST00000415298 A2MP01023 1474 aa27.83■■■□□ 2.05
AP1S3-205ENST00000415298 AAMPQ13685 434 aa27.83■■■□□ 2.05
AP1S3-205ENST00000415298 ERBINQ96RT1 1412 aa27.82■■■□□ 2.04
AP1S3-205ENST00000415298 PAK3O75914 559 aaPredicted RBP27.8■■■□□ 2.04
AP1S3-205ENST00000415298 NUP155O75694 1391 aa27.79■■■□□ 2.04
AP1S3-205ENST00000415298 MPHOSPH9Q99550 1183 aa27.78■■■□□ 2.04
AP1S3-205ENST00000415298 MAGI2Q86UL8 1455 aa27.78■■■□□ 2.04
AP1S3-205ENST00000415298 FOXD1Q16676 465 aa27.78■■■□□ 2.04
AP1S3-205ENST00000415298 RBM10P98175 930 aaKnown RBP27.77■■■□□ 2.04
AP1S3-205ENST00000415298 WASHC2AQ641Q2 1341 aa27.77■■■□□ 2.04
AP1S3-205ENST00000415298 SLC4A1APQ9BWU0 796 aaKnown RBP27.76■■■□□ 2.03
AP1S3-205ENST00000415298 WASHC2CQ9Y4E1 1318 aa27.74■■■□□ 2.03
AP1S3-205ENST00000415298 ATP10AO60312 1499 aa27.74■■■□□ 2.03
AP1S3-205ENST00000415298 GGT6Q6P531 493 aa27.74■■■□□ 2.03
AP1S3-205ENST00000415298 PZPP20742 1482 aa27.73■■■□□ 2.03
AP1S3-205ENST00000415298 SIGLEC1Q9BZZ2 1709 aa27.7■■■□□ 2.02
AP1S3-205ENST00000415298 UNC13BO14795 1591 aa27.67■■■□□ 2.02
AP1S3-205ENST00000415298 ARHGEF40Q8TER5 1519 aa27.66■■■□□ 2.02
AP1S3-205ENST00000415298 PKD2Q13563 968 aa27.66■■■□□ 2.02
AP1S3-205ENST00000415298 EIF2AK4Q9P2K8 1649 aaKnown RBP27.65■■■□□ 2.02
AP1S3-205ENST00000415298 MLECQ14165 292 aa27.64■■■□□ 2.02
AP1S3-205ENST00000415298 FAM135AQ9P2D6 1515 aa27.64■■■□□ 2.02
AP1S3-205ENST00000415298 SIN3AQ96ST3 1273 aa27.64■■■□□ 2.01
AP1S3-205ENST00000415298 MROH1Q8NDA8 1641 aa27.63■■■□□ 2.01
AP1S3-205ENST00000415298 DEPDC5O75140 1603 aa27.62■■■□□ 2.01
AP1S3-205ENST00000415298 KDM5DQ9BY66 1539 aa27.61■■■□□ 2.01
AP1S3-205ENST00000415298 BCL11BQ9C0K0 894 aaPredicted RBP27.61■■■□□ 2.01
AP1S3-205ENST00000415298 ARID4BQ4LE39 1312 aaPredicted RBP27.6■■■□□ 2.01
AP1S3-205ENST00000415298 BRPF3Q9ULD4 1205 aa27.59■■■□□ 2.01
AP1S3-205ENST00000415298 IQGAP3Q86VI3 1631 aa27.58■■■□□ 2
AP1S3-205ENST00000415298 REREQ9P2R6 1566 aa27.56■■■□□ 2
AP1S3-205ENST00000415298 RNF17Q9BXT8 1623 aaKnown RBP27.56■■■□□ 2
AP1S3-205ENST00000415298 PRDM15P57071 1507 aaPredicted RBP27.56■■■□□ 2
AP1S3-205ENST00000415298 BCORL1Q5H9F3 1711 aa27.55■■■□□ 2
AP1S3-205ENST00000415298 KANK1Q14678 1352 aa27.55■■■□□ 2
AP1S3-205ENST00000415298 USP35Q9P2H5 1018 aa27.54■■■□□ 2
AP1S3-205ENST00000415298 VWDEQ8N2E2 1590 aa27.53■■■□□ 2
AP1S3-205ENST00000415298 AGLP35573 1532 aa27.52■■■□□ 2
AP1S3-205ENST00000415298 CEP152O94986 1710 aa27.5■■□□□ 1.99
AP1S3-205ENST00000415298 ANKRD30BQ9BXX2 1392 aa27.5■■□□□ 1.99
AP1S3-205ENST00000415298 IPO9Q96P70 1041 aaKnown RBP27.47■■□□□ 1.99
AP1S3-205ENST00000415298 ABCC3O15438 1527 aa27.45■■□□□ 1.98
AP1S3-205ENST00000415298 FAM43AQ8N2R8 423 aa27.45■■□□□ 1.98
AP1S3-205ENST00000415298 E9PCH4 1651 aa27.45■■□□□ 1.98
AP1S3-205ENST00000415298 CFAP65Q6ZU64 1925 aaKnown RBP27.44■■□□□ 1.98
AP1S3-205ENST00000415298 ZBTB47Q9UFB7 747 aaPredicted RBP27.43■■□□□ 1.98
AP1S3-205ENST00000415298 TET3O43151 1660 aa27.42■■□□□ 1.98
AP1S3-205ENST00000415298 PLA2R1Q13018 1463 aa27.41■■□□□ 1.98
AP1S3-205ENST00000415298 NEFMP07197 916 aa27.4■■□□□ 1.98
AP1S3-205ENST00000415298 RRP9O43818 475 aaKnown RBP27.4■■□□□ 1.98
AP1S3-205ENST00000415298 LMTK2Q8IWU2 1503 aa27.39■■□□□ 1.98
AP1S3-205ENST00000415298 TAF7LQ5H9L4 462 aa27.39■■□□□ 1.97
AP1S3-205ENST00000415298 KLHL34Q8N239 644 aa27.39■■□□□ 1.97
AP1S3-205ENST00000415298 NPATQ14207 1427 aa27.38■■□□□ 1.97
AP1S3-205ENST00000415298 EFCAB6Q5THR3 1501 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms