RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.82■■□□□ 1.24
SHMT2-202ENST00000414700 EIF2AK4Q9P2K8 1649 aaKnown RBP22.82■■□□□ 1.24
SHMT2-202ENST00000414700 SIGLEC1Q9BZZ2 1709 aa22.79■■□□□ 1.24
SHMT2-202ENST00000414700 DEPDC5O75140 1603 aa22.79■■□□□ 1.24
SHMT2-202ENST00000414700 ARHGEF40Q8TER5 1519 aa22.79■■□□□ 1.24
SHMT2-202ENST00000414700 KDM5DQ9BY66 1539 aa22.79■■□□□ 1.24
SHMT2-202ENST00000414700 SLC4A1APQ9BWU0 796 aaKnown RBP22.79■■□□□ 1.24
SHMT2-202ENST00000414700 FOXD1Q16676 465 aa22.79■■□□□ 1.24
SHMT2-202ENST00000414700 ATP10AO60312 1499 aa22.78■■□□□ 1.24
SHMT2-202ENST00000414700 MROH1Q8NDA8 1641 aa22.78■■□□□ 1.24
SHMT2-202ENST00000414700 FAM135AQ9P2D6 1515 aa22.77■■□□□ 1.24
SHMT2-202ENST00000414700 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
SHMT2-202ENST00000414700 ACIN1Q9UKV3 1341 aaKnown RBP22.76■■□□□ 1.23
SHMT2-202ENST00000414700 IQGAP3Q86VI3 1631 aa22.75■■□□□ 1.23
SHMT2-202ENST00000414700 BCORL1Q5H9F3 1711 aa22.75■■□□□ 1.23
SHMT2-202ENST00000414700 RNF17Q9BXT8 1623 aaKnown RBP22.73■■□□□ 1.23
SHMT2-202ENST00000414700 PRDM15P57071 1507 aaPredicted RBP22.73■■□□□ 1.23
SHMT2-202ENST00000414700 GGT6Q6P531 493 aa22.72■■□□□ 1.23
SHMT2-202ENST00000414700 REREQ9P2R6 1566 aa22.72■■□□□ 1.23
SHMT2-202ENST00000414700 PKD2Q13563 968 aa22.71■■□□□ 1.23
SHMT2-202ENST00000414700 CLSPNQ9HAW4 1339 aa22.71■■□□□ 1.23
SHMT2-202ENST00000414700 VWDEQ8N2E2 1590 aa22.7■■□□□ 1.22
SHMT2-202ENST00000414700 SIN3AQ96ST3 1273 aa22.69■■□□□ 1.22
SHMT2-202ENST00000414700 CEP152O94986 1710 aa22.67■■□□□ 1.22
SHMT2-202ENST00000414700 AGLP35573 1532 aa22.66■■□□□ 1.22
SHMT2-202ENST00000414700 KANK1Q14678 1352 aa22.65■■□□□ 1.22
SHMT2-202ENST00000414700 ANKRD30BQ9BXX2 1392 aa22.64■■□□□ 1.21
SHMT2-202ENST00000414700 E9PCH4 1651 aa22.63■■□□□ 1.21
SHMT2-202ENST00000414700 NEUROD1Q13562 356 aa22.62■■□□□ 1.21
SHMT2-202ENST00000414700 TET3O43151 1660 aa22.62■■□□□ 1.21
SHMT2-202ENST00000414700 MYT1Q01538 1121 aa22.62■■□□□ 1.21
SHMT2-202ENST00000414700 MLECQ14165 292 aa22.61■■□□□ 1.21
SHMT2-202ENST00000414700 ABCC3O15438 1527 aa22.6■■□□□ 1.21
SHMT2-202ENST00000414700 WASHC2CQ9Y4E1 1318 aa22.59■■□□□ 1.21
SHMT2-202ENST00000414700 ARID4BQ4LE39 1312 aaPredicted RBP22.58■■□□□ 1.21
SHMT2-202ENST00000414700 LMTK2Q8IWU2 1503 aa22.58■■□□□ 1.2
SHMT2-202ENST00000414700 EFCAB6Q5THR3 1501 aa22.57■■□□□ 1.2
SHMT2-202ENST00000414700 CFAP65Q6ZU64 1925 aaKnown RBP22.57■■□□□ 1.2
SHMT2-202ENST00000414700 PLA2R1Q13018 1463 aa22.55■■□□□ 1.2
SHMT2-202ENST00000414700 CAMSAP1Q5T5Y3 1602 aa22.54■■□□□ 1.2
SHMT2-202ENST00000414700 ZC3H13Q5T200 1668 aaKnown RBP22.54■■□□□ 1.2
SHMT2-202ENST00000414700 NPATQ14207 1427 aa22.52■■□□□ 1.2
SHMT2-202ENST00000414700 CLTCQ00610 1675 aaKnown RBP22.51■■□□□ 1.19
SHMT2-202ENST00000414700 SPHKAPQ2M3C7 1700 aa22.5■■□□□ 1.19
SHMT2-202ENST00000414700 RPRD2Q5VT52 1461 aaKnown RBP22.49■■□□□ 1.19
SHMT2-202ENST00000414700 PTPRTO14522 1441 aa22.46■■□□□ 1.19
SHMT2-202ENST00000414700 PPP6R1Q9UPN7 881 aa22.45■■□□□ 1.18
SHMT2-202ENST00000414700 CCDC144AA2RUR9 1427 aa22.44■■□□□ 1.18
SHMT2-202ENST00000414700 TRPM2O94759 1503 aa22.44■■□□□ 1.18
SHMT2-202ENST00000414700 UGGT1Q9NYU2 1555 aa22.44■■□□□ 1.18
SHMT2-202ENST00000414700 ARHGAP31Q2M1Z3 1444 aa22.43■■□□□ 1.18
SHMT2-202ENST00000414700 TONSLQ96HA7 1378 aa22.43■■□□□ 1.18
SHMT2-202ENST00000414700 CLTCL1P53675 1640 aa22.41■■□□□ 1.18
SHMT2-202ENST00000414700 FBXO31Q5XUX0 539 aaPredicted RBP22.4■■□□□ 1.18
SHMT2-202ENST00000414700 ESF1Q9H501 851 aaKnown RBP22.4■■□□□ 1.18
SHMT2-202ENST00000414700 PREX1Q8TCU6 1659 aa22.39■■□□□ 1.18
SHMT2-202ENST00000414700 FER1L4A9Z1Z3 1794 aa22.39■■□□□ 1.17
SHMT2-202ENST00000414700 NOS1P29475 1434 aa22.38■■□□□ 1.17
SHMT2-202ENST00000414700 L3MBTL2Q969R5 705 aa22.38■■□□□ 1.17
SHMT2-202ENST00000414700 SYNMO15061 1565 aa22.38■■□□□ 1.17
SHMT2-202ENST00000414700 ZMYM3Q14202 1370 aa22.37■■□□□ 1.17
SHMT2-202ENST00000414700 TIMELESSQ9UNS1 1208 aa22.36■■□□□ 1.17
SHMT2-202ENST00000414700 CNTLNQ9NXG0 1405 aa22.35■■□□□ 1.17
SHMT2-202ENST00000414700 MADDQ8WXG6 1647 aa22.34■■□□□ 1.17
SHMT2-202ENST00000414700 ERVK-7P63135 1459 aa22.34■■□□□ 1.17
SHMT2-202ENST00000414700 MROH2AA6NES4 1674 aa22.33■■□□□ 1.17
SHMT2-202ENST00000414700 RGL3Q3MIN7 710 aa22.33■■□□□ 1.16
SHMT2-202ENST00000414700 PPP1R15AO75807 674 aaPredicted RBP22.31■■□□□ 1.16
SHMT2-202ENST00000414700 CEBPAP49715 358 aaPredicted RBP22.31■■□□□ 1.16
SHMT2-202ENST00000414700 PIK3C2BO00750 1634 aa22.31■■□□□ 1.16
SHMT2-202ENST00000414700 SPATA31E1Q6ZUB1 1445 aa22.31■■□□□ 1.16
SHMT2-202ENST00000414700 ADAMTSL3P82987 1691 aa22.31■■□□□ 1.16
SHMT2-202ENST00000414700 C3P01024 1663 aa22.3■■□□□ 1.16
SHMT2-202ENST00000414700 KIF1BO60333 1816 aa22.3■■□□□ 1.16
SHMT2-202ENST00000414700 SPATA31D1Q6ZQQ2 1576 aa22.29■■□□□ 1.16
SHMT2-202ENST00000414700 RIMS1Q86UR5 1692 aaKnown RBP22.29■■□□□ 1.16
SHMT2-202ENST00000414700 IDI1Q13907 227 aa22.28■■□□□ 1.16
SHMT2-202ENST00000414700 PLPPR3Q6T4P5 718 aa22.28■■□□□ 1.16
SHMT2-202ENST00000414700 DCAF11Q8TEB1 546 aa22.25■■□□□ 1.15
SHMT2-202ENST00000414700 CHGAP10645 457 aaKnown RBP22.24■■□□□ 1.15
SHMT2-202ENST00000414700 KDM2AQ9Y2K7 1162 aa22.23■■□□□ 1.15
SHMT2-202ENST00000414700 MYO5BQ9ULV0 1848 aa22.23■■□□□ 1.15
SHMT2-202ENST00000414700 ADGRB3O60242 1522 aa22.23■■□□□ 1.15
SHMT2-202ENST00000414700 SLC52A1Q9NWF4 448 aa22.23■■□□□ 1.15
SHMT2-202ENST00000414700 NBPF8Q3BBV2 869 aa22.22■■□□□ 1.15
SHMT2-202ENST00000414700 NEURL4Q96JN8 1562 aa22.2■■□□□ 1.14
SHMT2-202ENST00000414700 ZNF326Q5BKZ1 582 aaKnown RBP22.19■■□□□ 1.14
SHMT2-202ENST00000414700 TMEM131LA2VDJ0 1609 aa22.19■■□□□ 1.14
SHMT2-202ENST00000414700 TNRQ92752 1358 aa22.19■■□□□ 1.14
SHMT2-202ENST00000414700 IFT172Q9UG01 1749 aa22.16■■□□□ 1.14
SHMT2-202ENST00000414700 PPLO60437 1756 aa22.13■■□□□ 1.13
SHMT2-202ENST00000414700 UHRF1BP1Q6BDS2 1440 aa22.13■■□□□ 1.13
SHMT2-202ENST00000414700 PRAG1Q86YV5 1406 aa22.12■■□□□ 1.13
SHMT2-202ENST00000414700 PTPRMP28827 1452 aa22.11■■□□□ 1.13
SHMT2-202ENST00000414700 NUTM2DQ5VT03 806 aaPredicted RBP22.11■■□□□ 1.13
SHMT2-202ENST00000414700 STAG3Q9UJ98 1225 aa22.11■■□□□ 1.13
SHMT2-202ENST00000414700 A2ML1A8K2U0 1454 aa22.1■■□□□ 1.13
SHMT2-202ENST00000414700 NEXMIFQ5QGS0 1516 aa22.1■■□□□ 1.13
SHMT2-202ENST00000414700 UBR1Q8IWV7 1749 aa22.09■■□□□ 1.13
SHMT2-202ENST00000414700 ADGRF5Q8IZF2 1346 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms