RNA–Protein interactions for RNA: ENST00000412218.1

LINC01643-201, Transcript of long intergenic non-protein coding RNA 1643, humanhuman

TSL 5 BASIC

Gene LINC01643, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01643-201ENST00000412218 RNF17Q9BXT8 1623 aaKnown RBP15.87■□□□□ 0.13
LINC01643-201ENST00000412218 EIF2AK4Q9P2K8 1649 aaKnown RBP15.87■□□□□ 0.13
LINC01643-201ENST00000412218 NCOA1Q15788 1441 aa15.87■□□□□ 0.13
LINC01643-201ENST00000412218 CROCC2H7BZ55 1655 aa15.87■□□□□ 0.13
LINC01643-201ENST00000412218 ZNF142P52746 1687 aaPredicted RBP15.87■□□□□ 0.13
LINC01643-201ENST00000412218 ABCC5O15440 1437 aa15.86■□□□□ 0.13
LINC01643-201ENST00000412218 PZPP20742 1482 aa15.85■□□□□ 0.13
LINC01643-201ENST00000412218 CEP170BQ9Y4F5 1589 aaPredicted RBP15.85■□□□□ 0.13
LINC01643-201ENST00000412218 DNMT1P26358 1616 aaKnown RBP15.85■□□□□ 0.13
LINC01643-201ENST00000412218 DAPK1P53355 1430 aa15.85■□□□□ 0.13
LINC01643-201ENST00000412218 DUOX2Q9NRD8 1548 aa15.84■□□□□ 0.13
LINC01643-201ENST00000412218 CAMSAP1Q5T5Y3 1602 aa15.84■□□□□ 0.13
LINC01643-201ENST00000412218 DMRT2Q9Y5R5 561 aa15.84■□□□□ 0.13
LINC01643-201ENST00000412218 PTPRTO14522 1441 aa15.84■□□□□ 0.13
LINC01643-201ENST00000412218 MROH1Q8NDA8 1641 aa15.83■□□□□ 0.13
LINC01643-201ENST00000412218 FBXO41Q8TF61 875 aa15.83■□□□□ 0.12
LINC01643-201ENST00000412218 WASHC2CQ9Y4E1 1318 aa15.83■□□□□ 0.12
LINC01643-201ENST00000412218 KIF15Q9NS87 1388 aa15.82■□□□□ 0.12
LINC01643-201ENST00000412218 ABCC3O15438 1527 aa15.82■□□□□ 0.12
LINC01643-201ENST00000412218 ZC3H13Q5T200 1668 aaKnown RBP15.82■□□□□ 0.12
LINC01643-201ENST00000412218 PLA2R1Q13018 1463 aa15.81■□□□□ 0.12
LINC01643-201ENST00000412218 A2ML1A8K2U0 1454 aa15.8■□□□□ 0.12
LINC01643-201ENST00000412218 ERBINQ96RT1 1412 aa15.8■□□□□ 0.12
LINC01643-201ENST00000412218 TNRQ92752 1358 aa15.8■□□□□ 0.12
LINC01643-201ENST00000412218 PRDM15P57071 1507 aaPredicted RBP15.78■□□□□ 0.12
LINC01643-201ENST00000412218 FBXO31Q5XUX0 539 aaPredicted RBP15.78■□□□□ 0.12
LINC01643-201ENST00000412218 CERKQ8TCT0 537 aa15.77■□□□□ 0.12
LINC01643-201ENST00000412218 RRP7BPQ9NSQ0 103 aa15.76■□□□□ 0.11
LINC01643-201ENST00000412218 ANKRD30AQ9BXX3 1397 aa15.75■□□□□ 0.11
LINC01643-201ENST00000412218 SPATA31D1Q6ZQQ2 1576 aa15.75■□□□□ 0.11
LINC01643-201ENST00000412218 ADGRL2O95490 1459 aa15.75■□□□□ 0.11
LINC01643-201ENST00000412218 NLRP1Q9C000 1473 aa15.75■□□□□ 0.11
LINC01643-201ENST00000412218 DEPDC5O75140 1603 aa15.75■□□□□ 0.11
LINC01643-201ENST00000412218 NCKAP5LQ9HCH0 1330 aa15.74■□□□□ 0.11
LINC01643-201ENST00000412218 PKD2Q13563 968 aa15.74■□□□□ 0.11
LINC01643-201ENST00000412218 CEP152O94986 1710 aa15.74■□□□□ 0.11
LINC01643-201ENST00000412218 ERVK-7P63135 1459 aa15.73■□□□□ 0.11
LINC01643-201ENST00000412218 LTBP4Q8N2S1 1624 aa15.72■□□□□ 0.11
LINC01643-201ENST00000412218 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
LINC01643-201ENST00000412218 FAM50AQ14320 339 aaKnown RBP15.71■□□□□ 0.11
LINC01643-201ENST00000412218 ARHGAP31Q2M1Z3 1444 aa15.7■□□□□ 0.1
LINC01643-201ENST00000412218 NEURL4Q96JN8 1562 aa15.7■□□□□ 0.1
LINC01643-201ENST00000412218 UGGT1Q9NYU2 1555 aa15.7■□□□□ 0.1
LINC01643-201ENST00000412218 VWDEQ8N2E2 1590 aa15.69■□□□□ 0.1
LINC01643-201ENST00000412218 LMTK2Q8IWU2 1503 aa15.68■□□□□ 0.1
LINC01643-201ENST00000412218 POLR1AO95602 1720 aaPredicted RBP15.68■□□□□ 0.1
LINC01643-201ENST00000412218 KANK1Q14678 1352 aa15.67■□□□□ 0.1
LINC01643-201ENST00000412218 IQSEC2Q5JU85 1478 aa15.66■□□□□ 0.1
LINC01643-201ENST00000412218 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.66■□□□□ 0.1
LINC01643-201ENST00000412218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.66■□□□□ 0.1
LINC01643-201ENST00000412218 SENP3Q9H4L4 574 aaPredicted RBP15.66■□□□□ 0.1
LINC01643-201ENST00000412218 ZNF335Q9H4Z2 1342 aaPredicted RBP15.66■□□□□ 0.1
LINC01643-201ENST00000412218 THEMISQ8N1K5 641 aaPredicted RBP15.65■□□□□ 0.1
LINC01643-201ENST00000412218 ANKRD50Q9ULJ7 1429 aa15.65■□□□□ 0.1
LINC01643-201ENST00000412218 EFCAB6Q5THR3 1501 aa15.63■□□□□ 0.09
LINC01643-201ENST00000412218 MED14O60244 1454 aa15.63■□□□□ 0.09
LINC01643-201ENST00000412218 ANKLE2Q86XL3 938 aa15.62■□□□□ 0.09
LINC01643-201ENST00000412218 UBR1Q8IWV7 1749 aa15.62■□□□□ 0.09
LINC01643-201ENST00000412218 ROCK1Q13464 1354 aa15.62■□□□□ 0.09
LINC01643-201ENST00000412218 NPHP4O75161 1426 aaPredicted RBP15.6■□□□□ 0.09
LINC01643-201ENST00000412218 PPARGC1BQ86YN6 1023 aaKnown RBP15.6■□□□□ 0.09
LINC01643-201ENST00000412218 UNC13BO14795 1591 aa15.59■□□□□ 0.09
LINC01643-201ENST00000412218 ARHGAP23Q9P227 1491 aa15.59■□□□□ 0.09
LINC01643-201ENST00000412218 SLIT1O75093 1534 aa15.58■□□□□ 0.09
LINC01643-201ENST00000412218 SYNMO15061 1565 aa15.58■□□□□ 0.09
LINC01643-201ENST00000412218 IQGAP1P46940 1657 aa15.58■□□□□ 0.08
LINC01643-201ENST00000412218 NOS1P29475 1434 aa15.58■□□□□ 0.08
LINC01643-201ENST00000412218 PIK3C2BO00750 1634 aa15.57■□□□□ 0.08
LINC01643-201ENST00000412218 RPRD2Q5VT52 1461 aaKnown RBP15.57■□□□□ 0.08
LINC01643-201ENST00000412218 SCAF11Q99590 1463 aaKnown RBP15.56■□□□□ 0.08
LINC01643-201ENST00000412218 CPS1P31327 1500 aa15.56■□□□□ 0.08
LINC01643-201ENST00000412218 TET3O43151 1660 aa15.55■□□□□ 0.08
LINC01643-201ENST00000412218 KDM5AP29375 1690 aaKnown RBP15.55■□□□□ 0.08
LINC01643-201ENST00000412218 RRBP1Q9P2E9 1410 aaKnown RBP15.54■□□□□ 0.08
LINC01643-201ENST00000412218 ADGRB3O60242 1522 aa15.53■□□□□ 0.08
LINC01643-201ENST00000412218 TMEM2Q9UHN6 1383 aa15.52■□□□□ 0.08
LINC01643-201ENST00000412218 GCC2Q8IWJ2 1684 aa15.52■□□□□ 0.08
LINC01643-201ENST00000412218 ITGAEP38570 1179 aa15.52■□□□□ 0.08
LINC01643-201ENST00000412218 IDI1Q13907 227 aa15.52■□□□□ 0.08
LINC01643-201ENST00000412218 IQGAP3Q86VI3 1631 aa15.52■□□□□ 0.08
LINC01643-201ENST00000412218 CFAP65Q6ZU64 1925 aaKnown RBP15.52■□□□□ 0.07
LINC01643-201ENST00000412218 LTKP29376 864 aa15.51■□□□□ 0.07
LINC01643-201ENST00000412218 TXNDC2Q86VQ3 553 aa15.5■□□□□ 0.07
LINC01643-201ENST00000412218 SLC52A1Q9NWF4 448 aa15.49■□□□□ 0.07
LINC01643-201ENST00000412218 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
LINC01643-201ENST00000412218 EID1Q9Y6B2 187 aa15.48■□□□□ 0.07
LINC01643-201ENST00000412218 E9PCH4 1651 aa15.48■□□□□ 0.07
LINC01643-201ENST00000412218 UBAP1LF5GYI3 381 aa15.47■□□□□ 0.07
LINC01643-201ENST00000412218 STRCP1A6NGW2 1772 aa15.46■□□□□ 0.07
LINC01643-201ENST00000412218 NUP155O75694 1391 aa15.46■□□□□ 0.07
LINC01643-201ENST00000412218 LRRC7Q96NW7 1537 aa15.45■□□□□ 0.06
LINC01643-201ENST00000412218 TMEM131LA2VDJ0 1609 aa15.44■□□□□ 0.06
LINC01643-201ENST00000412218 PHF23Q9BUL5 403 aaPredicted RBP15.44■□□□□ 0.06
LINC01643-201ENST00000412218 ZFYVE9O95405 1425 aa15.43■□□□□ 0.06
LINC01643-201ENST00000412218 NAIPQ13075 1403 aa15.43■□□□□ 0.06
LINC01643-201ENST00000412218 ALKQ9UM73 1620 aa15.42■□□□□ 0.06
LINC01643-201ENST00000412218 RIMS2Q9UQ26 1411 aa15.4■□□□□ 0.06
LINC01643-201ENST00000412218 TOM1O60784 492 aa15.39■□□□□ 0.05
LINC01643-201ENST00000412218 HFM1A2PYH4 1435 aa15.39■□□□□ 0.05
LINC01643-201ENST00000412218 MYO5BQ9ULV0 1848 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms