RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 RTN4Q9NQC3 1192 aaKnown RBP5.62□□□□□ -1.51
PTPN13-202ENST00000411767 LEKR1Q6ZMV7 388 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC146Q8IYE0 955 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 WDR66Q8TBY9 1149 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 TRIM63Q969Q1 353 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 PODXL2Q9NZ53 605 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 CCAR2Q8N163 923 aaKnown RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 BMS1Q14692 1282 aaKnown RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 WWC2Q6AWC2 1192 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 RAB3IL1Q8TBN0 382 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 SUDS3Q9H7L9 328 aaPredicted RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC91Q7Z6B0 441 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 R3HCC1Q9Y3T6 440 aaKnown RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 DNAJC2Q99543 621 aaKnown RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 NASPP49321 788 aaPredicted RBP5.61□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC27Q2M243 656 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 SMC6Q96SB8 1091 aa5.61□□□□□ -1.51
PTPN13-202ENST00000411767 SLC26A8Q96RN1 970 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC39Q9UFE4 941 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 SMC1AQ14683 1233 aaKnown RBP5.6□□□□□ -1.51
PTPN13-202ENST00000411767 KIAA1211Q6ZU35 1233 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 HOMEZQ8IX15 550 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 VSIG10Q8N0Z9 540 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 KIF3CO14782 793 aa5.6□□□□□ -1.51
PTPN13-202ENST00000411767 POLR3GO15318 223 aaPredicted RBP5.6□□□□□ -1.51
PTPN13-202ENST00000411767 SSR1P43307 286 aaKnown RBP5.59□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC96Q2M329 555 aa5.59□□□□□ -1.51
PTPN13-202ENST00000411767 MAPK8IP3Q9UPT6 1336 aa5.59□□□□□ -1.51
PTPN13-202ENST00000411767 PMFBP1Q8TBY8 1022 aa5.59□□□□□ -1.51
PTPN13-202ENST00000411767 HOOK1Q9UJC3 728 aaKnown RBP5.59□□□□□ -1.51
PTPN13-202ENST00000411767 OFD1O75665 1012 aa5.59□□□□□ -1.51
PTPN13-202ENST00000411767 VPS53Q5VIR6 699 aa5.59□□□□□ -1.51
PTPN13-202ENST00000411767 TMC1Q8TDI8 760 aa5.59□□□□□ -1.52
PTPN13-202ENST00000411767 SWAP70Q9UH65 585 aa5.59□□□□□ -1.52
PTPN13-202ENST00000411767 AKAP17AQ02040 695 aaKnown RBP5.58□□□□□ -1.52
PTPN13-202ENST00000411767 OPA1O60313 960 aa5.58□□□□□ -1.52
PTPN13-202ENST00000411767 RWDD1Q9H446 243 aaPredicted RBP5.58□□□□□ -1.52
PTPN13-202ENST00000411767 ENOX2Q16206 610 aaKnown RBP5.58□□□□□ -1.52
PTPN13-202ENST00000411767 DESP17661 470 aa5.58□□□□□ -1.52
PTPN13-202ENST00000411767 PPP1R9BQ96SB3 815 aa5.58□□□□□ -1.52
PTPN13-202ENST00000411767 FAM184BQ9ULE4 1060 aa5.58□□□□□ -1.52
PTPN13-202ENST00000411767 NOP58Q9Y2X3 529 aaKnown RBP5.58□□□□□ -1.52
PTPN13-202ENST00000411767 RSPH4AQ5TD94 716 aa5.58□□□□□ -1.52
PTPN13-202ENST00000411767 ANKRD62A6NC57 917 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 ZMAT2Q96NC0 199 aaKnown RBP5.57□□□□□ -1.52
PTPN13-202ENST00000411767 WWC1Q8IX03 1113 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 CHMP2AO43633 222 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 ERLIN1O75477 346 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 HNRNPUQ00839 825 aaKnown RBP eCLIP5.57□□□□□ -1.52
PTPN13-202ENST00000411767 BCL2L13Q9BXK5 485 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 STK31Q9BXU1 1019 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 TXLNBQ8N3L3 684 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 GOLGA6L9A6NEM1 432 aa5.57□□□□□ -1.52
PTPN13-202ENST00000411767 CTDP1Q9Y5B0 961 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-202ENST00000411767 MPHOSPH10O00566 681 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 POLE3Q9NRF9 147 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 ZNHIT6Q9NWK9 470 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 DDX11L8A8MPP1 907 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 PCMTD1Q96MG8 357 aaPredicted RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 ITPRIPQ8IWB1 547 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 CFAP45Q9UL16 551 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 TCERG1O14776 1098 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 NUCB2P80303 420 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 ZBTB7CA1YPR0 619 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 NOL3O60936 208 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 DDX46Q7L014 1031 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 CCDC43Q96MW1 224 aaKnown RBP5.56□□□□□ -1.52
PTPN13-202ENST00000411767 DNAI2Q9GZS0 605 aa5.56□□□□□ -1.52
PTPN13-202ENST00000411767 TIGD1Q96MW7 591 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 GIMAP4Q9NUV9 329 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 CENPJQ9HC77 1338 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-202ENST00000411767 ATP6V1E1P36543 226 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 GPATCH3Q96I76 525 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 PRKCSHP14314 528 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-202ENST00000411767 CENPQQ7L2Z9 268 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-202ENST00000411767 PPFIBP2Q8ND30 876 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 PSMD1Q99460 953 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 HOMER2Q9NSB8 354 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 DDX11Q96FC9 970 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 STMN1P16949 149 aa5.55□□□□□ -1.52
PTPN13-202ENST00000411767 TRIM21P19474 475 aaKnown RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 CCDC174Q6PII3 467 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 DZIP1Q86YF9 867 aaKnown RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 CCDC180Q9P1Z9 1646 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 ZNF853P0CG23 659 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 ZNF622Q969S3 477 aaKnown RBP eCLIP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 CBX1P83916 185 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 CWC22Q9HCG8 908 aaKnown RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 G3V3G9 751 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 SLU7O95391 586 aaKnown RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 TERF1P54274 439 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 DCAF8Q5TAQ9 597 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 RNF20Q5VTR2 975 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 NAP1L3Q99457 506 aaPredicted RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 SH3BGRP55822 239 aaPredicted RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 EPB41L2O43491 1005 aaKnown RBP5.54□□□□□ -1.52
PTPN13-202ENST00000411767 MAP3K9P80192 1104 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 ZFYVE27Q5T4F4 411 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 PDCL2Q8N4E4 241 aa5.54□□□□□ -1.52
PTPN13-202ENST00000411767 BBXQ8WY36 941 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms