RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 CLTCQ00610 1675 aaKnown RBP16.88■□□□□ 0.29
LINC00539-201ENST00000411525 GCC2Q8IWJ2 1684 aa16.88■□□□□ 0.29
LINC00539-201ENST00000411525 NCOA1Q15788 1441 aa16.87■□□□□ 0.29
LINC00539-201ENST00000411525 SHANK2Q9UPX8 1470 aa16.86■□□□□ 0.29
LINC00539-201ENST00000411525 CAMSAP1Q5T5Y3 1602 aa16.85■□□□□ 0.29
LINC00539-201ENST00000411525 GGT6Q6P531 493 aa16.84■□□□□ 0.29
LINC00539-201ENST00000411525 HFM1A2PYH4 1435 aa16.84■□□□□ 0.29
LINC00539-201ENST00000411525 SETD5Q9C0A6 1442 aa16.84■□□□□ 0.29
LINC00539-201ENST00000411525 CCDC141Q6ZP82 1450 aa16.84■□□□□ 0.29
LINC00539-201ENST00000411525 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
LINC00539-201ENST00000411525 RTEL1-TNFRSF6BF6WH68 1400 aa16.83■□□□□ 0.28
LINC00539-201ENST00000411525 ZNF142P52746 1687 aaPredicted RBP16.83■□□□□ 0.28
LINC00539-201ENST00000411525 IQSEC2Q5JU85 1478 aa16.82■□□□□ 0.28
LINC00539-201ENST00000411525 ROCK1Q13464 1354 aa16.82■□□□□ 0.28
LINC00539-201ENST00000411525 MYO3AQ8NEV4 1616 aa16.81■□□□□ 0.28
LINC00539-201ENST00000411525 ADGRL2O95490 1459 aa16.81■□□□□ 0.28
LINC00539-201ENST00000411525 RAB3GAP2Q9H2M9 1393 aa16.81■□□□□ 0.28
LINC00539-201ENST00000411525 RSPH4AQ5TD94 716 aa16.81■□□□□ 0.28
LINC00539-201ENST00000411525 NAIPQ13075 1403 aa16.8■□□□□ 0.28
LINC00539-201ENST00000411525 PKD2Q13563 968 aa16.8■□□□□ 0.28
LINC00539-201ENST00000411525 LTBP4Q8N2S1 1624 aa16.8■□□□□ 0.28
LINC00539-201ENST00000411525 MAST1Q9Y2H9 1570 aa16.8■□□□□ 0.28
LINC00539-201ENST00000411525 PLA2R1Q13018 1463 aa16.8■□□□□ 0.28
LINC00539-201ENST00000411525 DHX29Q7Z478 1369 aaKnown RBP16.78■□□□□ 0.28
LINC00539-201ENST00000411525 CEP170BQ9Y4F5 1589 aaPredicted RBP16.78■□□□□ 0.28
LINC00539-201ENST00000411525 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.28
LINC00539-201ENST00000411525 FAM135AQ9P2D6 1515 aa16.75■□□□□ 0.27
LINC00539-201ENST00000411525 NCKAP5LQ9HCH0 1330 aa16.74■□□□□ 0.27
LINC00539-201ENST00000411525 RRP7BPQ9NSQ0 103 aa16.73■□□□□ 0.27
LINC00539-201ENST00000411525 ANKRD30AQ9BXX3 1397 aa16.73■□□□□ 0.27
LINC00539-201ENST00000411525 A2ML1A8K2U0 1454 aa16.73■□□□□ 0.27
LINC00539-201ENST00000411525 KIF3BO15066 747 aa16.72■□□□□ 0.27
LINC00539-201ENST00000411525 TSPY4P0CV99 314 aa16.72■□□□□ 0.27
LINC00539-201ENST00000411525 TSPY10P0CW01 314 aa16.72■□□□□ 0.27
LINC00539-201ENST00000411525 HRCP23327 699 aa16.72■□□□□ 0.27
LINC00539-201ENST00000411525 CCER1Q8TC90 406 aaPredicted RBP16.72■□□□□ 0.27
LINC00539-201ENST00000411525 DISP3Q9P2K9 1392 aa16.71■□□□□ 0.27
LINC00539-201ENST00000411525 KDM5DQ9BY66 1539 aa16.7■□□□□ 0.26
LINC00539-201ENST00000411525 DHX57Q6P158 1386 aaKnown RBP16.7■□□□□ 0.26
LINC00539-201ENST00000411525 WASHC2CQ9Y4E1 1318 aa16.7■□□□□ 0.26
LINC00539-201ENST00000411525 ZNF335Q9H4Z2 1342 aaPredicted RBP16.69■□□□□ 0.26
LINC00539-201ENST00000411525 PZPP20742 1482 aa16.68■□□□□ 0.26
LINC00539-201ENST00000411525 POLR1AO95602 1720 aaPredicted RBP16.68■□□□□ 0.26
LINC00539-201ENST00000411525 TNRQ92752 1358 aa16.67■□□□□ 0.26
LINC00539-201ENST00000411525 KIF15Q9NS87 1388 aa16.67■□□□□ 0.26
LINC00539-201ENST00000411525 UBAP1LF5GYI3 381 aa16.65■□□□□ 0.26
LINC00539-201ENST00000411525 SPATA31D1Q6ZQQ2 1576 aa16.64■□□□□ 0.25
LINC00539-201ENST00000411525 ANKRD50Q9ULJ7 1429 aa16.64■□□□□ 0.25
LINC00539-201ENST00000411525 FBXO31Q5XUX0 539 aaPredicted RBP16.64■□□□□ 0.25
LINC00539-201ENST00000411525 DUOX2Q9NRD8 1548 aa16.64■□□□□ 0.25
LINC00539-201ENST00000411525 NLRP1Q9C000 1473 aa16.63■□□□□ 0.25
LINC00539-201ENST00000411525 THEMISQ8N1K5 641 aaPredicted RBP16.63■□□□□ 0.25
LINC00539-201ENST00000411525 ACIN1Q9UKV3 1341 aaKnown RBP16.63■□□□□ 0.25
LINC00539-201ENST00000411525 ZEB1P37275 1124 aaPredicted RBP16.62■□□□□ 0.25
LINC00539-201ENST00000411525 ANKLE2Q86XL3 938 aa16.62■□□□□ 0.25
LINC00539-201ENST00000411525 ZC3H13Q5T200 1668 aaKnown RBP16.62■□□□□ 0.25
LINC00539-201ENST00000411525 RNF17Q9BXT8 1623 aaKnown RBP16.61■□□□□ 0.25
LINC00539-201ENST00000411525 EIF2AK4Q9P2K8 1649 aaKnown RBP16.61■□□□□ 0.25
LINC00539-201ENST00000411525 CLSPNQ9HAW4 1339 aa16.61■□□□□ 0.25
LINC00539-201ENST00000411525 CPS1P31327 1500 aa16.6■□□□□ 0.25
LINC00539-201ENST00000411525 ERBINQ96RT1 1412 aa16.6■□□□□ 0.25
LINC00539-201ENST00000411525 UGGT1Q9NYU2 1555 aa16.6■□□□□ 0.25
LINC00539-201ENST00000411525 NEURL4Q96JN8 1562 aa16.59■□□□□ 0.25
LINC00539-201ENST00000411525 ILDR2Q71H61 639 aa16.58■□□□□ 0.24
LINC00539-201ENST00000411525 UNC13BO14795 1591 aa16.58■□□□□ 0.24
LINC00539-201ENST00000411525 DEPDC5O75140 1603 aa16.58■□□□□ 0.24
LINC00539-201ENST00000411525 CFAP65Q6ZU64 1925 aaKnown RBP16.57■□□□□ 0.24
LINC00539-201ENST00000411525 SOCS7O14512 581 aa16.57■□□□□ 0.24
LINC00539-201ENST00000411525 TOM1O60784 492 aa16.56■□□□□ 0.24
LINC00539-201ENST00000411525 ABCC3O15438 1527 aa16.55■□□□□ 0.24
LINC00539-201ENST00000411525 MED14O60244 1454 aa16.55■□□□□ 0.24
LINC00539-201ENST00000411525 TRIM52Q96A61 297 aa16.54■□□□□ 0.24
LINC00539-201ENST00000411525 NPHP4O75161 1426 aaPredicted RBP16.53■□□□□ 0.24
LINC00539-201ENST00000411525 IQGAP1P46940 1657 aa16.53■□□□□ 0.24
LINC00539-201ENST00000411525 CEP152O94986 1710 aa16.52■□□□□ 0.24
LINC00539-201ENST00000411525 ERVK-7P63135 1459 aa16.51■□□□□ 0.23
LINC00539-201ENST00000411525 VWDEQ8N2E2 1590 aa16.51■□□□□ 0.23
LINC00539-201ENST00000411525 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
LINC00539-201ENST00000411525 IQGAP3Q86VI3 1631 aa16.5■□□□□ 0.23
LINC00539-201ENST00000411525 MROH1Q8NDA8 1641 aa16.5■□□□□ 0.23
LINC00539-201ENST00000411525 PIP4K2BP78356 416 aa16.48■□□□□ 0.23
LINC00539-201ENST00000411525 UBR1Q8IWV7 1749 aa16.48■□□□□ 0.23
LINC00539-201ENST00000411525 MPHOSPH9Q99550 1183 aa16.47■□□□□ 0.23
LINC00539-201ENST00000411525 NUP155O75694 1391 aa16.47■□□□□ 0.23
LINC00539-201ENST00000411525 ARHGAP31Q2M1Z3 1444 aa16.46■□□□□ 0.23
LINC00539-201ENST00000411525 PRDM15P57071 1507 aaPredicted RBP16.46■□□□□ 0.23
LINC00539-201ENST00000411525 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
LINC00539-201ENST00000411525 KANK1Q14678 1352 aa16.44■□□□□ 0.22
LINC00539-201ENST00000411525 HSPA1LP34931 641 aa16.44■□□□□ 0.22
LINC00539-201ENST00000411525 SYNMO15061 1565 aa16.43■□□□□ 0.22
LINC00539-201ENST00000411525 SCAF11Q99590 1463 aaKnown RBP16.43■□□□□ 0.22
LINC00539-201ENST00000411525 STRCP1A6NGW2 1772 aa16.42■□□□□ 0.22
LINC00539-201ENST00000411525 SLIT1O75093 1534 aa16.41■□□□□ 0.22
LINC00539-201ENST00000411525 EID1Q9Y6B2 187 aa16.41■□□□□ 0.22
LINC00539-201ENST00000411525 TXNDC2Q86VQ3 553 aa16.4■□□□□ 0.22
LINC00539-201ENST00000411525 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
LINC00539-201ENST00000411525 ARHGAP23Q9P227 1491 aa16.4■□□□□ 0.22
LINC00539-201ENST00000411525 KDM5AP29375 1690 aaKnown RBP16.4■□□□□ 0.22
LINC00539-201ENST00000411525 LRRC7Q96NW7 1537 aa16.4■□□□□ 0.22
LINC00539-201ENST00000411525 STAG3Q9UJ98 1225 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms