RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RNF17Q9BXT8 1623 aaKnown RBP29.66■■■□□ 2.34
SF3A1-202ENST00000411423 STRCQ7RTU9 1775 aa29.64■■■□□ 2.34
SF3A1-202ENST00000411423 MROH1Q8NDA8 1641 aa29.64■■■□□ 2.34
SF3A1-202ENST00000411423 EIF2AK4Q9P2K8 1649 aaKnown RBP29.63■■■□□ 2.33
SF3A1-202ENST00000411423 DUOX2Q9NRD8 1548 aa29.63■■■□□ 2.33
SF3A1-202ENST00000411423 KIF15Q9NS87 1388 aa29.63■■■□□ 2.33
SF3A1-202ENST00000411423 PPARGC1BQ86YN6 1023 aaKnown RBP29.62■■■□□ 2.33
SF3A1-202ENST00000411423 RRP7BPQ9NSQ0 103 aa29.61■■■□□ 2.33
SF3A1-202ENST00000411423 FAM135AQ9P2D6 1515 aa29.61■■■□□ 2.33
SF3A1-202ENST00000411423 MYO3AQ8NEV4 1616 aa29.6■■■□□ 2.33
SF3A1-202ENST00000411423 CHIC2Q9UKJ5 165 aa29.59■■■□□ 2.33
SF3A1-202ENST00000411423 FBXO31Q5XUX0 539 aaPredicted RBP29.58■■■□□ 2.33
SF3A1-202ENST00000411423 WASHC2CQ9Y4E1 1318 aa29.58■■■□□ 2.33
SF3A1-202ENST00000411423 ABCC3O15438 1527 aa29.56■■■□□ 2.32
SF3A1-202ENST00000411423 PZPP20742 1482 aa29.56■■■□□ 2.32
SF3A1-202ENST00000411423 FAM50AQ14320 339 aaKnown RBP29.56■■■□□ 2.32
SF3A1-202ENST00000411423 ZNF142P52746 1687 aaPredicted RBP29.54■■■□□ 2.32
SF3A1-202ENST00000411423 NCOA1Q15788 1441 aa29.53■■■□□ 2.32
SF3A1-202ENST00000411423 ERBINQ96RT1 1412 aa29.53■■■□□ 2.32
SF3A1-202ENST00000411423 CEP170BQ9Y4F5 1589 aaPredicted RBP29.52■■■□□ 2.32
SF3A1-202ENST00000411423 ADGRL2O95490 1459 aa29.51■■■□□ 2.31
SF3A1-202ENST00000411423 ILDR1Q86SU0 546 aaPredicted RBP29.51■■■□□ 2.31
SF3A1-202ENST00000411423 CAMSAP1Q5T5Y3 1602 aa29.5■■■□□ 2.31
SF3A1-202ENST00000411423 CEP152O94986 1710 aa29.5■■■□□ 2.31
SF3A1-202ENST00000411423 ANKRD30AQ9BXX3 1397 aa29.5■■■□□ 2.31
SF3A1-202ENST00000411423 ZC3H13Q5T200 1668 aaKnown RBP29.5■■■□□ 2.31
SF3A1-202ENST00000411423 PRDM15P57071 1507 aaPredicted RBP29.48■■■□□ 2.31
SF3A1-202ENST00000411423 TNRQ92752 1358 aa29.47■■■□□ 2.31
SF3A1-202ENST00000411423 DEPDC5O75140 1603 aa29.46■■■□□ 2.31
SF3A1-202ENST00000411423 A2ML1A8K2U0 1454 aa29.44■■■□□ 2.3
SF3A1-202ENST00000411423 SPATA31D1Q6ZQQ2 1576 aa29.4■■■□□ 2.3
SF3A1-202ENST00000411423 PTPRTO14522 1441 aa29.4■■■□□ 2.3
SF3A1-202ENST00000411423 NCKAP5LQ9HCH0 1330 aa29.4■■■□□ 2.3
SF3A1-202ENST00000411423 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.39■■■□□ 2.31e-7■■□□□ 14.5
SF3A1-202ENST00000411423 ERVK-7P63135 1459 aa29.38■■■□□ 2.29
SF3A1-202ENST00000411423 PLA2R1Q13018 1463 aa29.38■■■□□ 2.29
SF3A1-202ENST00000411423 VWDEQ8N2E2 1590 aa29.37■■■□□ 2.29
SF3A1-202ENST00000411423 DMRT2Q9Y5R5 561 aa29.36■■■□□ 2.29
SF3A1-202ENST00000411423 ANKRD50Q9ULJ7 1429 aa29.33■■■□□ 2.29
SF3A1-202ENST00000411423 NLRP1Q9C000 1473 aa29.32■■■□□ 2.28
SF3A1-202ENST00000411423 ARHGAP31Q2M1Z3 1444 aa29.32■■■□□ 2.28
SF3A1-202ENST00000411423 CFAP65Q6ZU64 1925 aaKnown RBP29.32■■■□□ 2.28
SF3A1-202ENST00000411423 LMTK2Q8IWU2 1503 aa29.31■■■□□ 2.28
SF3A1-202ENST00000411423 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.3■■■□□ 2.28
SF3A1-202ENST00000411423 ITGAEP38570 1179 aa29.28■■■□□ 2.28
SF3A1-202ENST00000411423 CERKQ8TCT0 537 aa29.28■■■□□ 2.28
SF3A1-202ENST00000411423 ROCK1Q13464 1354 aa29.27■■■□□ 2.28
SF3A1-202ENST00000411423 UGGT1Q9NYU2 1555 aa29.27■■■□□ 2.28
SF3A1-202ENST00000411423 KANK1Q14678 1352 aa29.26■■■□□ 2.28
SF3A1-202ENST00000411423 PKD2Q13563 968 aa29.26■■■□□ 2.27
SF3A1-202ENST00000411423 FBXO41Q8TF61 875 aa29.26■■■□□ 2.27
SF3A1-202ENST00000411423 RRBP1Q9P2E9 1410 aaKnown RBP29.26■■■□□ 2.27
SF3A1-202ENST00000411423 NEURL4Q96JN8 1562 aa29.26■■■□□ 2.27
SF3A1-202ENST00000411423 LTBP4Q8N2S1 1624 aa29.24■■■□□ 2.27
SF3A1-202ENST00000411423 EFCAB6Q5THR3 1501 aa29.21■■■□□ 2.27
SF3A1-202ENST00000411423 POLR1AO95602 1720 aaPredicted RBP29.21■■■□□ 2.27
SF3A1-202ENST00000411423 UNC13BO14795 1591 aa29.2■■■□□ 2.26
SF3A1-202ENST00000411423 UBR1Q8IWV7 1749 aa29.19■■■□□ 2.26
SF3A1-202ENST00000411423 THEMISQ8N1K5 641 aaPredicted RBP29.18■■■□□ 2.26
SF3A1-202ENST00000411423 SYNMO15061 1565 aa29.18■■■□□ 2.26
SF3A1-202ENST00000411423 ZNF335Q9H4Z2 1342 aaPredicted RBP29.17■■■□□ 2.26
SF3A1-202ENST00000411423 NOS1P29475 1434 aa29.14■■■□□ 2.26
SF3A1-202ENST00000411423 PIK3C2BO00750 1634 aa29.14■■■□□ 2.26
SF3A1-202ENST00000411423 ANKLE2Q86XL3 938 aa29.12■■■□□ 2.25
SF3A1-202ENST00000411423 TET3O43151 1660 aa29.12■■■□□ 2.25
SF3A1-202ENST00000411423 MED14O60244 1454 aa29.1■■■□□ 2.25
SF3A1-202ENST00000411423 IDI1Q13907 227 aa29.08■■■□□ 2.25
SF3A1-202ENST00000411423 NPHP4O75161 1426 aaPredicted RBP29.07■■■□□ 2.24
SF3A1-202ENST00000411423 IQGAP3Q86VI3 1631 aa29.07■■■□□ 2.24
SF3A1-202ENST00000411423 ARHGAP23Q9P227 1491 aa29.07■■■□□ 2.24
SF3A1-202ENST00000411423 GCC2Q8IWJ2 1684 aa29.06■■■□□ 2.24
SF3A1-202ENST00000411423 SLIT1O75093 1534 aa29.05■■■□□ 2.24
SF3A1-202ENST00000411423 RPRD2Q5VT52 1461 aaKnown RBP29.05■■■□□ 2.24
SF3A1-202ENST00000411423 E9PCH4 1651 aa29.05■■■□□ 2.24
SF3A1-202ENST00000411423 LTKP29376 864 aa29.04■■■□□ 2.24
SF3A1-202ENST00000411423 IQGAP1P46940 1657 aa29.03■■■□□ 2.24
SF3A1-202ENST00000411423 NAIPQ13075 1403 aa29.02■■■□□ 2.24
SF3A1-202ENST00000411423 NUP155O75694 1391 aa29.01■■■□□ 2.24
SF3A1-202ENST00000411423 SCAF11Q99590 1463 aaKnown RBP29■■■□□ 2.23
SF3A1-202ENST00000411423 KDM5AP29375 1690 aaKnown RBP28.99■■■□□ 2.23
SF3A1-202ENST00000411423 ADGRB3O60242 1522 aa28.98■■■□□ 2.23
SF3A1-202ENST00000411423 TMEM2Q9UHN6 1383 aa28.98■■■□□ 2.23
SF3A1-202ENST00000411423 IQSEC2Q5JU85 1478 aa28.97■■■□□ 2.23
SF3A1-202ENST00000411423 TXNDC2Q86VQ3 553 aa28.95■■■□□ 2.22
SF3A1-202ENST00000411423 SLC52A1Q9NWF4 448 aa28.94■■■□□ 2.22
SF3A1-202ENST00000411423 STAG3Q9UJ98 1225 aa28.93■■■□□ 2.22
SF3A1-202ENST00000411423 STRCP1A6NGW2 1772 aa28.93■■■□□ 2.22
SF3A1-202ENST00000411423 MYO5BQ9ULV0 1848 aa28.91■■■□□ 2.22
SF3A1-202ENST00000411423 HFM1A2PYH4 1435 aa28.91■■■□□ 2.22
SF3A1-202ENST00000411423 TMEM131LA2VDJ0 1609 aa28.89■■■□□ 2.22
SF3A1-202ENST00000411423 CPS1P31327 1500 aa28.88■■■□□ 2.21
SF3A1-202ENST00000411423 EID1Q9Y6B2 187 aa28.86■■■□□ 2.21
SF3A1-202ENST00000411423 ZFYVE9O95405 1425 aa28.85■■■□□ 2.21
SF3A1-202ENST00000411423 SPHKAPQ2M3C7 1700 aa28.8■■■□□ 2.2
SF3A1-202ENST00000411423 RIMS2Q9UQ26 1411 aa28.78■■■□□ 2.2
SF3A1-202ENST00000411423 LRRC7Q96NW7 1537 aa28.78■■■□□ 2.2
SF3A1-202ENST00000411423 CHGAP10645 457 aaKnown RBP28.77■■■□□ 2.2
SF3A1-202ENST00000411423 SENP3Q9H4L4 574 aaPredicted RBP28.77■■■□□ 2.2
SF3A1-202ENST00000411423 UBAP1LF5GYI3 381 aa28.76■■■□□ 2.19
SF3A1-202ENST00000411423 SLC26A8Q96RN1 970 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms