RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CGNL1Q0VF96 1302 aa15.81■□□□□ 0.12
COL6A3-206ENST00000409809 A0A0G2JS52 829 aa15.8■□□□□ 0.12
COL6A3-206ENST00000409809 REC8O95072 547 aa15.8■□□□□ 0.12
COL6A3-206ENST00000409809 ARHGAP35Q9NRY4 1499 aa15.8■□□□□ 0.12
COL6A3-206ENST00000409809 NASPP49321 788 aaPredicted RBP15.8■□□□□ 0.12
COL6A3-206ENST00000409809 NEXNQ0ZGT2 675 aa15.8■□□□□ 0.12
COL6A3-206ENST00000409809 CHIC2Q9UKJ5 165 aa15.8■□□□□ 0.12
COL6A3-206ENST00000409809 PDE4AP27815 886 aa15.79■□□□□ 0.12
COL6A3-206ENST00000409809 MNS1Q8NEH6 495 aa15.79■□□□□ 0.12
COL6A3-206ENST00000409809 FAM107BQ9H098 131 aa15.78■□□□□ 0.12
COL6A3-206ENST00000409809 NEFHP12036 1026 aa15.78■□□□□ 0.12
COL6A3-206ENST00000409809 KIF7Q2M1P5 1343 aa15.78■□□□□ 0.12
COL6A3-206ENST00000409809 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.12
COL6A3-206ENST00000409809 MFAP1P55081 439 aaKnown RBP15.77■□□□□ 0.12
COL6A3-206ENST00000409809 HIRIP3Q9BW71 556 aaPredicted RBP15.77■□□□□ 0.12
COL6A3-206ENST00000409809 PLEKHD1A6NEE1 506 aa15.76■□□□□ 0.11
COL6A3-206ENST00000409809 MBD3O95983 291 aa15.76■□□□□ 0.11
COL6A3-206ENST00000409809 HOMER1Q86YM7 354 aa15.76■□□□□ 0.11
COL6A3-206ENST00000409809 RNF20Q5VTR2 975 aa15.76■□□□□ 0.11
COL6A3-206ENST00000409809 KIF15Q9NS87 1388 aa15.75■□□□□ 0.11
COL6A3-206ENST00000409809 VPS8Q8N3P4 1428 aa15.75■□□□□ 0.11
COL6A3-206ENST00000409809 CCAR2Q8N163 923 aaKnown RBP15.75■□□□□ 0.11
COL6A3-206ENST00000409809 KIAA0754O94854 1291 aa15.74■□□□□ 0.11
COL6A3-206ENST00000409809 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.11
COL6A3-206ENST00000409809 EIF3JO75822 258 aaKnown RBP15.74■□□□□ 0.11
COL6A3-206ENST00000409809 NLRP13Q86W25 1043 aa15.74■□□□□ 0.11
COL6A3-206ENST00000409809 ITPRIPQ8IWB1 547 aa15.73■□□□□ 0.11
COL6A3-206ENST00000409809 ROCK1Q13464 1354 aa15.73■□□□□ 0.11
COL6A3-206ENST00000409809 CENPJQ9HC77 1338 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-206ENST00000409809 TPD52L1Q16890 204 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-206ENST00000409809 LRRFIP1Q32MZ4 808 aaKnown RBP15.72■□□□□ 0.11
COL6A3-206ENST00000409809 SF3A1Q15459 793 aaKnown RBP15.71■□□□□ 0.11
COL6A3-206ENST00000409809 ARID3CA6NKF2 412 aa15.71■□□□□ 0.11
COL6A3-206ENST00000409809 LMOD3Q0VAK6 560 aa15.71■□□□□ 0.11
COL6A3-206ENST00000409809 DYDC1Q8WWB3 177 aa15.71■□□□□ 0.11
COL6A3-206ENST00000409809 CALCOCO1Q9P1Z2 691 aa15.7■□□□□ 0.1
COL6A3-206ENST00000409809 KANK1Q14678 1352 aa15.7■□□□□ 0.1
COL6A3-206ENST00000409809 IFT57Q9NWB7 429 aa15.7■□□□□ 0.1
COL6A3-206ENST00000409809 CLSTN1O94985 981 aa15.7■□□□□ 0.1
COL6A3-206ENST00000409809 H3BQV1 296 aa15.69■□□□□ 0.1
COL6A3-206ENST00000409809 IFFO2Q5TF58 517 aa15.69■□□□□ 0.1
COL6A3-206ENST00000409809 TXLNBQ8N3L3 684 aa15.69■□□□□ 0.1
COL6A3-206ENST00000409809 ZNF592Q92610 1267 aa15.69■□□□□ 0.1
COL6A3-206ENST00000409809 RRP7BPQ9NSQ0 103 aa15.68■□□□□ 0.1
COL6A3-206ENST00000409809 NEUROD2Q15784 382 aa15.68■□□□□ 0.1
COL6A3-206ENST00000409809 ERLIN1O75477 346 aa15.68■□□□□ 0.1
COL6A3-206ENST00000409809 DDX11Q96FC9 970 aa15.68■□□□□ 0.1
COL6A3-206ENST00000409809 KIF2AO00139 706 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-206ENST00000409809 PDIA4P13667 645 aaKnown RBP15.68■□□□□ 0.1
COL6A3-206ENST00000409809 IQCEQ6IPM2 695 aa15.67■□□□□ 0.1
COL6A3-206ENST00000409809 PDCL3Q9H2J4 239 aa15.67■□□□□ 0.1
COL6A3-206ENST00000409809 ANKRD30AQ9BXX3 1397 aa15.66■□□□□ 0.1
COL6A3-206ENST00000409809 PPP1R15AO75807 674 aaPredicted RBP15.66■□□□□ 0.1
COL6A3-206ENST00000409809 SPAG9O60271 1321 aaKnown RBP15.66■□□□□ 0.1
COL6A3-206ENST00000409809 ZBTB7CA1YPR0 619 aa15.66■□□□□ 0.1
COL6A3-206ENST00000409809 RASSF8Q8NHQ8 419 aa15.65■□□□□ 0.1
COL6A3-206ENST00000409809 GOLGA6L10A6NI86 522 aa15.65■□□□□ 0.1
COL6A3-206ENST00000409809 NFKBIBQ15653 356 aa15.65■□□□□ 0.1
COL6A3-206ENST00000409809 CCDC47Q96A33 483 aaKnown RBP15.65■□□□□ 0.1
COL6A3-206ENST00000409809 CC2D1BQ5T0F9 858 aaKnown RBP15.65■□□□□ 0.1
COL6A3-206ENST00000409809 SASS6Q6UVJ0 657 aa15.64■□□□□ 0.09
COL6A3-206ENST00000409809 RTF1Q92541 710 aaKnown RBP15.64■□□□□ 0.09
COL6A3-206ENST00000409809 RABEP1Q15276 862 aa15.64■□□□□ 0.09
COL6A3-206ENST00000409809 MORC1Q86VD1 984 aa15.64■□□□□ 0.09
COL6A3-206ENST00000409809 RUFY2Q8WXA3 655 aa15.64■□□□□ 0.09
COL6A3-206ENST00000409809 TULP1O00294 542 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-206ENST00000409809 MCM2P49736 904 aa15.63■□□□□ 0.09
COL6A3-206ENST00000409809 RRP1P56182 461 aaKnown RBP15.63■□□□□ 0.09
COL6A3-206ENST00000409809 FAM184AQ8NB25 1140 aa15.63■□□□□ 0.09
COL6A3-206ENST00000409809 ERCC6Q03468 1493 aa15.63■□□□□ 0.09
COL6A3-206ENST00000409809 U2SURPO15042 1029 aaKnown RBP15.62■□□□□ 0.09
COL6A3-206ENST00000409809 PLEKHG5O94827 1062 aa15.62■□□□□ 0.09
COL6A3-206ENST00000409809 CPLX2Q6PUV4 134 aaKnown RBP15.62■□□□□ 0.09
COL6A3-206ENST00000409809 R3HCC1Q9Y3T6 440 aaKnown RBP15.62■□□□□ 0.09
COL6A3-206ENST00000409809 FMN1Q68DA7 1419 aa15.62■□□□□ 0.09
COL6A3-206ENST00000409809 MYBBP1AQ9BQG0 1328 aaKnown RBP15.62■□□□□ 0.09
COL6A3-206ENST00000409809 TRIM6-TRIM34B2RNG4 842 aa15.62■□□□□ 0.09
COL6A3-206ENST00000409809 NINLQ9Y2I6 1382 aa15.62■□□□□ 0.09
COL6A3-206ENST00000409809 GIMAP7Q8NHV1 300 aa15.61■□□□□ 0.09
COL6A3-206ENST00000409809 HDGFP51858 240 aaKnown RBP15.61■□□□□ 0.09
COL6A3-206ENST00000409809 STK31Q9BXU1 1019 aa15.61■□□□□ 0.09
COL6A3-206ENST00000409809 SMC4Q9NTJ3 1288 aa15.61■□□□□ 0.09
COL6A3-206ENST00000409809 HMGB1P09429 215 aaKnown RBP15.6■□□□□ 0.09
COL6A3-206ENST00000409809 E9PSI1 815 aa15.6■□□□□ 0.09
COL6A3-206ENST00000409809 POLR3GO15318 223 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-206ENST00000409809 ZKSCAN1P17029 563 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-206ENST00000409809 CFDP1Q9UEE9 299 aaPredicted RBP15.59■□□□□ 0.09
COL6A3-206ENST00000409809 PATL2C9JE40 543 aaKnown RBP15.59■□□□□ 0.09
COL6A3-206ENST00000409809 ERLIN2O94905 339 aa15.59■□□□□ 0.09
COL6A3-206ENST00000409809 PIP4K2AP48426 406 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-206ENST00000409809 PDCP20941 246 aa15.58■□□□□ 0.08
COL6A3-206ENST00000409809 CTR9Q6PD62 1173 aa15.58■□□□□ 0.08
COL6A3-206ENST00000409809 MCM3P25205 808 aa15.58■□□□□ 0.08
COL6A3-206ENST00000409809 HSP90AB3PQ58FF7 597 aa15.57■□□□□ 0.08
COL6A3-206ENST00000409809 CCDC73Q6ZRK6 1079 aa15.57■□□□□ 0.08
COL6A3-206ENST00000409809 LUC7LQ9NQ29 371 aaKnown RBP15.57■□□□□ 0.08
COL6A3-206ENST00000409809 MCM5P33992 734 aa15.56■□□□□ 0.08
COL6A3-206ENST00000409809 DDX19BQ9UMR2 479 aa15.56■□□□□ 0.08
COL6A3-206ENST00000409809 CCDC112Q8NEF3 446 aa15.56■□□□□ 0.08
COL6A3-206ENST00000409809 SMARCE1Q969G3 411 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms