RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CLTCQ00610 1675 aaKnown RBP21.07■□□□□ 0.96
VCX3A-202ENST00000398729 TCOF1Q13428 1488 aaKnown RBP21.07■□□□□ 0.96
VCX3A-202ENST00000398729 PLA2R1Q13018 1463 aa21.06■□□□□ 0.96
VCX3A-202ENST00000398729 ARHGEF5Q12774 1597 aa21.06■□□□□ 0.96
VCX3A-202ENST00000398729 MYOM3Q5VTT5 1437 aa21.04■□□□□ 0.96
VCX3A-202ENST00000398729 TSPY4P0CV99 314 aa21.03■□□□□ 0.96
VCX3A-202ENST00000398729 TSPY10P0CW01 314 aa21.03■□□□□ 0.96
VCX3A-202ENST00000398729 MIA2Q96PC5 1412 aa21.03■□□□□ 0.96
VCX3A-202ENST00000398729 DHX29Q7Z478 1369 aaKnown RBP21.02■□□□□ 0.96
VCX3A-202ENST00000398729 CEP170BQ9Y4F5 1589 aaPredicted RBP21.02■□□□□ 0.95
VCX3A-202ENST00000398729 MYO3AQ8NEV4 1616 aa21.01■□□□□ 0.95
VCX3A-202ENST00000398729 FBXO31Q5XUX0 539 aaPredicted RBP21.01■□□□□ 0.95
VCX3A-202ENST00000398729 ZNF142P52746 1687 aaPredicted RBP21.01■□□□□ 0.95
VCX3A-202ENST00000398729 A2ML1A8K2U0 1454 aa20.96■□□□□ 0.95
VCX3A-202ENST00000398729 KIF3BO15066 747 aa20.95■□□□□ 0.94
VCX3A-202ENST00000398729 DNMT1P26358 1616 aaKnown RBP20.95■□□□□ 0.94
VCX3A-202ENST00000398729 MAST1Q9Y2H9 1570 aa20.94■□□□□ 0.94
VCX3A-202ENST00000398729 HSPA1LP34931 641 aa20.94■□□□□ 0.94
VCX3A-202ENST00000398729 PIP4K2BP78356 416 aa20.91■□□□□ 0.94
VCX3A-202ENST00000398729 PTPN23Q9H3S7 1636 aa20.9■□□□□ 0.94
VCX3A-202ENST00000398729 TNRQ92752 1358 aa20.9■□□□□ 0.94
VCX3A-202ENST00000398729 FAM135AQ9P2D6 1515 aa20.88■□□□□ 0.93
VCX3A-202ENST00000398729 TOM1O60784 492 aa20.88■□□□□ 0.93
VCX3A-202ENST00000398729 FGD6Q6ZV73 1430 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 SCAF1Q9H7N4 1312 aaKnown RBP20.87■□□□□ 0.93
VCX3A-202ENST00000398729 WASHC2CQ9Y4E1 1318 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 ANKLE2Q86XL3 938 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 NEURL4Q96JN8 1562 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 KDM5DQ9BY66 1539 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 SHANK2Q9UPX8 1470 aa20.87■□□□□ 0.93
VCX3A-202ENST00000398729 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.86■□□□□ 0.93
VCX3A-202ENST00000398729 THEMISQ8N1K5 641 aaPredicted RBP20.85■□□□□ 0.93
VCX3A-202ENST00000398729 PZPP20742 1482 aa20.84■□□□□ 0.93
VCX3A-202ENST00000398729 ABCC5O15440 1437 aa20.84■□□□□ 0.93
VCX3A-202ENST00000398729 CROCC2H7BZ55 1655 aa20.83■□□□□ 0.93
VCX3A-202ENST00000398729 EIF2AK4Q9P2K8 1649 aaKnown RBP20.83■□□□□ 0.93
VCX3A-202ENST00000398729 CPS1P31327 1500 aa20.83■□□□□ 0.92
VCX3A-202ENST00000398729 DUOX2Q9NRD8 1548 aa20.82■□□□□ 0.92
VCX3A-202ENST00000398729 RNF17Q9BXT8 1623 aaKnown RBP20.82■□□□□ 0.92
VCX3A-202ENST00000398729 DAPK1P53355 1430 aa20.81■□□□□ 0.92
VCX3A-202ENST00000398729 VWDEQ8N2E2 1590 aa20.8■□□□□ 0.92
VCX3A-202ENST00000398729 KIF15Q9NS87 1388 aa20.79■□□□□ 0.92
VCX3A-202ENST00000398729 POLR1AO95602 1720 aaPredicted RBP20.78■□□□□ 0.92
VCX3A-202ENST00000398729 MED14O60244 1454 aa20.78■□□□□ 0.92
VCX3A-202ENST00000398729 ALKQ9UM73 1620 aa20.78■□□□□ 0.92
VCX3A-202ENST00000398729 MED1Q15648 1581 aaPredicted RBP20.77■□□□□ 0.92
VCX3A-202ENST00000398729 RRP7BPQ9NSQ0 103 aa20.77■□□□□ 0.92
VCX3A-202ENST00000398729 NPHP4O75161 1426 aaPredicted RBP20.77■□□□□ 0.91
VCX3A-202ENST00000398729 ZC3H13Q5T200 1668 aaKnown RBP20.77■□□□□ 0.91
VCX3A-202ENST00000398729 NLRP1Q9C000 1473 aa20.75■□□□□ 0.91
VCX3A-202ENST00000398729 ERBINQ96RT1 1412 aa20.75■□□□□ 0.91
VCX3A-202ENST00000398729 UGGT1Q9NYU2 1555 aa20.75■□□□□ 0.91
VCX3A-202ENST00000398729 ABCC3O15438 1527 aa20.74■□□□□ 0.91
VCX3A-202ENST00000398729 ANKRD30AQ9BXX3 1397 aa20.73■□□□□ 0.91
VCX3A-202ENST00000398729 FAM50AQ14320 339 aaKnown RBP20.73■□□□□ 0.91
VCX3A-202ENST00000398729 MROH1Q8NDA8 1641 aa20.73■□□□□ 0.91
VCX3A-202ENST00000398729 CHIC2Q9UKJ5 165 aa20.72■□□□□ 0.91
VCX3A-202ENST00000398729 DEPDC5O75140 1603 aa20.71■□□□□ 0.91
VCX3A-202ENST00000398729 CEP152O94986 1710 aa20.7■□□□□ 0.9
VCX3A-202ENST00000398729 STRCP1A6NGW2 1772 aa20.69■□□□□ 0.9
VCX3A-202ENST00000398729 PRDM15P57071 1507 aaPredicted RBP20.68■□□□□ 0.9
VCX3A-202ENST00000398729 LRRC7Q96NW7 1537 aa20.68■□□□□ 0.9
VCX3A-202ENST00000398729 SENP3Q9H4L4 574 aaPredicted RBP20.68■□□□□ 0.9
VCX3A-202ENST00000398729 ADGRL2O95490 1459 aa20.66■□□□□ 0.9
VCX3A-202ENST00000398729 KANK1Q14678 1352 aa20.65■□□□□ 0.9
VCX3A-202ENST00000398729 LTKP29376 864 aa20.65■□□□□ 0.9
VCX3A-202ENST00000398729 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.65■□□□□ 0.9
VCX3A-202ENST00000398729 PHF23Q9BUL5 403 aaPredicted RBP20.65■□□□□ 0.9
VCX3A-202ENST00000398729 IQGAP1P46940 1657 aa20.64■□□□□ 0.9
VCX3A-202ENST00000398729 ERVK-7P63135 1459 aa20.64■□□□□ 0.89
VCX3A-202ENST00000398729 RGS17Q9UGC6 210 aaPredicted RBP20.62■□□□□ 0.89
VCX3A-202ENST00000398729 ARHGAP31Q2M1Z3 1444 aa20.61■□□□□ 0.89
VCX3A-202ENST00000398729 CFAP65Q6ZU64 1925 aaKnown RBP20.61■□□□□ 0.89
VCX3A-202ENST00000398729 TXNDC2Q86VQ3 553 aa20.59■□□□□ 0.89
VCX3A-202ENST00000398729 PPARGC1BQ86YN6 1023 aaKnown RBP20.59■□□□□ 0.89
VCX3A-202ENST00000398729 ANKRD50Q9ULJ7 1429 aa20.58■□□□□ 0.88
VCX3A-202ENST00000398729 LMTK2Q8IWU2 1503 aa20.57■□□□□ 0.88
VCX3A-202ENST00000398729 UBR1Q8IWV7 1749 aa20.55■□□□□ 0.88
VCX3A-202ENST00000398729 SCAF11Q99590 1463 aaKnown RBP20.55■□□□□ 0.88
VCX3A-202ENST00000398729 ARHGAP23Q9P227 1491 aa20.55■□□□□ 0.88
VCX3A-202ENST00000398729 ROCK1Q13464 1354 aa20.52■□□□□ 0.88
VCX3A-202ENST00000398729 SLIT1O75093 1534 aa20.52■□□□□ 0.87
VCX3A-202ENST00000398729 SYNMO15061 1565 aa20.51■□□□□ 0.87
VCX3A-202ENST00000398729 EFCAB6Q5THR3 1501 aa20.5■□□□□ 0.87
VCX3A-202ENST00000398729 EID1Q9Y6B2 187 aa20.5■□□□□ 0.87
VCX3A-202ENST00000398729 XIRP1Q702N8 1843 aaKnown RBP20.5■□□□□ 0.87
VCX3A-202ENST00000398729 ITGAEP38570 1179 aa20.49■□□□□ 0.87
VCX3A-202ENST00000398729 TMEM2Q9UHN6 1383 aa20.47■□□□□ 0.87
VCX3A-202ENST00000398729 FAM135BQ49AJ0 1406 aa20.47■□□□□ 0.87
VCX3A-202ENST00000398729 IDI1Q13907 227 aa20.47■□□□□ 0.87
VCX3A-202ENST00000398729 STAG3Q9UJ98 1225 aa20.46■□□□□ 0.87
VCX3A-202ENST00000398729 UNC13BO14795 1591 aa20.46■□□□□ 0.87
VCX3A-202ENST00000398729 PIK3C2BO00750 1634 aa20.45■□□□□ 0.87
VCX3A-202ENST00000398729 RPRD2Q5VT52 1461 aaKnown RBP20.45■□□□□ 0.86
VCX3A-202ENST00000398729 POTEAQ6S8J7 498 aa20.45■□□□□ 0.86
VCX3A-202ENST00000398729 NOS1P29475 1434 aa20.44■□□□□ 0.86
VCX3A-202ENST00000398729 KCNA6P17658 529 aa20.44■□□□□ 0.86
VCX3A-202ENST00000398729 RBM33Q96EV2 1170 aaKnown RBP20.44■□□□□ 0.86
VCX3A-202ENST00000398729 TET3O43151 1660 aa20.44■□□□□ 0.86
VCX3A-202ENST00000398729 TMEM94Q12767 1356 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms