RNA–Protein interactions for RNA: ENST00000397428.7

SYNE4-203, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 382 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-203ENST00000397428 TSPY4P0CV99 314 aa19.05■□□□□ 0.64
SYNE4-203ENST00000397428 TSPY10P0CW01 314 aa19.05■□□□□ 0.64
SYNE4-203ENST00000397428 WASHC2CQ9Y4E1 1318 aa19.04■□□□□ 0.64
SYNE4-203ENST00000397428 CAMSAP2Q08AD1 1489 aa19.04■□□□□ 0.64
SYNE4-203ENST00000397428 DNMT1P26358 1616 aaKnown RBP19.04■□□□□ 0.64
SYNE4-203ENST00000397428 TNRQ92752 1358 aa19.02■□□□□ 0.64
SYNE4-203ENST00000397428 FAM135AQ9P2D6 1515 aa19.01■□□□□ 0.63
SYNE4-203ENST00000397428 UBAP1LF5GYI3 381 aa19.01■□□□□ 0.63
SYNE4-203ENST00000397428 PZPP20742 1482 aa19.01■□□□□ 0.63
SYNE4-203ENST00000397428 ARHGEF5Q12774 1597 aa19.01■□□□□ 0.63
SYNE4-203ENST00000397428 LOC105371045A0A1W2PR82 267 aa19■□□□□ 0.63
SYNE4-203ENST00000397428 MIA2Q96PC5 1412 aa19■□□□□ 0.63
SYNE4-203ENST00000397428 THEMISQ8N1K5 641 aaPredicted RBP18.99■□□□□ 0.63
SYNE4-203ENST00000397428 KDM5DQ9BY66 1539 aa18.99■□□□□ 0.63
SYNE4-203ENST00000397428 LRRC9Q6ZRR7 1453 aa18.98■□□□□ 0.63
SYNE4-203ENST00000397428 SOCS7O14512 581 aa18.98■□□□□ 0.63
SYNE4-203ENST00000397428 ANKLE2Q86XL3 938 aa18.97■□□□□ 0.63
SYNE4-203ENST00000397428 KANK4Q5T7N3 995 aaPredicted RBP18.96■□□□□ 0.63
SYNE4-203ENST00000397428 VPS8Q8N3P4 1428 aa18.96■□□□□ 0.63
SYNE4-203ENST00000397428 NLRP1Q9C000 1473 aa18.94■□□□□ 0.62
SYNE4-203ENST00000397428 MAP3K1Q13233 1512 aa18.94■□□□□ 0.62
SYNE4-203ENST00000397428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.93■□□□□ 0.62
SYNE4-203ENST00000397428 NEURL4Q96JN8 1562 aa18.93■□□□□ 0.62
SYNE4-203ENST00000397428 MAST1Q9Y2H9 1570 aa18.92■□□□□ 0.62
SYNE4-203ENST00000397428 SHANK2Q9UPX8 1470 aa18.91■□□□□ 0.62
SYNE4-203ENST00000397428 SPATA31D1Q6ZQQ2 1576 aa18.91■□□□□ 0.62
SYNE4-203ENST00000397428 POLR1AO95602 1720 aaPredicted RBP18.91■□□□□ 0.62
SYNE4-203ENST00000397428 MED14O60244 1454 aa18.9■□□□□ 0.62
SYNE4-203ENST00000397428 CPS1P31327 1500 aa18.9■□□□□ 0.62
SYNE4-203ENST00000397428 TOM1O60784 492 aa18.89■□□□□ 0.61
SYNE4-203ENST00000397428 UGGT1Q9NYU2 1555 aa18.89■□□□□ 0.61
SYNE4-203ENST00000397428 RNF17Q9BXT8 1623 aaKnown RBP18.89■□□□□ 0.61
SYNE4-203ENST00000397428 ABCC3O15438 1527 aa18.87■□□□□ 0.61
SYNE4-203ENST00000397428 DEPDC5O75140 1603 aa18.87■□□□□ 0.61
SYNE4-203ENST00000397428 MYOM3Q5VTT5 1437 aa18.87■□□□□ 0.61
SYNE4-203ENST00000397428 NPHP4O75161 1426 aaPredicted RBP18.86■□□□□ 0.61
SYNE4-203ENST00000397428 VWDEQ8N2E2 1590 aa18.85■□□□□ 0.61
SYNE4-203ENST00000397428 EIF2AK4Q9P2K8 1649 aaKnown RBP18.85■□□□□ 0.61
SYNE4-203ENST00000397428 HSPA1LP34931 641 aa18.84■□□□□ 0.61
SYNE4-203ENST00000397428 ZC3H13Q5T200 1668 aaKnown RBP18.83■□□□□ 0.61
SYNE4-203ENST00000397428 MROH1Q8NDA8 1641 aa18.83■□□□□ 0.61
SYNE4-203ENST00000397428 PIP4K2BP78356 416 aa18.82■□□□□ 0.6
SYNE4-203ENST00000397428 ERVK-7P63135 1459 aa18.82■□□□□ 0.6
SYNE4-203ENST00000397428 DUOX2Q9NRD8 1548 aa18.81■□□□□ 0.6
SYNE4-203ENST00000397428 RRP7BPQ9NSQ0 103 aa18.79■□□□□ 0.6
SYNE4-203ENST00000397428 ABCC5O15440 1437 aa18.79■□□□□ 0.6
SYNE4-203ENST00000397428 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
SYNE4-203ENST00000397428 ARHGAP31Q2M1Z3 1444 aa18.78■□□□□ 0.6
SYNE4-203ENST00000397428 IQGAP1P46940 1657 aa18.78■□□□□ 0.6
SYNE4-203ENST00000397428 LTKP29376 864 aa18.77■□□□□ 0.6
SYNE4-203ENST00000397428 ALKQ9UM73 1620 aa18.76■□□□□ 0.59
SYNE4-203ENST00000397428 KIF15Q9NS87 1388 aa18.76■□□□□ 0.59
SYNE4-203ENST00000397428 CFAP65Q6ZU64 1925 aaKnown RBP18.76■□□□□ 0.59
SYNE4-203ENST00000397428 CEP152O94986 1710 aa18.75■□□□□ 0.59
SYNE4-203ENST00000397428 TXNDC2Q86VQ3 553 aa18.75■□□□□ 0.59
SYNE4-203ENST00000397428 STRCP1A6NGW2 1772 aa18.75■□□□□ 0.59
SYNE4-203ENST00000397428 LRRC7Q96NW7 1537 aa18.74■□□□□ 0.59
SYNE4-203ENST00000397428 UBR1Q8IWV7 1749 aa18.74■□□□□ 0.59
SYNE4-203ENST00000397428 APLP2Q06481 763 aa18.74■□□□□ 0.59
SYNE4-203ENST00000397428 ERBINQ96RT1 1412 aa18.74■□□□□ 0.59
SYNE4-203ENST00000397428 ARHGAP23Q9P227 1491 aa18.73■□□□□ 0.59
SYNE4-203ENST00000397428 PTPN23Q9H3S7 1636 aa18.72■□□□□ 0.59
SYNE4-203ENST00000397428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
SYNE4-203ENST00000397428 SLIT1O75093 1534 aa18.72■□□□□ 0.59
SYNE4-203ENST00000397428 SCAF11Q99590 1463 aaKnown RBP18.71■□□□□ 0.59
SYNE4-203ENST00000397428 PRDM15P57071 1507 aaPredicted RBP18.71■□□□□ 0.59
SYNE4-203ENST00000397428 DAPK1P53355 1430 aa18.71■□□□□ 0.59
SYNE4-203ENST00000397428 CROCC2H7BZ55 1655 aa18.69■□□□□ 0.58
SYNE4-203ENST00000397428 EID1Q9Y6B2 187 aa18.69■□□□□ 0.58
SYNE4-203ENST00000397428 FGD6Q6ZV73 1430 aa18.68■□□□□ 0.58
SYNE4-203ENST00000397428 IDI1Q13907 227 aa18.68■□□□□ 0.58
SYNE4-203ENST00000397428 KANK1Q14678 1352 aa18.68■□□□□ 0.58
SYNE4-203ENST00000397428 CHIC2Q9UKJ5 165 aa18.67■□□□□ 0.58
SYNE4-203ENST00000397428 MED1Q15648 1581 aaPredicted RBP18.67■□□□□ 0.58
SYNE4-203ENST00000397428 ANKRD30AQ9BXX3 1397 aa18.67■□□□□ 0.58
SYNE4-203ENST00000397428 TMEM2Q9UHN6 1383 aa18.67■□□□□ 0.58
SYNE4-203ENST00000397428 LMTK2Q8IWU2 1503 aa18.64■□□□□ 0.58
SYNE4-203ENST00000397428 SYNMO15061 1565 aa18.64■□□□□ 0.58
SYNE4-203ENST00000397428 PIK3C2BO00750 1634 aa18.63■□□□□ 0.57
SYNE4-203ENST00000397428 STAG3Q9UJ98 1225 aa18.63■□□□□ 0.57
SYNE4-203ENST00000397428 KDM5AP29375 1690 aaKnown RBP18.62■□□□□ 0.57
SYNE4-203ENST00000397428 NOS1P29475 1434 aa18.6■□□□□ 0.57
SYNE4-203ENST00000397428 KCNA6P17658 529 aa18.6■□□□□ 0.57
SYNE4-203ENST00000397428 SLC52A1Q9NWF4 448 aa18.6■□□□□ 0.57
SYNE4-203ENST00000397428 XIRP1Q702N8 1843 aaKnown RBP18.59■□□□□ 0.57
SYNE4-203ENST00000397428 TET3O43151 1660 aa18.59■□□□□ 0.57
SYNE4-203ENST00000397428 EFCAB6Q5THR3 1501 aa18.59■□□□□ 0.57
SYNE4-203ENST00000397428 ADGRL2O95490 1459 aa18.58■□□□□ 0.56
SYNE4-203ENST00000397428 SLC26A8Q96RN1 970 aa18.56■□□□□ 0.56
SYNE4-203ENST00000397428 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
SYNE4-203ENST00000397428 FAM135BQ49AJ0 1406 aa18.56■□□□□ 0.56
SYNE4-203ENST00000397428 PHF23Q9BUL5 403 aaPredicted RBP18.55■□□□□ 0.56
SYNE4-203ENST00000397428 PROSER2Q86WR7 435 aaPredicted RBP18.54■□□□□ 0.56
SYNE4-203ENST00000397428 TMEM94Q12767 1356 aa18.54■□□□□ 0.56
SYNE4-203ENST00000397428 FAM50AQ14320 339 aaKnown RBP18.53■□□□□ 0.56
SYNE4-203ENST00000397428 ANKRD50Q9ULJ7 1429 aa18.52■□□□□ 0.56
SYNE4-203ENST00000397428 RGS17Q9UGC6 210 aaPredicted RBP18.52■□□□□ 0.56
SYNE4-203ENST00000397428 RPRD2Q5VT52 1461 aaKnown RBP18.52■□□□□ 0.55
SYNE4-203ENST00000397428 ADGRB3O60242 1522 aa18.49■□□□□ 0.55
SYNE4-203ENST00000397428 HDGFP51858 240 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms