RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 TNRQ92752 1358 aa15.62■□□□□ 0.09
NEDD9-203ENST00000397378 INO80Q9ULG1 1556 aaPredicted RBP15.62■□□□□ 0.09
NEDD9-203ENST00000397378 IQGAP1P46940 1657 aa15.62■□□□□ 0.09
NEDD9-203ENST00000397378 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
NEDD9-203ENST00000397378 DEPDC5O75140 1603 aa15.61■□□□□ 0.09
NEDD9-203ENST00000397378 HNRNPMP52272 730 aaKnown RBP eCLIP15.6■□□□□ 0.09
NEDD9-203ENST00000397378 MED14O60244 1454 aa15.59■□□□□ 0.09
NEDD9-203ENST00000397378 FBXO31Q5XUX0 539 aaPredicted RBP15.59■□□□□ 0.09
NEDD9-203ENST00000397378 THEMISQ8N1K5 641 aaPredicted RBP15.59■□□□□ 0.09
NEDD9-203ENST00000397378 ADGBQ8N7X0 1667 aa15.58■□□□□ 0.08
NEDD9-203ENST00000397378 UGGT1Q9NYU2 1555 aa15.58■□□□□ 0.08
NEDD9-203ENST00000397378 FAM135AQ9P2D6 1515 aa15.57■□□□□ 0.08
NEDD9-203ENST00000397378 CCDC18Q5T9S5 1454 aa15.55■□□□□ 0.08
NEDD9-203ENST00000397378 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
NEDD9-203ENST00000397378 PZPP20742 1482 aa15.54■□□□□ 0.08
NEDD9-203ENST00000397378 NLRP1Q9C000 1473 aa15.53■□□□□ 0.08
NEDD9-203ENST00000397378 CASKIN1Q8WXD9 1431 aa15.52■□□□□ 0.08
NEDD9-203ENST00000397378 KDM5DQ9BY66 1539 aa15.52■□□□□ 0.07
NEDD9-203ENST00000397378 PLEKHH2Q8IVE3 1493 aa15.52■□□□□ 0.07
NEDD9-203ENST00000397378 XIRP1Q702N8 1843 aaKnown RBP15.5■□□□□ 0.07
NEDD9-203ENST00000397378 GPATCH8Q9UKJ3 1502 aaKnown RBP15.5■□□□□ 0.07
NEDD9-203ENST00000397378 UPF1Q92900 1129 aaKnown RBP eCLIP15.5■□□□□ 0.07
NEDD9-203ENST00000397378 MIA2Q96PC5 1412 aa15.5■□□□□ 0.07
NEDD9-203ENST00000397378 KIAA1107Q9UPP5 1409 aa15.5■□□□□ 0.07
NEDD9-203ENST00000397378 ZC3H13Q5T200 1668 aaKnown RBP15.49■□□□□ 0.07
NEDD9-203ENST00000397378 FAM135BQ49AJ0 1406 aa15.48■□□□□ 0.07
NEDD9-203ENST00000397378 WASHC2CQ9Y4E1 1318 aa15.47■□□□□ 0.07
NEDD9-203ENST00000397378 CFDP1Q9UEE9 299 aaPredicted RBP15.47■□□□□ 0.07
NEDD9-203ENST00000397378 ROBO1Q9Y6N7 1651 aa15.47■□□□□ 0.07
NEDD9-203ENST00000397378 KIF3BO15066 747 aa15.46■□□□□ 0.07
NEDD9-203ENST00000397378 FYCO1Q9BQS8 1478 aa15.46■□□□□ 0.06
NEDD9-203ENST00000397378 TRIM52Q96A61 297 aa15.44■□□□□ 0.06
NEDD9-203ENST00000397378 DHX29Q7Z478 1369 aaKnown RBP15.44■□□□□ 0.06
NEDD9-203ENST00000397378 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
NEDD9-203ENST00000397378 SCAF11Q99590 1463 aaKnown RBP15.41■□□□□ 0.06
NEDD9-203ENST00000397378 CCNB3Q8WWL7 1395 aa15.41■□□□□ 0.06
NEDD9-203ENST00000397378 PHLPP1O60346 1717 aa15.4■□□□□ 0.06
NEDD9-203ENST00000397378 RTEL1-TNFRSF6BF6WH68 1400 aa15.39■□□□□ 0.05
NEDD9-203ENST00000397378 UBR1Q8IWV7 1749 aa15.38■□□□□ 0.05
NEDD9-203ENST00000397378 JCADQ9P266 1359 aa15.37■□□□□ 0.05
NEDD9-203ENST00000397378 ZNF644Q9H582 1327 aaPredicted RBP15.37■□□□□ 0.05
NEDD9-203ENST00000397378 TMEM94Q12767 1356 aa15.36■□□□□ 0.05
NEDD9-203ENST00000397378 SRCAPQ6ZRS2 3230 aa15.36■□□□□ 0.05
NEDD9-203ENST00000397378 LRRC9Q6ZRR7 1453 aa15.36■□□□□ 0.05
NEDD9-203ENST00000397378 MEX3CQ5U5Q3 659 aaKnown RBP15.36■□□□□ 0.05
NEDD9-203ENST00000397378 ZNF772Q68DY9 489 aaPredicted RBP15.36■□□□□ 0.05
NEDD9-203ENST00000397378 MBD5Q9P267 1494 aa15.35■□□□□ 0.05
NEDD9-203ENST00000397378 TXNDC2Q86VQ3 553 aa15.35■□□□□ 0.05
NEDD9-203ENST00000397378 ERVK-7P63135 1459 aa15.33■□□□□ 0.05
NEDD9-203ENST00000397378 LTKP29376 864 aa15.33■□□□□ 0.04
NEDD9-203ENST00000397378 MAP3K1Q13233 1512 aa15.33■□□□□ 0.04
NEDD9-203ENST00000397378 LRP6O75581 1613 aa15.32■□□□□ 0.04
NEDD9-203ENST00000397378 RBM33Q96EV2 1170 aaKnown RBP15.32■□□□□ 0.04
NEDD9-203ENST00000397378 CFAP65Q6ZU64 1925 aaKnown RBP15.31■□□□□ 0.04
NEDD9-203ENST00000397378 RXRBP28702 533 aa15.31■□□□□ 0.04
NEDD9-203ENST00000397378 EID1Q9Y6B2 187 aa15.31■□□□□ 0.04
NEDD9-203ENST00000397378 ABCC3O15438 1527 aa15.3■□□□□ 0.04
NEDD9-203ENST00000397378 SLIT1O75093 1534 aa15.3■□□□□ 0.04
NEDD9-203ENST00000397378 TIAM1Q13009 1591 aa15.3■□□□□ 0.04
NEDD9-203ENST00000397378 NCOA2Q15596 1464 aa15.3■□□□□ 0.04
NEDD9-203ENST00000397378 PROSER2Q86WR7 435 aaPredicted RBP15.3■□□□□ 0.04
NEDD9-203ENST00000397378 ARHGAP23Q9P227 1491 aa15.3■□□□□ 0.04
NEDD9-203ENST00000397378 COL16A1Q07092 1604 aaPredicted RBP15.29■□□□□ 0.04
NEDD9-203ENST00000397378 CCDC141Q6ZP82 1450 aa15.29■□□□□ 0.04
NEDD9-203ENST00000397378 MTUS2Q5JR59 1369 aa15.29■□□□□ 0.04
NEDD9-203ENST00000397378 SPATA31A6Q5VVP1 1343 aa15.28■□□□□ 0.04
NEDD9-203ENST00000397378 MSH6P52701 1360 aa15.27■□□□□ 0.04
NEDD9-203ENST00000397378 CDK12Q9NYV4 1490 aaPredicted RBP15.27■□□□□ 0.03
NEDD9-203ENST00000397378 CEP152O94986 1710 aa15.26■□□□□ 0.03
NEDD9-203ENST00000397378 KCNA6P17658 529 aa15.26■□□□□ 0.03
NEDD9-203ENST00000397378 SLAIN2Q9P270 581 aa15.26■□□□□ 0.03
NEDD9-203ENST00000397378 PRDM15P57071 1507 aaPredicted RBP15.26■□□□□ 0.03
NEDD9-203ENST00000397378 EHBP1L1Q8N3D4 1523 aa15.26■□□□□ 0.03
NEDD9-203ENST00000397378 FGD6Q6ZV73 1430 aa15.24■□□□□ 0.03
NEDD9-203ENST00000397378 NKTRP30414 1462 aaKnown RBP15.23■□□□□ 0.03
NEDD9-203ENST00000397378 CEP162Q5TB80 1403 aa15.23■□□□□ 0.03
NEDD9-203ENST00000397378 SHPRHQ149N8 1683 aa15.22■□□□□ 0.03
NEDD9-203ENST00000397378 SLC26A8Q96RN1 970 aa15.22■□□□□ 0.03
NEDD9-203ENST00000397378 STAG3Q9UJ98 1225 aa15.22■□□□□ 0.03
NEDD9-203ENST00000397378 PIK3C2BO00750 1634 aa15.21■□□□□ 0.03
NEDD9-203ENST00000397378 CAMSAP2Q08AD1 1489 aa15.21■□□□□ 0.03
NEDD9-203ENST00000397378 TMEM2Q9UHN6 1383 aa15.21■□□□□ 0.02
NEDD9-203ENST00000397378 NWD1Q149M9 1564 aa15.2■□□□□ 0.02
NEDD9-203ENST00000397378 EIF2AK4Q9P2K8 1649 aaKnown RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 NUTM2BA6NNL0 878 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 NUTM2EB1AL46 878 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 RSPH4AQ5TD94 716 aa15.19■□□□□ 0.02
NEDD9-203ENST00000397378 NUTM2DQ5VT03 806 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 NUTM2AQ8IVF1 878 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 KDM5AP29375 1690 aaKnown RBP15.19■□□□□ 0.02
NEDD9-203ENST00000397378 RGS12O14924 1447 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 MROH1Q8NDA8 1641 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 TSPY4P0CV99 314 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 TSPY10P0CW01 314 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 FOXD1Q16676 465 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 ZRANB1Q9UGI0 708 aa15.18■□□□□ 0.02
NEDD9-203ENST00000397378 AFF2P51816 1311 aa15.17■□□□□ 0.02
NEDD9-203ENST00000397378 TET3O43151 1660 aa15.16■□□□□ 0.02
NEDD9-203ENST00000397378 ARHGEF5Q12774 1597 aa15.16■□□□□ 0.02
NEDD9-203ENST00000397378 BCANQ96GW7 911 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms