RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 KDM5DQ9BY66 1539 aa21.92■■□□□ 1.1
TM9SF1-202ENST00000396854 AGLP35573 1532 aa21.91■■□□□ 1.1
TM9SF1-202ENST00000396854 SIGLEC1Q9BZZ2 1709 aa21.91■■□□□ 1.1
TM9SF1-202ENST00000396854 MROH1Q8NDA8 1641 aa21.89■■□□□ 1.1
TM9SF1-202ENST00000396854 PRDM15P57071 1507 aaPredicted RBP21.88■■□□□ 1.09
TM9SF1-202ENST00000396854 IQGAP3Q86VI3 1631 aa21.88■■□□□ 1.09
TM9SF1-202ENST00000396854 VWDEQ8N2E2 1590 aa21.85■■□□□ 1.09
TM9SF1-202ENST00000396854 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
TM9SF1-202ENST00000396854 CCER1Q8TC90 406 aaPredicted RBP21.85■■□□□ 1.09
TM9SF1-202ENST00000396854 KIF3BO15066 747 aa21.84■■□□□ 1.09
TM9SF1-202ENST00000396854 PZPP20742 1482 aa21.84■■□□□ 1.09
TM9SF1-202ENST00000396854 TRIM52Q96A61 297 aa21.83■■□□□ 1.08
TM9SF1-202ENST00000396854 FAM135AQ9P2D6 1515 aa21.82■■□□□ 1.08
TM9SF1-202ENST00000396854 NUP155O75694 1391 aa21.82■■□□□ 1.08
TM9SF1-202ENST00000396854 ZC3H13Q5T200 1668 aaKnown RBP21.79■■□□□ 1.08
TM9SF1-202ENST00000396854 CEP152O94986 1710 aa21.78■■□□□ 1.08
TM9SF1-202ENST00000396854 TET3O43151 1660 aa21.78■■□□□ 1.08
TM9SF1-202ENST00000396854 LMTK2Q8IWU2 1503 aa21.77■■□□□ 1.08
TM9SF1-202ENST00000396854 KANK1Q14678 1352 aa21.77■■□□□ 1.07
TM9SF1-202ENST00000396854 MPHOSPH9Q99550 1183 aa21.76■■□□□ 1.07
TM9SF1-202ENST00000396854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.75■■□□□ 1.07
TM9SF1-202ENST00000396854 SLC4A1APQ9BWU0 796 aaKnown RBP21.73■■□□□ 1.07
TM9SF1-202ENST00000396854 ABCC3O15438 1527 aa21.73■■□□□ 1.07
TM9SF1-202ENST00000396854 GGT6Q6P531 493 aa21.72■■□□□ 1.07
TM9SF1-202ENST00000396854 E9PCH4 1651 aa21.72■■□□□ 1.07
TM9SF1-202ENST00000396854 EFCAB6Q5THR3 1501 aa21.71■■□□□ 1.07
TM9SF1-202ENST00000396854 CAMSAP1Q5T5Y3 1602 aa21.71■■□□□ 1.07
TM9SF1-202ENST00000396854 CLSPNQ9HAW4 1339 aa21.71■■□□□ 1.07
TM9SF1-202ENST00000396854 PPP6R1Q9UPN7 881 aa21.7■■□□□ 1.06
TM9SF1-202ENST00000396854 CLTCQ00610 1675 aaKnown RBP21.68■■□□□ 1.06
TM9SF1-202ENST00000396854 ARID4BQ4LE39 1312 aaPredicted RBP21.66■■□□□ 1.06
TM9SF1-202ENST00000396854 PKD2Q13563 968 aa21.66■■□□□ 1.06
TM9SF1-202ENST00000396854 WASHC2CQ9Y4E1 1318 aa21.65■■□□□ 1.06
TM9SF1-202ENST00000396854 FER1L4A9Z1Z3 1794 aa21.64■■□□□ 1.05
TM9SF1-202ENST00000396854 RPRD2Q5VT52 1461 aaKnown RBP21.64■■□□□ 1.05
TM9SF1-202ENST00000396854 MROH2AA6NES4 1674 aa21.64■■□□□ 1.05
TM9SF1-202ENST00000396854 SPHKAPQ2M3C7 1700 aa21.64■■□□□ 1.05
TM9SF1-202ENST00000396854 ARHGAP31Q2M1Z3 1444 aa21.62■■□□□ 1.05
TM9SF1-202ENST00000396854 MLECQ14165 292 aa21.62■■□□□ 1.05
TM9SF1-202ENST00000396854 ANKRD30BQ9BXX2 1392 aa21.61■■□□□ 1.05
TM9SF1-202ENST00000396854 FOXD1Q16676 465 aa21.6■■□□□ 1.05
TM9SF1-202ENST00000396854 NPATQ14207 1427 aa21.6■■□□□ 1.05
TM9SF1-202ENST00000396854 CNTLNQ9NXG0 1405 aa21.6■■□□□ 1.05
TM9SF1-202ENST00000396854 ADAMTSL3P82987 1691 aa21.59■■□□□ 1.05
TM9SF1-202ENST00000396854 TRPM2O94759 1503 aa21.57■■□□□ 1.04
TM9SF1-202ENST00000396854 PTPRTO14522 1441 aa21.57■■□□□ 1.04
TM9SF1-202ENST00000396854 PREX1Q8TCU6 1659 aa21.57■■□□□ 1.04
TM9SF1-202ENST00000396854 CFAP65Q6ZU64 1925 aaKnown RBP21.56■■□□□ 1.04
TM9SF1-202ENST00000396854 PLA2R1Q13018 1463 aa21.56■■□□□ 1.04
TM9SF1-202ENST00000396854 MADDQ8WXG6 1647 aa21.56■■□□□ 1.04
TM9SF1-202ENST00000396854 ESF1Q9H501 851 aaKnown RBP21.53■■□□□ 1.04
TM9SF1-202ENST00000396854 C3P01024 1663 aa21.52■■□□□ 1.04
TM9SF1-202ENST00000396854 NOS1P29475 1434 aa21.52■■□□□ 1.04
TM9SF1-202ENST00000396854 RIMS1Q86UR5 1692 aaKnown RBP21.51■■□□□ 1.03
TM9SF1-202ENST00000396854 SPATA31D1Q6ZQQ2 1576 aa21.5■■□□□ 1.03
TM9SF1-202ENST00000396854 ZMYM3Q14202 1370 aa21.5■■□□□ 1.03
TM9SF1-202ENST00000396854 SYNMO15061 1565 aa21.5■■□□□ 1.03
TM9SF1-202ENST00000396854 CLTCL1P53675 1640 aa21.49■■□□□ 1.03
TM9SF1-202ENST00000396854 ERVK-7P63135 1459 aa21.49■■□□□ 1.03
TM9SF1-202ENST00000396854 SIN3AQ96ST3 1273 aa21.49■■□□□ 1.03
TM9SF1-202ENST00000396854 CCDC144AA2RUR9 1427 aa21.49■■□□□ 1.03
TM9SF1-202ENST00000396854 PIK3C2BO00750 1634 aa21.48■■□□□ 1.03
TM9SF1-202ENST00000396854 KIF1BO60333 1816 aa21.45■■□□□ 1.02
TM9SF1-202ENST00000396854 UGGT1Q9NYU2 1555 aa21.44■■□□□ 1.02
TM9SF1-202ENST00000396854 DIEXFQ68CQ4 756 aaKnown RBP21.44■■□□□ 1.02
TM9SF1-202ENST00000396854 NEURL4Q96JN8 1562 aa21.43■■□□□ 1.02
TM9SF1-202ENST00000396854 NEUROD1Q13562 356 aa21.42■■□□□ 1.02
TM9SF1-202ENST00000396854 SCAF1Q9H7N4 1312 aaKnown RBP21.42■■□□□ 1.02
TM9SF1-202ENST00000396854 FBXO31Q5XUX0 539 aaPredicted RBP21.4■■□□□ 1.02
TM9SF1-202ENST00000396854 TIMELESSQ9UNS1 1208 aa21.4■■□□□ 1.02
TM9SF1-202ENST00000396854 SPATA31E1Q6ZUB1 1445 aa21.37■■□□□ 1.01
TM9SF1-202ENST00000396854 TONSLQ96HA7 1378 aa21.37■■□□□ 1.01
TM9SF1-202ENST00000396854 ADGRB3O60242 1522 aa21.37■■□□□ 1.01
TM9SF1-202ENST00000396854 SLC52A1Q9NWF4 448 aa21.36■■□□□ 1.01
TM9SF1-202ENST00000396854 TNRQ92752 1358 aa21.35■■□□□ 1.01
TM9SF1-202ENST00000396854 KDM5AP29375 1690 aaKnown RBP21.35■■□□□ 1.01
TM9SF1-202ENST00000396854 PTPRMP28827 1452 aa21.35■■□□□ 1.01
TM9SF1-202ENST00000396854 CEBPAP49715 358 aaPredicted RBP21.34■■□□□ 1.01
TM9SF1-202ENST00000396854 TMEM131LA2VDJ0 1609 aa21.34■■□□□ 1.01
TM9SF1-202ENST00000396854 MYO5BQ9ULV0 1848 aa21.34■■□□□ 1.01
TM9SF1-202ENST00000396854 ZNF316A6NFI3 1004 aaPredicted RBP21.33■■□□□ 1
TM9SF1-202ENST00000396854 MYO3AQ8NEV4 1616 aa21.32■■□□□ 1
TM9SF1-202ENST00000396854 IFT172Q9UG01 1749 aa21.32■■□□□ 1
TM9SF1-202ENST00000396854 IDI1Q13907 227 aa21.31■■□□□ 1
TM9SF1-202ENST00000396854 NLRP1Q9C000 1473 aa21.31■■□□□ 1
TM9SF1-202ENST00000396854 SETD1BQ9UPS6 1966 aaKnown RBP21.3■■□□□ 1
TM9SF1-202ENST00000396854 UBR1Q8IWV7 1749 aa21.29■■□□□ 1
TM9SF1-202ENST00000396854 L3MBTL2Q969R5 705 aa21.28■■□□□ 1
TM9SF1-202ENST00000396854 PPLO60437 1756 aa21.27■■□□□ 1
TM9SF1-202ENST00000396854 ZNF142P52746 1687 aaPredicted RBP21.27■■□□□ 1
TM9SF1-202ENST00000396854 KDM4FA0A1W2PPD8 638 aa21.25■□□□□ 0.99
TM9SF1-202ENST00000396854 RGL3Q3MIN7 710 aa21.24■□□□□ 0.99
TM9SF1-202ENST00000396854 A2ML1A8K2U0 1454 aa21.24■□□□□ 0.99
TM9SF1-202ENST00000396854 CEP170BQ9Y4F5 1589 aaPredicted RBP21.23■□□□□ 0.99
TM9SF1-202ENST00000396854 PLPPR3Q6T4P5 718 aa21.23■□□□□ 0.99
TM9SF1-202ENST00000396854 NEXMIFQ5QGS0 1516 aa21.23■□□□□ 0.99
TM9SF1-202ENST00000396854 PPP1R15AO75807 674 aaPredicted RBP21.22■□□□□ 0.99
TM9SF1-202ENST00000396854 CHGAP10645 457 aaKnown RBP21.21■□□□□ 0.99
TM9SF1-202ENST00000396854 MYOM2P54296 1465 aa21.2■□□□□ 0.98
TM9SF1-202ENST00000396854 UHRF1BP1Q6BDS2 1440 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms