RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 WASHC2CQ9Y4E1 1318 aa36.41■■■■□ 3.42
SHMT1-204ENST00000395682 DUOX2Q9NRD8 1548 aa36.4■■■■□ 3.42
SHMT1-204ENST00000395682 ANKRD30AQ9BXX3 1397 aa36.38■■■■□ 3.41
SHMT1-204ENST00000395682 PREX1Q8TCU6 1659 aa36.37■■■■□ 3.41
SHMT1-204ENST00000395682 UHRF1BP1Q6BDS2 1440 aa36.36■■■■□ 3.41
SHMT1-204ENST00000395682 NPATQ14207 1427 aa36.34■■■■□ 3.41
SHMT1-204ENST00000395682 NCOA1Q15788 1441 aa36.32■■■■□ 3.4
SHMT1-204ENST00000395682 EIF2AK4Q9P2K8 1649 aaKnown RBP36.31■■■■□ 3.4
SHMT1-204ENST00000395682 PTPRKQ15262 1439 aa36.31■■■■□ 3.4
SHMT1-204ENST00000395682 KDM5DQ9BY66 1539 aa36.3■■■■□ 3.4
SHMT1-204ENST00000395682 FAM135AQ9P2D6 1515 aa36.29■■■■□ 3.4
SHMT1-204ENST00000395682 ERBINQ96RT1 1412 aa36.28■■■■□ 3.4
SHMT1-204ENST00000395682 RNF17Q9BXT8 1623 aaKnown RBP36.28■■■■□ 3.4
SHMT1-204ENST00000395682 ADGRL2O95490 1459 aa36.24■■■■□ 3.39
SHMT1-204ENST00000395682 FBXO31Q5XUX0 539 aaPredicted RBP36.24■■■■□ 3.39
SHMT1-204ENST00000395682 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.21■■■■□ 3.39
SHMT1-204ENST00000395682 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.2■■■■□ 3.39
SHMT1-204ENST00000395682 ITGAEP38570 1179 aa36.2■■■■□ 3.39
SHMT1-204ENST00000395682 ABCC3O15438 1527 aa36.18■■■■□ 3.38
SHMT1-204ENST00000395682 PZPP20742 1482 aa36.18■■■■□ 3.38
SHMT1-204ENST00000395682 MROH1Q8NDA8 1641 aa36.18■■■■□ 3.38
SHMT1-204ENST00000395682 TNRQ92752 1358 aa36.12■■■■□ 3.37
SHMT1-204ENST00000395682 ZC3H13Q5T200 1668 aaKnown RBP36.11■■■■□ 3.37
SHMT1-204ENST00000395682 ANKRD50Q9ULJ7 1429 aa36.1■■■■□ 3.37
SHMT1-204ENST00000395682 KANK1Q14678 1352 aa36.1■■■■□ 3.37
SHMT1-204ENST00000395682 RRBP1Q9P2E9 1410 aaKnown RBP36.09■■■■□ 3.37
SHMT1-204ENST00000395682 ROCK1Q13464 1354 aa36.09■■■■□ 3.37
SHMT1-204ENST00000395682 PRDM15P57071 1507 aaPredicted RBP36.08■■■■□ 3.37
SHMT1-204ENST00000395682 MYO3AQ8NEV4 1616 aa36.07■■■■□ 3.36
SHMT1-204ENST00000395682 CEP152O94986 1710 aa36.05■■■■□ 3.36
SHMT1-204ENST00000395682 DEPDC5O75140 1603 aa36.05■■■■□ 3.36
SHMT1-204ENST00000395682 DMRT2Q9Y5R5 561 aa36.05■■■■□ 3.36
SHMT1-204ENST00000395682 CEP170BQ9Y4F5 1589 aaPredicted RBP36.02■■■■□ 3.36
SHMT1-204ENST00000395682 STRCQ7RTU9 1775 aa36.02■■■■□ 3.36
SHMT1-204ENST00000395682 A2ML1A8K2U0 1454 aa36.01■■■■□ 3.36
SHMT1-204ENST00000395682 CAMSAP1Q5T5Y3 1602 aa36.01■■■■□ 3.35
SHMT1-204ENST00000395682 ZNF142P52746 1687 aaPredicted RBP35.99■■■■□ 3.35
SHMT1-204ENST00000395682 ARHGAP31Q2M1Z3 1444 aa35.98■■■■□ 3.35
SHMT1-204ENST00000395682 ERVK-7P63135 1459 aa35.96■■■■□ 3.35
SHMT1-204ENST00000395682 VWDEQ8N2E2 1590 aa35.94■■■■□ 3.34
SHMT1-204ENST00000395682 NLRP1Q9C000 1473 aa35.94■■■■□ 3.34
SHMT1-204ENST00000395682 NCKAP5LQ9HCH0 1330 aa35.94■■■■□ 3.34
SHMT1-204ENST00000395682 CFAP65Q6ZU64 1925 aaKnown RBP35.94■■■■□ 3.34
SHMT1-204ENST00000395682 SPATA31D1Q6ZQQ2 1576 aa35.93■■■■□ 3.34
SHMT1-204ENST00000395682 LMTK2Q8IWU2 1503 aa35.92■■■■□ 3.34
SHMT1-204ENST00000395682 THEMISQ8N1K5 641 aaPredicted RBP35.89■■■■□ 3.34
SHMT1-204ENST00000395682 PTPRTO14522 1441 aa35.89■■■■□ 3.34
SHMT1-204ENST00000395682 PLA2R1Q13018 1463 aa35.88■■■■□ 3.33
SHMT1-204ENST00000395682 PKD2Q13563 968 aa35.88■■■■□ 3.33
SHMT1-204ENST00000395682 UGGT1Q9NYU2 1555 aa35.82■■■■□ 3.32
SHMT1-204ENST00000395682 UNC13BO14795 1591 aa35.8■■■■□ 3.32
SHMT1-204ENST00000395682 EFCAB6Q5THR3 1501 aa35.79■■■■□ 3.32
SHMT1-204ENST00000395682 NUP155O75694 1391 aa35.78■■■■□ 3.32
SHMT1-204ENST00000395682 ANKLE2Q86XL3 938 aa35.77■■■■□ 3.32
SHMT1-204ENST00000395682 NAIPQ13075 1403 aa35.73■■■■□ 3.31
SHMT1-204ENST00000395682 IDI1Q13907 227 aa35.72■■■■□ 3.31
SHMT1-204ENST00000395682 NOS1P29475 1434 aa35.72■■■■□ 3.31
SHMT1-204ENST00000395682 TET3O43151 1660 aa35.72■■■■□ 3.31
SHMT1-204ENST00000395682 ILDR1Q86SU0 546 aaPredicted RBP35.71■■■■□ 3.31
SHMT1-204ENST00000395682 RPRD2Q5VT52 1461 aaKnown RBP35.71■■■■□ 3.31
SHMT1-204ENST00000395682 CERKQ8TCT0 537 aa35.7■■■■□ 3.31
SHMT1-204ENST00000395682 STAG3Q9UJ98 1225 aa35.69■■■■□ 3.3
SHMT1-204ENST00000395682 SLC52A1Q9NWF4 448 aa35.67■■■■□ 3.3
SHMT1-204ENST00000395682 IQGAP3Q86VI3 1631 aa35.67■■■■□ 3.3
SHMT1-204ENST00000395682 SYNMO15061 1565 aa35.65■■■■□ 3.3
SHMT1-204ENST00000395682 UBR1Q8IWV7 1749 aa35.65■■■■□ 3.3
SHMT1-204ENST00000395682 HFM1A2PYH4 1435 aa35.65■■■■□ 3.3
SHMT1-204ENST00000395682 GCC2Q8IWJ2 1684 aa35.64■■■■□ 3.3
SHMT1-204ENST00000395682 PIK3C2BO00750 1634 aa35.61■■■■□ 3.29
SHMT1-204ENST00000395682 POLR1AO95602 1720 aaPredicted RBP35.61■■■■□ 3.29
SHMT1-204ENST00000395682 NEURL4Q96JN8 1562 aa35.59■■■■□ 3.29
SHMT1-204ENST00000395682 FBXO41Q8TF61 875 aa35.59■■■■□ 3.29
SHMT1-204ENST00000395682 TXNDC2Q86VQ3 553 aa35.58■■■■□ 3.29
SHMT1-204ENST00000395682 E9PCH4 1651 aa35.58■■■■□ 3.29
SHMT1-204ENST00000395682 ZNF335Q9H4Z2 1342 aaPredicted RBP35.57■■■■□ 3.29
SHMT1-204ENST00000395682 NPHP4O75161 1426 aaPredicted RBP35.57■■■■□ 3.28
SHMT1-204ENST00000395682 LTKP29376 864 aa35.56■■■■□ 3.28
SHMT1-204ENST00000395682 TRIM52Q96A61 297 aa35.56■■■■□ 3.28
SHMT1-204ENST00000395682 MED14O60244 1454 aa35.55■■■■□ 3.28
SHMT1-204ENST00000395682 EID1Q9Y6B2 187 aa35.55■■■■□ 3.28
SHMT1-204ENST00000395682 ARHGAP23Q9P227 1491 aa35.54■■■■□ 3.28
SHMT1-204ENST00000395682 LTBP4Q8N2S1 1624 aa35.54■■■■□ 3.28
SHMT1-204ENST00000395682 TMEM2Q9UHN6 1383 aa35.53■■■■□ 3.28
SHMT1-204ENST00000395682 SLIT1O75093 1534 aa35.52■■■■□ 3.28
SHMT1-204ENST00000395682 SCAF11Q99590 1463 aaKnown RBP35.5■■■■□ 3.27
SHMT1-204ENST00000395682 KDM5AP29375 1690 aaKnown RBP35.49■■■■□ 3.27
SHMT1-204ENST00000395682 CHGAP10645 457 aaKnown RBP35.46■■■■□ 3.27
SHMT1-204ENST00000395682 ADGRB3O60242 1522 aa35.46■■■■□ 3.27
SHMT1-204ENST00000395682 IQGAP1P46940 1657 aa35.44■■■■□ 3.26
SHMT1-204ENST00000395682 SLC4A1APQ9BWU0 796 aaKnown RBP35.41■■■■□ 3.26
SHMT1-204ENST00000395682 HDGFP51858 240 aaKnown RBP35.36■■■■□ 3.25
SHMT1-204ENST00000395682 TMEM131LA2VDJ0 1609 aa35.35■■■■□ 3.25
SHMT1-204ENST00000395682 SETD5Q9C0A6 1442 aa35.32■■■■□ 3.25
SHMT1-204ENST00000395682 MYO5BQ9ULV0 1848 aa35.32■■■■□ 3.24
SHMT1-204ENST00000395682 SPHKAPQ2M3C7 1700 aa35.32■■■■□ 3.24
SHMT1-204ENST00000395682 RIMS2Q9UQ26 1411 aa35.32■■■■□ 3.24
SHMT1-204ENST00000395682 IQSEC2Q5JU85 1478 aa35.3■■■■□ 3.24
SHMT1-204ENST00000395682 PPP1R15AO75807 674 aaPredicted RBP35.3■■■■□ 3.24
SHMT1-204ENST00000395682 BCANQ96GW7 911 aa35.3■■■■□ 3.24
SHMT1-204ENST00000395682 ZFYVE9O95405 1425 aa35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms