RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 CAMSAP2Q08AD1 1489 aa33.82■■■■□ 3
TRAF4-203ENST00000394925 DNMT1P26358 1616 aaKnown RBP33.81■■■■□ 3
TRAF4-203ENST00000394925 FBXO31Q5XUX0 539 aaPredicted RBP33.8■■■■□ 3
TRAF4-203ENST00000394925 RSPH4AQ5TD94 716 aa33.78■■■■□ 3
TRAF4-203ENST00000394925 TNRQ92752 1358 aa33.76■■■■□ 3
TRAF4-203ENST00000394925 SOCS7O14512 581 aa33.76■■■□□ 2.99
TRAF4-203ENST00000394925 KDM5DQ9BY66 1539 aa33.74■■■□□ 2.99
TRAF4-203ENST00000394925 WASHC2CQ9Y4E1 1318 aa33.74■■■□□ 2.99
TRAF4-203ENST00000394925 PZPP20742 1482 aa33.72■■■□□ 2.99
TRAF4-203ENST00000394925 FAM135AQ9P2D6 1515 aa33.69■■■□□ 2.98
TRAF4-203ENST00000394925 TSPY4P0CV99 314 aa33.69■■■□□ 2.98
TRAF4-203ENST00000394925 TSPY10P0CW01 314 aa33.69■■■□□ 2.98
TRAF4-203ENST00000394925 POLR1AO95602 1720 aaPredicted RBP33.68■■■□□ 2.98
TRAF4-203ENST00000394925 ARHGEF5Q12774 1597 aa33.67■■■□□ 2.98
TRAF4-203ENST00000394925 NEURL4Q96JN8 1562 aa33.64■■■□□ 2.98
TRAF4-203ENST00000394925 MIA2Q96PC5 1412 aa33.62■■■□□ 2.97
TRAF4-203ENST00000394925 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.62■■■□□ 2.971e-7■■□□□ 12.7
TRAF4-203ENST00000394925 ANKLE2Q86XL3 938 aa33.61■■■□□ 2.97
TRAF4-203ENST00000394925 THEMISQ8N1K5 641 aaPredicted RBP33.6■■■□□ 2.97
TRAF4-203ENST00000394925 LRRC9Q6ZRR7 1453 aa33.58■■■□□ 2.97
TRAF4-203ENST00000394925 NLRP1Q9C000 1473 aa33.57■■■□□ 2.97
TRAF4-203ENST00000394925 SHANK2Q9UPX8 1470 aa33.57■■■□□ 2.97
TRAF4-203ENST00000394925 SCAF1Q9H7N4 1312 aaKnown RBP33.56■■■□□ 2.96
TRAF4-203ENST00000394925 CPS1P31327 1500 aa33.56■■■□□ 2.96
TRAF4-203ENST00000394925 UGGT1Q9NYU2 1555 aa33.55■■■□□ 2.96
TRAF4-203ENST00000394925 VPS8Q8N3P4 1428 aa33.55■■■□□ 2.96
TRAF4-203ENST00000394925 PIP4K2BP78356 416 aa33.53■■■□□ 2.96
TRAF4-203ENST00000394925 RNF17Q9BXT8 1623 aaKnown RBP33.51■■■□□ 2.96
TRAF4-203ENST00000394925 LOC105371045A0A1W2PR82 267 aa33.51■■■□□ 2.95
TRAF4-203ENST00000394925 TOM1O60784 492 aa33.51■■■□□ 2.95
TRAF4-203ENST00000394925 MAST1Q9Y2H9 1570 aa33.51■■■□□ 2.95
TRAF4-203ENST00000394925 ABCC3O15438 1527 aa33.49■■■□□ 2.95
TRAF4-203ENST00000394925 NPHP4O75161 1426 aaPredicted RBP33.49■■■□□ 2.95
TRAF4-203ENST00000394925 VWDEQ8N2E2 1590 aa33.48■■■□□ 2.95
TRAF4-203ENST00000394925 HSPA1LP34931 641 aa33.48■■■□□ 2.95
TRAF4-203ENST00000394925 KANK4Q5T7N3 995 aaPredicted RBP33.48■■■□□ 2.95
TRAF4-203ENST00000394925 DEPDC5O75140 1603 aa33.47■■■□□ 2.95
TRAF4-203ENST00000394925 MED14O60244 1454 aa33.46■■■□□ 2.95
TRAF4-203ENST00000394925 ZC3H13Q5T200 1668 aaKnown RBP33.45■■■□□ 2.95
TRAF4-203ENST00000394925 EIF2AK4Q9P2K8 1649 aaKnown RBP33.43■■■□□ 2.94
TRAF4-203ENST00000394925 MYOM3Q5VTT5 1437 aa33.41■■■□□ 2.94
TRAF4-203ENST00000394925 ERVK-7P63135 1459 aa33.41■■■□□ 2.94
TRAF4-203ENST00000394925 IQGAP1P46940 1657 aa33.41■■■□□ 2.94
TRAF4-203ENST00000394925 CFAP65Q6ZU64 1925 aaKnown RBP33.41■■■□□ 2.94
TRAF4-203ENST00000394925 MROH1Q8NDA8 1641 aa33.39■■■□□ 2.94
TRAF4-203ENST00000394925 MAP3K1Q13233 1512 aa33.39■■■□□ 2.94
TRAF4-203ENST00000394925 CEP152O94986 1710 aa33.38■■■□□ 2.93
TRAF4-203ENST00000394925 DUOX2Q9NRD8 1548 aa33.34■■■□□ 2.93
TRAF4-203ENST00000394925 MED1Q15648 1581 aaPredicted RBP33.31■■■□□ 2.92
TRAF4-203ENST00000394925 STRCP1A6NGW2 1772 aa33.31■■■□□ 2.92
TRAF4-203ENST00000394925 ALKQ9UM73 1620 aa33.3■■■□□ 2.92
TRAF4-203ENST00000394925 UBR1Q8IWV7 1749 aa33.29■■■□□ 2.92
TRAF4-203ENST00000394925 KIF15Q9NS87 1388 aa33.28■■■□□ 2.92
TRAF4-203ENST00000394925 LRRC7Q96NW7 1537 aa33.27■■■□□ 2.92
TRAF4-203ENST00000394925 RRP7BPQ9NSQ0 103 aa33.26■■■□□ 2.91
TRAF4-203ENST00000394925 SCAF11Q99590 1463 aaKnown RBP33.24■■■□□ 2.91
TRAF4-203ENST00000394925 ABCC5O15440 1437 aa33.23■■■□□ 2.91
TRAF4-203ENST00000394925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.22■■■□□ 2.912e-8■■■□□ 16.3
TRAF4-203ENST00000394925 SENP3Q9H4L4 574 aaPredicted RBP33.22■■■□□ 2.91
TRAF4-203ENST00000394925 PRDM15P57071 1507 aaPredicted RBP33.22■■■□□ 2.91
TRAF4-203ENST00000394925 CROCC2H7BZ55 1655 aa33.21■■■□□ 2.91
TRAF4-203ENST00000394925 LTKP29376 864 aa33.21■■■□□ 2.91
TRAF4-203ENST00000394925 TXNDC2Q86VQ3 553 aa33.21■■■□□ 2.91
TRAF4-203ENST00000394925 SYNMO15061 1565 aa33.21■■■□□ 2.91
TRAF4-203ENST00000394925 ARHGAP31Q2M1Z3 1444 aa33.2■■■□□ 2.91
TRAF4-203ENST00000394925 ERBINQ96RT1 1412 aa33.2■■■□□ 2.91
TRAF4-203ENST00000394925 PTPN23Q9H3S7 1636 aa33.2■■■□□ 2.9
TRAF4-203ENST00000394925 APLP2Q06481 763 aa33.17■■■□□ 2.9
TRAF4-203ENST00000394925 ARHGAP23Q9P227 1491 aa33.17■■■□□ 2.9
TRAF4-203ENST00000394925 SLIT1O75093 1534 aa33.17■■■□□ 2.9
TRAF4-203ENST00000394925 DAPK1P53355 1430 aa33.14■■■□□ 2.9
TRAF4-203ENST00000394925 EID1Q9Y6B2 187 aa33.14■■■□□ 2.9
TRAF4-203ENST00000394925 PHF23Q9BUL5 403 aaPredicted RBP33.13■■■□□ 2.89
TRAF4-203ENST00000394925 KANK1Q14678 1352 aa33.12■■■□□ 2.89
TRAF4-203ENST00000394925 PIK3C2BO00750 1634 aa33.11■■■□□ 2.89
TRAF4-203ENST00000394925 STAG3Q9UJ98 1225 aa33.1■■■□□ 2.89
TRAF4-203ENST00000394925 CHIC2Q9UKJ5 165 aa33.1■■■□□ 2.89
TRAF4-203ENST00000394925 FGD6Q6ZV73 1430 aa33.08■■■□□ 2.89
TRAF4-203ENST00000394925 TMEM2Q9UHN6 1383 aa33.06■■■□□ 2.88
TRAF4-203ENST00000394925 ANKRD30AQ9BXX3 1397 aa33.05■■■□□ 2.88
TRAF4-203ENST00000394925 XIRP1Q702N8 1843 aaKnown RBP33.04■■■□□ 2.88
TRAF4-203ENST00000394925 IDI1Q13907 227 aa33.02■■■□□ 2.88
TRAF4-203ENST00000394925 EFCAB6Q5THR3 1501 aa33■■■□□ 2.87
TRAF4-203ENST00000394925 LMTK2Q8IWU2 1503 aa33■■■□□ 2.87
TRAF4-203ENST00000394925 KDM5AP29375 1690 aaKnown RBP32.97■■■□□ 2.87
TRAF4-203ENST00000394925 SLC26A8Q96RN1 970 aa32.93■■■□□ 2.86
TRAF4-203ENST00000394925 KCNA6P17658 529 aa32.91■■■□□ 2.86
TRAF4-203ENST00000394925 TMEM94Q12767 1356 aa32.91■■■□□ 2.86
TRAF4-203ENST00000394925 NOS1P29475 1434 aa32.91■■■□□ 2.86
TRAF4-203ENST00000394925 TET3O43151 1660 aa32.88■■■□□ 2.85
TRAF4-203ENST00000394925 PROSER2Q86WR7 435 aaPredicted RBP32.87■■■□□ 2.85
TRAF4-203ENST00000394925 ADGRB3O60242 1522 aa32.87■■■□□ 2.85
TRAF4-203ENST00000394925 FAM135BQ49AJ0 1406 aa32.86■■■□□ 2.85
TRAF4-203ENST00000394925 FAM50AQ14320 339 aaKnown RBP32.86■■■□□ 2.85
TRAF4-203ENST00000394925 RBM33Q96EV2 1170 aaKnown RBP32.86■■■□□ 2.85
TRAF4-203ENST00000394925 ADGRL2O95490 1459 aa32.86■■■□□ 2.85
TRAF4-203ENST00000394925 SLC52A1Q9NWF4 448 aa32.85■■■□□ 2.85
TRAF4-203ENST00000394925 BCANQ96GW7 911 aa32.84■■■□□ 2.85
TRAF4-203ENST00000394925 RGS17Q9UGC6 210 aaPredicted RBP32.82■■■□□ 2.84
TRAF4-203ENST00000394925 ANKRD50Q9ULJ7 1429 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms