RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 NAP1L5Q96NT1 182 aaPredicted RBP11.7□□□□□ -0.54
RTN4-206ENST00000394611 FANCAO15360 1455 aa11.7□□□□□ -0.54
RTN4-206ENST00000394611 RGL3Q3MIN7 710 aa11.69□□□□□ -0.54
RTN4-206ENST00000394611 HNRNPMP52272 730 aaKnown RBP eCLIP11.69□□□□□ -0.547e-7■■■■□ 22.8
RTN4-206ENST00000394611 PTPN23Q9H3S7 1636 aa11.69□□□□□ -0.54
RTN4-206ENST00000394611 PPRC1Q5VV67 1664 aaKnown RBP11.69□□□□□ -0.54
RTN4-206ENST00000394611 EXOC6Q8TAG9 804 aa11.69□□□□□ -0.54
RTN4-206ENST00000394611 SETD5Q9C0A6 1442 aa11.69□□□□□ -0.54
RTN4-206ENST00000394611 CC2D1BQ5T0F9 858 aaKnown RBP11.68□□□□□ -0.54
RTN4-206ENST00000394611 SAMD9LQ8IVG5 1584 aa11.68□□□□□ -0.54
RTN4-206ENST00000394611 CAMSAP2Q08AD1 1489 aa11.68□□□□□ -0.54
RTN4-206ENST00000394611 MIA2Q96PC5 1412 aa11.68□□□□□ -0.54
RTN4-206ENST00000394611 RRBP1Q9P2E9 1410 aaKnown RBP11.67□□□□□ -0.54
RTN4-206ENST00000394611 AKNAQ7Z591 1439 aa11.66□□□□□ -0.54
RTN4-206ENST00000394611 ARHGEF12Q9NZN5 1544 aa11.65□□□□□ -0.54
RTN4-206ENST00000394611 NEUROD2Q15784 382 aa11.65□□□□□ -0.54
RTN4-206ENST00000394611 C11orf95C9JLR9 678 aaPredicted RBP11.65□□□□□ -0.54
RTN4-206ENST00000394611 ARAP3Q8WWN8 1544 aa11.65□□□□□ -0.55
RTN4-206ENST00000394611 SYCP2Q9BX26 1530 aa11.65□□□□□ -0.55
RTN4-206ENST00000394611 ADGRL1O94910 1474 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 TPRNQ4KMQ1 711 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 SCAPERQ9BY12 1400 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 TCOF1Q13428 1488 aaKnown RBP11.64□□□□□ -0.55
RTN4-206ENST00000394611 AFAP1Q8N556 730 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 L3MBTL2Q969R5 705 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.64□□□□□ -0.55
RTN4-206ENST00000394611 RAPGEF3O95398 923 aa11.64□□□□□ -0.55
RTN4-206ENST00000394611 TEX14Q8IWB6 1497 aa11.63□□□□□ -0.55
RTN4-206ENST00000394611 TRAPPC8Q9Y2L5 1435 aa11.62□□□□□ -0.55
RTN4-206ENST00000394611 ABCC1P33527 1531 aa11.62□□□□□ -0.55
RTN4-206ENST00000394611 PRKRIP1Q9H875 184 aaPredicted RBP11.62□□□□□ -0.55
RTN4-206ENST00000394611 NEO1Q92859 1461 aa11.62□□□□□ -0.55
RTN4-206ENST00000394611 PDE4AP27815 886 aa11.61□□□□□ -0.55
RTN4-206ENST00000394611 MBD5Q9P267 1494 aa11.61□□□□□ -0.55
RTN4-206ENST00000394611 WASHC2AQ641Q2 1341 aa11.61□□□□□ -0.55
RTN4-206ENST00000394611 PTPRKQ15262 1439 aa11.61□□□□□ -0.55
RTN4-206ENST00000394611 CFAP74Q9C0B2 1584 aa11.61□□□□□ -0.55
RTN4-206ENST00000394611 PPM1GO15355 546 aaPredicted RBP11.6□□□□□ -0.55
RTN4-206ENST00000394611 COL17A1Q9UMD9 1497 aaPredicted RBP11.6□□□□□ -0.55
RTN4-206ENST00000394611 ABCC5O15440 1437 aa11.6□□□□□ -0.55
RTN4-206ENST00000394611 DAPK1P53355 1430 aa11.59□□□□□ -0.55
RTN4-206ENST00000394611 KIAA1107Q9UPP5 1409 aa11.59□□□□□ -0.55
RTN4-206ENST00000394611 PLEKHH2Q8IVE3 1493 aa11.59□□□□□ -0.55
RTN4-206ENST00000394611 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.58□□□□□ -0.56
RTN4-206ENST00000394611 DNMT1P26358 1616 aaKnown RBP11.58□□□□□ -0.56
RTN4-206ENST00000394611 DENND4BO75064 1496 aaPredicted RBP11.58□□□□□ -0.56
RTN4-206ENST00000394611 VSIG10Q8N0Z9 540 aa11.58□□□□□ -0.56
RTN4-206ENST00000394611 TSPY4P0CV99 314 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 TSPY10P0CW01 314 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 CARD11Q9BXL7 1154 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 NUDCQ9Y266 331 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 FRAT1Q92837 279 aaPredicted RBP11.57□□□□□ -0.56
RTN4-206ENST00000394611 RCAN3Q9UKA8 241 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 CCDC141Q6ZP82 1450 aa11.57□□□□□ -0.56
RTN4-206ENST00000394611 HSP90AA1P07900 732 aaKnown RBP11.57□□□□□ -0.56
RTN4-206ENST00000394611 TNNT2P45379 298 aaPredicted RBP11.57□□□□□ -0.56
RTN4-206ENST00000394611 POGZQ7Z3K3 1410 aa11.56□□□□□ -0.56
RTN4-206ENST00000394611 ARHGEF5Q12774 1597 aa11.56□□□□□ -0.56
RTN4-206ENST00000394611 SPAG9O60271 1321 aaKnown RBP11.55□□□□□ -0.56
RTN4-206ENST00000394611 RICTORQ6R327 1708 aa11.55□□□□□ -0.56
RTN4-206ENST00000394611 C9orf84Q5VXU9 1444 aa11.55□□□□□ -0.56
RTN4-206ENST00000394611 RSPH4AQ5TD94 716 aa11.55□□□□□ -0.56
RTN4-206ENST00000394611 ZNF518AQ6AHZ1 1483 aa11.55□□□□□ -0.56
RTN4-206ENST00000394611 FRMPD1Q5SYB0 1578 aa11.55□□□□□ -0.56
RTN4-206ENST00000394611 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
RTN4-206ENST00000394611 CDCA7LQ96GN5 454 aa11.54□□□□□ -0.56
RTN4-206ENST00000394611 CROCC2H7BZ55 1655 aa11.54□□□□□ -0.56
RTN4-206ENST00000394611 GSE1Q14687 1217 aa11.54□□□□□ -0.56
RTN4-206ENST00000394611 KDM6BO15054 1643 aa11.54□□□□□ -0.56
RTN4-206ENST00000394611 FRAT2O75474 233 aaPredicted RBP11.53□□□□□ -0.56
RTN4-206ENST00000394611 GLIPR1L2Q4G1C9 344 aa11.53□□□□□ -0.56
RTN4-206ENST00000394611 DDRGK1Q96HY6 314 aa11.53□□□□□ -0.56
RTN4-206ENST00000394611 WDR43Q15061 677 aaKnown RBP eCLIP11.52□□□□□ -0.56
RTN4-206ENST00000394611 NFKBIBQ15653 356 aa11.52□□□□□ -0.56
RTN4-206ENST00000394611 ERICH6BQ5W0A0 696 aa11.51□□□□□ -0.57
RTN4-206ENST00000394611 CRBNQ96SW2 442 aa11.51□□□□□ -0.57
RTN4-206ENST00000394611 KDM5CP41229 1560 aa11.51□□□□□ -0.57
RTN4-206ENST00000394611 YEATS2Q9ULM3 1422 aa11.51□□□□□ -0.57
RTN4-206ENST00000394611 KIDINS220Q9ULH0 1771 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 ATP7AQ04656 1500 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 ZFYVE16Q7Z3T8 1539 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 SHANK2Q9UPX8 1470 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 ZBED9Q6R2W3 1325 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 NCOA1Q15788 1441 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 MPHOSPH9Q99550 1183 aa11.5□□□□□ -0.57
RTN4-206ENST00000394611 DCAF11Q8TEB1 546 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 FOXD4L1Q9NU39 408 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 ANKRD30AQ9BXX3 1397 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 HECW2Q9P2P5 1572 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 INO80Q9ULG1 1556 aaPredicted RBP11.49□□□□□ -0.57
RTN4-206ENST00000394611 CCDC146Q8IYE0 955 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 ADGBQ8N7X0 1667 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 KIF15Q9NS87 1388 aa11.49□□□□□ -0.57
RTN4-206ENST00000394611 UPF2Q9HAU5 1272 aaKnown RBP11.49□□□□□ -0.57
RTN4-206ENST00000394611 MAST1Q9Y2H9 1570 aa11.48□□□□□ -0.57
RTN4-206ENST00000394611 MLH3Q9UHC1 1453 aa11.48□□□□□ -0.57
RTN4-206ENST00000394611 NCLP19338 710 aaKnown RBP11.48□□□□□ -0.57
RTN4-206ENST00000394611 RTEL1-TNFRSF6BF6WH68 1400 aa11.47□□□□□ -0.57
RTN4-206ENST00000394611 ADGRL2O95490 1459 aa11.47□□□□□ -0.57
RTN4-206ENST00000394611 ABCA6Q8N139 1617 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms