RNA–Protein interactions for RNA: ENST00000392811.6

SMARCD3-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 2,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-203ENST00000392811 KDM2AQ9Y2K7 1162 aa35.57■■■■□ 3.28
SMARCD3-203ENST00000392811 SPAG9O60271 1321 aaKnown RBP35.55■■■■□ 3.28
SMARCD3-203ENST00000392811 RTEL1-TNFRSF6BF6WH68 1400 aa35.54■■■■□ 3.28
SMARCD3-203ENST00000392811 ZFYVE16Q7Z3T8 1539 aa35.54■■■■□ 3.28
SMARCD3-203ENST00000392811 AFAP1Q8N556 730 aa35.53■■■■□ 3.28
SMARCD3-203ENST00000392811 FANCAO15360 1455 aa35.52■■■■□ 3.28
SMARCD3-203ENST00000392811 OSCARQ8IYS5 282 aa35.51■■■■□ 3.28
SMARCD3-203ENST00000392811 ASXL2Q76L83 1435 aa35.51■■■■□ 3.27
SMARCD3-203ENST00000392811 CARD11Q9BXL7 1154 aa35.5■■■■□ 3.27
SMARCD3-203ENST00000392811 PRKRIP1Q9H875 184 aaPredicted RBP35.47■■■■□ 3.27
SMARCD3-203ENST00000392811 ATP10AO60312 1499 aa35.46■■■■□ 3.27
SMARCD3-203ENST00000392811 SUPT16HQ9Y5B9 1047 aaKnown RBP35.45■■■■□ 3.27
SMARCD3-203ENST00000392811 PRAG1Q86YV5 1406 aa35.42■■■■□ 3.26
SMARCD3-203ENST00000392811 ARID4BQ4LE39 1312 aaPredicted RBP35.42■■■■□ 3.26
SMARCD3-203ENST00000392811 INO80Q9ULG1 1556 aaPredicted RBP35.42■■■■□ 3.26
SMARCD3-203ENST00000392811 A2MP01023 1474 aa35.4■■■■□ 3.26
SMARCD3-203ENST00000392811 TRPM1Q7Z4N2 1603 aa35.4■■■■□ 3.26
SMARCD3-203ENST00000392811 ATP7AQ04656 1500 aa35.4■■■■□ 3.26
SMARCD3-203ENST00000392811 RGL3Q3MIN7 710 aa35.4■■■■□ 3.26
SMARCD3-203ENST00000392811 ADGRL1O94910 1474 aa35.39■■■■□ 3.26
SMARCD3-203ENST00000392811 ROCK2O75116 1388 aaKnown RBP35.38■■■■□ 3.25
SMARCD3-203ENST00000392811 SCAPERQ9BY12 1400 aa35.36■■■■□ 3.25
SMARCD3-203ENST00000392811 CCDC184Q52MB2 194 aa35.35■■■■□ 3.25
SMARCD3-203ENST00000392811 DEPDC5O75140 1603 aa35.35■■■■□ 3.25
SMARCD3-203ENST00000392811 POLR3GLQ9BT43 218 aa35.33■■■■□ 3.25
SMARCD3-203ENST00000392811 E9PCH4 1651 aa35.33■■■■□ 3.25
SMARCD3-203ENST00000392811 ST20-MTHFSA0A0A6YYL1 179 aa35.32■■■■□ 3.25
SMARCD3-203ENST00000392811 DHX29Q7Z478 1369 aaKnown RBP35.32■■■■□ 3.25
SMARCD3-203ENST00000392811 NPM1P06748 294 aaKnown RBP eCLIP35.31■■■■□ 3.24
SMARCD3-203ENST00000392811 HNRNPUQ00839 825 aaKnown RBP eCLIP35.28■■■■□ 3.24
SMARCD3-203ENST00000392811 GPRASP1Q5JY77 1395 aa35.25■■■■□ 3.23
SMARCD3-203ENST00000392811 MRS2Q9HD23 443 aa35.23■■■■□ 3.23
SMARCD3-203ENST00000392811 EIF2AK4Q9P2K8 1649 aaKnown RBP35.23■■■■□ 3.23
SMARCD3-203ENST00000392811 NBPF1Q3BBV0 1214 aa35.23■■■■□ 3.23
SMARCD3-203ENST00000392811 MYT1LQ9UL68 1186 aa35.23■■■■□ 3.23
SMARCD3-203ENST00000392811 LAMC1P11047 1609 aa35.22■■■■□ 3.23
SMARCD3-203ENST00000392811 TRPM2O94759 1503 aa35.22■■■■□ 3.23
SMARCD3-203ENST00000392811 TET3O43151 1660 aa35.22■■■■□ 3.23
SMARCD3-203ENST00000392811 PELP1Q8IZL8 1130 aaKnown RBP35.22■■■■□ 3.23
SMARCD3-203ENST00000392811 VWDEQ8N2E2 1590 aa35.22■■■■□ 3.23
SMARCD3-203ENST00000392811 SPHKAPQ2M3C7 1700 aa35.2■■■■□ 3.23
SMARCD3-203ENST00000392811 KANK1Q14678 1352 aa35.18■■■■□ 3.22
SMARCD3-203ENST00000392811 PTPRTO14522 1441 aa35.18■■■■□ 3.22
SMARCD3-203ENST00000392811 KIDINS220Q9ULH0 1771 aa35.17■■■■□ 3.22
SMARCD3-203ENST00000392811 KIF3BO15066 747 aa35.17■■■■□ 3.22
SMARCD3-203ENST00000392811 PRDM15P57071 1507 aaPredicted RBP35.16■■■■□ 3.22
SMARCD3-203ENST00000392811 ZNF518AQ6AHZ1 1483 aa35.15■■■■□ 3.22
SMARCD3-203ENST00000392811 MROH1Q8NDA8 1641 aa35.14■■■■□ 3.22
SMARCD3-203ENST00000392811 CD109Q6YHK3 1445 aa35.14■■■■□ 3.22
SMARCD3-203ENST00000392811 CEP152O94986 1710 aa35.14■■■■□ 3.22
SMARCD3-203ENST00000392811 FAM9BQ8IZU0 186 aa35.13■■■■□ 3.21
SMARCD3-203ENST00000392811 CLTCL1P53675 1640 aa35.12■■■■□ 3.21
SMARCD3-203ENST00000392811 CFAP74Q9C0B2 1584 aa35.12■■■■□ 3.21
SMARCD3-203ENST00000392811 FKBP8Q14318 412 aa35.1■■■■□ 3.21
SMARCD3-203ENST00000392811 RNF17Q9BXT8 1623 aaKnown RBP35.08■■■■□ 3.21
SMARCD3-203ENST00000392811 CNGB1Q14028 1251 aaPredicted RBP35.07■■■■□ 3.2
SMARCD3-203ENST00000392811 MADDQ8WXG6 1647 aa35.06■■■■□ 3.2
SMARCD3-203ENST00000392811 POGZQ7Z3K3 1410 aa35.04■■■■□ 3.2
SMARCD3-203ENST00000392811 NEFLP07196 543 aa35.03■■■■□ 3.2
SMARCD3-203ENST00000392811 COL17A1Q9UMD9 1497 aaPredicted RBP35.01■■■■□ 3.19
SMARCD3-203ENST00000392811 TESK2Q96S53 571 aa35■■■■□ 3.19
SMARCD3-203ENST00000392811 EFCAB6Q5THR3 1501 aa34.98■■■■□ 3.19
SMARCD3-203ENST00000392811 MLH3Q9UHC1 1453 aa34.96■■■■□ 3.19
SMARCD3-203ENST00000392811 STAC3Q96MF2 364 aa34.95■■■■□ 3.19
SMARCD3-203ENST00000392811 DISP3Q9P2K9 1392 aa34.95■■■■□ 3.19
SMARCD3-203ENST00000392811 HECW2Q9P2P5 1572 aa34.95■■■■□ 3.18
SMARCD3-203ENST00000392811 PPRC1Q5VV67 1664 aaKnown RBP34.94■■■■□ 3.18
SMARCD3-203ENST00000392811 BCANQ96GW7 911 aa34.94■■■■□ 3.18
SMARCD3-203ENST00000392811 NEURL4Q96JN8 1562 aa34.93■■■■□ 3.18
SMARCD3-203ENST00000392811 ZBED9Q6R2W3 1325 aa34.93■■■■□ 3.18
SMARCD3-203ENST00000392811 LMTK2Q8IWU2 1503 aa34.93■■■■□ 3.18
SMARCD3-203ENST00000392811 FRMPD1Q5SYB0 1578 aa34.92■■■■□ 3.18
SMARCD3-203ENST00000392811 KTN1Q86UP2 1357 aaKnown RBP34.91■■■■□ 3.18
SMARCD3-203ENST00000392811 IQGAP1P46940 1657 aa34.91■■■■□ 3.18
SMARCD3-203ENST00000392811 UGGT1Q9NYU2 1555 aa34.9■■■■□ 3.18
SMARCD3-203ENST00000392811 NEO1Q92859 1461 aa34.89■■■■□ 3.18
SMARCD3-203ENST00000392811 RALBP1Q15311 655 aa34.86■■■■□ 3.17
SMARCD3-203ENST00000392811 TMF1P82094 1093 aa34.86■■■■□ 3.17
SMARCD3-203ENST00000392811 ABCA6Q8N139 1617 aa34.85■■■■□ 3.17
SMARCD3-203ENST00000392811 MYBBP1AQ9BQG0 1328 aaKnown RBP34.84■■■■□ 3.17
SMARCD3-203ENST00000392811 KIF1BO60333 1816 aa34.83■■■■□ 3.17
SMARCD3-203ENST00000392811 TMC1Q8TDI8 760 aa34.82■■■■□ 3.16
SMARCD3-203ENST00000392811 PNISRQ8TF01 805 aaKnown RBP34.81■■■■□ 3.16
SMARCD3-203ENST00000392811 PER1O15534 1290 aaPredicted RBP34.81■■■■□ 3.16
SMARCD3-203ENST00000392811 KIAA1210Q9ULL0 1709 aa34.8■■■■□ 3.16
SMARCD3-203ENST00000392811 SCAF11Q99590 1463 aaKnown RBP34.8■■■■□ 3.16
SMARCD3-203ENST00000392811 BRD4O60885 1362 aaPredicted RBP34.79■■■■□ 3.16
SMARCD3-203ENST00000392811 MYOM2P54296 1465 aa34.78■■■■□ 3.16
SMARCD3-203ENST00000392811 RAPGEF3O95398 923 aa34.77■■■■□ 3.16
SMARCD3-203ENST00000392811 MAP3K4Q9Y6R4 1608 aa34.77■■■■□ 3.16
SMARCD3-203ENST00000392811 PARD3Q8TEW0 1356 aa34.77■■■■□ 3.16
SMARCD3-203ENST00000392811 MROH2AA6NES4 1674 aa34.77■■■■□ 3.16
SMARCD3-203ENST00000392811 IFT172Q9UG01 1749 aa34.75■■■■□ 3.15
SMARCD3-203ENST00000392811 GGT6Q6P531 493 aa34.75■■■■□ 3.15
SMARCD3-203ENST00000392811 NPATQ14207 1427 aa34.73■■■■□ 3.15
SMARCD3-203ENST00000392811 PANK3Q9H999 370 aa34.72■■■■□ 3.15
SMARCD3-203ENST00000392811 CYB5RLQ6IPT4 315 aa34.71■■■■□ 3.15
SMARCD3-203ENST00000392811 WASHC2CQ9Y4E1 1318 aa34.7■■■■□ 3.15
SMARCD3-203ENST00000392811 ABCC3O15438 1527 aa34.7■■■■□ 3.14
SMARCD3-203ENST00000392811 DIP2CQ9Y2E4 1556 aa34.7■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms