RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PKD2Q13563 968 aa39.05■■■■□ 3.84
MSX1-201ENST00000382723 ABCA6Q8N139 1617 aa39.05■■■■□ 3.84
MSX1-201ENST00000382723 KIF3BO15066 747 aa39.04■■■■□ 3.84
MSX1-201ENST00000382723 FAM135AQ9P2D6 1515 aa39.02■■■■□ 3.84
MSX1-201ENST00000382723 COL17A1Q9UMD9 1497 aaPredicted RBP39.01■■■■□ 3.84
MSX1-201ENST00000382723 YEATS2Q9ULM3 1422 aa39.01■■■■□ 3.84
MSX1-201ENST00000382723 ZMYM4Q5VZL5 1548 aa39■■■■□ 3.83
MSX1-201ENST00000382723 MAGI2Q86UL8 1455 aa38.99■■■■□ 3.83
MSX1-201ENST00000382723 DIP2CQ9Y2E4 1556 aa38.98■■■■□ 3.83
MSX1-201ENST00000382723 EIF2AK4Q9P2K8 1649 aaKnown RBP38.96■■■■□ 3.83
MSX1-201ENST00000382723 ANKRD30BQ9BXX2 1392 aa38.95■■■■□ 3.83
MSX1-201ENST00000382723 IQGAP3Q86VI3 1631 aa38.93■■■■□ 3.82
MSX1-201ENST00000382723 DEPDC5O75140 1603 aa38.9■■■■□ 3.82
MSX1-201ENST00000382723 KANK1Q14678 1352 aa38.86■■■■□ 3.81
MSX1-201ENST00000382723 TONSLQ96HA7 1378 aa38.82■■■■□ 3.8
MSX1-201ENST00000382723 MROH1Q8NDA8 1641 aa38.81■■■■□ 3.8
MSX1-201ENST00000382723 PRDM15P57071 1507 aaPredicted RBP38.81■■■■□ 3.8
MSX1-201ENST00000382723 GGT6Q6P531 493 aa38.81■■■■□ 3.8
MSX1-201ENST00000382723 TIMELESSQ9UNS1 1208 aa38.81■■■■□ 3.8
MSX1-201ENST00000382723 ATP10AO60312 1499 aa38.8■■■■□ 3.8
MSX1-201ENST00000382723 RNF17Q9BXT8 1623 aaKnown RBP38.77■■■■□ 3.8
MSX1-201ENST00000382723 VWDEQ8N2E2 1590 aa38.77■■■■□ 3.8
MSX1-201ENST00000382723 BCORL1Q5H9F3 1711 aa38.73■■■■□ 3.79
MSX1-201ENST00000382723 RPRD2Q5VT52 1461 aaKnown RBP38.73■■■■□ 3.79
MSX1-201ENST00000382723 ARHGEF40Q8TER5 1519 aa38.69■■■■□ 3.78
MSX1-201ENST00000382723 TET3O43151 1660 aa38.66■■■■□ 3.78
MSX1-201ENST00000382723 REREQ9P2R6 1566 aa38.64■■■■□ 3.78
MSX1-201ENST00000382723 E9PCH4 1651 aa38.63■■■■□ 3.78
MSX1-201ENST00000382723 WASHC2CQ9Y4E1 1318 aa38.63■■■■□ 3.77
MSX1-201ENST00000382723 PLA2R1Q13018 1463 aa38.63■■■■□ 3.77
MSX1-201ENST00000382723 PPP1R15AO75807 674 aaPredicted RBP38.62■■■■□ 3.77
MSX1-201ENST00000382723 LMTK2Q8IWU2 1503 aa38.6■■■■□ 3.77
MSX1-201ENST00000382723 CEP152O94986 1710 aa38.6■■■■□ 3.77
MSX1-201ENST00000382723 L3MBTL2Q969R5 705 aa38.59■■■■□ 3.77
MSX1-201ENST00000382723 CCDC144AA2RUR9 1427 aa38.58■■■■□ 3.77
MSX1-201ENST00000382723 AGLP35573 1532 aa38.56■■■■□ 3.76
MSX1-201ENST00000382723 ABCC3O15438 1527 aa38.56■■■■□ 3.76
MSX1-201ENST00000382723 EFCAB6Q5THR3 1501 aa38.56■■■■□ 3.76
MSX1-201ENST00000382723 SIGLEC1Q9BZZ2 1709 aa38.54■■■■□ 3.76
MSX1-201ENST00000382723 MLECQ14165 292 aa38.49■■■■□ 3.75
MSX1-201ENST00000382723 PTPRTO14522 1441 aa38.48■■■■□ 3.75
MSX1-201ENST00000382723 ARID4BQ4LE39 1312 aaPredicted RBP38.44■■■■□ 3.74
MSX1-201ENST00000382723 NPATQ14207 1427 aa38.44■■■■□ 3.74
MSX1-201ENST00000382723 TRPM2O94759 1503 aa38.44■■■■□ 3.74
MSX1-201ENST00000382723 SPHKAPQ2M3C7 1700 aa38.44■■■■□ 3.74
MSX1-201ENST00000382723 CAMSAP1Q5T5Y3 1602 aa38.43■■■■□ 3.74
MSX1-201ENST00000382723 ZC3H13Q5T200 1668 aaKnown RBP38.42■■■■□ 3.74
MSX1-201ENST00000382723 PPP6R1Q9UPN7 881 aa38.37■■■■□ 3.73
MSX1-201ENST00000382723 RGL3Q3MIN7 710 aa38.36■■■■□ 3.73
MSX1-201ENST00000382723 CLTCL1P53675 1640 aa38.33■■■■□ 3.73
MSX1-201ENST00000382723 ARHGAP31Q2M1Z3 1444 aa38.32■■■■□ 3.72
MSX1-201ENST00000382723 ZNF316A6NFI3 1004 aaPredicted RBP38.31■■■■□ 3.72
MSX1-201ENST00000382723 UGGT1Q9NYU2 1555 aa38.3■■■■□ 3.72
MSX1-201ENST00000382723 DCAF11Q8TEB1 546 aa38.3■■■■□ 3.72
MSX1-201ENST00000382723 NBPF8Q3BBV2 869 aa38.28■■■■□ 3.72
MSX1-201ENST00000382723 KDM2AQ9Y2K7 1162 aa38.28■■■■□ 3.72
MSX1-201ENST00000382723 ZNF326Q5BKZ1 582 aaKnown RBP38.26■■■■□ 3.72
MSX1-201ENST00000382723 ESF1Q9H501 851 aaKnown RBP38.26■■■■□ 3.72
MSX1-201ENST00000382723 CLTCQ00610 1675 aaKnown RBP38.26■■■■□ 3.71
MSX1-201ENST00000382723 CNTLNQ9NXG0 1405 aa38.25■■■■□ 3.71
MSX1-201ENST00000382723 CFAP65Q6ZU64 1925 aaKnown RBP38.25■■■■□ 3.71
MSX1-201ENST00000382723 SPATA31E1Q6ZUB1 1445 aa38.24■■■■□ 3.71
MSX1-201ENST00000382723 NOS1P29475 1434 aa38.23■■■■□ 3.71
MSX1-201ENST00000382723 FBXO31Q5XUX0 539 aaPredicted RBP38.18■■■■□ 3.7
MSX1-201ENST00000382723 SYNMO15061 1565 aa38.15■■■■□ 3.7
MSX1-201ENST00000382723 CHGAP10645 457 aaKnown RBP38.14■■■■□ 3.7
MSX1-201ENST00000382723 UHRF1BP1Q6BDS2 1440 aa38.13■■■■□ 3.69
MSX1-201ENST00000382723 PREX1Q8TCU6 1659 aa38.13■■■■□ 3.69
MSX1-201ENST00000382723 ZMYM3Q14202 1370 aa38.1■■■■□ 3.69
MSX1-201ENST00000382723 ERVK-7P63135 1459 aa38.1■■■■□ 3.69
MSX1-201ENST00000382723 KIF1BO60333 1816 aa38.08■■■■□ 3.69
MSX1-201ENST00000382723 NEURL4Q96JN8 1562 aa38.05■■■■□ 3.68
MSX1-201ENST00000382723 IDI1Q13907 227 aa38.04■■■■□ 3.68
MSX1-201ENST00000382723 SLC52A1Q9NWF4 448 aa38.04■■■■□ 3.68
MSX1-201ENST00000382723 PIK3C2BO00750 1634 aa38.04■■■■□ 3.68
MSX1-201ENST00000382723 PRAG1Q86YV5 1406 aa38.04■■■■□ 3.68
MSX1-201ENST00000382723 HIRIP3Q9BW71 556 aaPredicted RBP38.04■■■■□ 3.68
MSX1-201ENST00000382723 ADGRB3O60242 1522 aa38.03■■■■□ 3.68
MSX1-201ENST00000382723 MROH2AA6NES4 1674 aa38.02■■■■□ 3.68
MSX1-201ENST00000382723 SPATA31D1Q6ZQQ2 1576 aa37.98■■■■□ 3.67
MSX1-201ENST00000382723 RALGAPBQ86X10 1494 aa37.97■■■■□ 3.67
MSX1-201ENST00000382723 EIF4G2P78344 907 aaKnown RBP eCLIP37.94■■■■□ 3.66
MSX1-201ENST00000382723 STAC3Q96MF2 364 aa37.93■■■■□ 3.66
MSX1-201ENST00000382723 HSPA5P11021 654 aaKnown RBP37.93■■■■□ 3.66
MSX1-201ENST00000382723 FER1L4A9Z1Z3 1794 aa37.9■■■■□ 3.66
MSX1-201ENST00000382723 CEBPAP49715 358 aaPredicted RBP37.9■■■■□ 3.66
MSX1-201ENST00000382723 ROCK2O75116 1388 aaKnown RBP37.89■■■■□ 3.66
MSX1-201ENST00000382723 CARD11Q9BXL7 1154 aa37.89■■■■□ 3.66
MSX1-201ENST00000382723 PLPPR3Q6T4P5 718 aa37.87■■■■□ 3.65
MSX1-201ENST00000382723 TRPM1Q7Z4N2 1603 aa37.87■■■■□ 3.65
MSX1-201ENST00000382723 MADDQ8WXG6 1647 aa37.86■■■■□ 3.65
MSX1-201ENST00000382723 STAG3Q9UJ98 1225 aa37.86■■■■□ 3.65
MSX1-201ENST00000382723 NBPF1Q3BBV0 1214 aa37.85■■■■□ 3.65
MSX1-201ENST00000382723 RPGRIP1LQ68CZ1 1315 aa37.85■■■■□ 3.65
MSX1-201ENST00000382723 ADGRF5Q8IZF2 1346 aa37.85■■■■□ 3.65
MSX1-201ENST00000382723 TNRQ92752 1358 aa37.85■■■■□ 3.65
MSX1-201ENST00000382723 MYOM2P54296 1465 aa37.84■■■■□ 3.65
MSX1-201ENST00000382723 IFT172Q9UG01 1749 aa37.83■■■■□ 3.65
MSX1-201ENST00000382723 TMEM131LA2VDJ0 1609 aa37.83■■■■□ 3.65
MSX1-201ENST00000382723 DIEXFQ68CQ4 756 aaKnown RBP37.81■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms