RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 FRMPD1Q5SYB0 1578 aa18.02■□□□□ 0.48
CIITA-202ENST00000381835 DHX29Q7Z478 1369 aaKnown RBP18.01■□□□□ 0.47
CIITA-202ENST00000381835 ABCA6Q8N139 1617 aa18■□□□□ 0.47
CIITA-202ENST00000381835 UNC13BO14795 1591 aa18■□□□□ 0.47
CIITA-202ENST00000381835 A2MP01023 1474 aa17.99■□□□□ 0.47
CIITA-202ENST00000381835 KIF3BO15066 747 aa17.99■□□□□ 0.47
CIITA-202ENST00000381835 KDM5DQ9BY66 1539 aa17.99■□□□□ 0.47
CIITA-202ENST00000381835 GTF3C3Q9Y5Q9 886 aa17.98■□□□□ 0.47
CIITA-202ENST00000381835 COL17A1Q9UMD9 1497 aaPredicted RBP17.98■□□□□ 0.47
CIITA-202ENST00000381835 PKD2Q13563 968 aa17.98■□□□□ 0.47
CIITA-202ENST00000381835 YEATS2Q9ULM3 1422 aa17.97■□□□□ 0.47
CIITA-202ENST00000381835 FAM135AQ9P2D6 1515 aa17.96■□□□□ 0.47
CIITA-202ENST00000381835 DIP2CQ9Y2E4 1556 aa17.96■□□□□ 0.47
CIITA-202ENST00000381835 ZMYM4Q5VZL5 1548 aa17.96■□□□□ 0.47
CIITA-202ENST00000381835 EIF2AK4Q9P2K8 1649 aaKnown RBP17.95■□□□□ 0.46
CIITA-202ENST00000381835 ZNF316A6NFI3 1004 aaPredicted RBP17.95■□□□□ 0.46
CIITA-202ENST00000381835 MAGI2Q86UL8 1455 aa17.94■□□□□ 0.46
CIITA-202ENST00000381835 IQGAP3Q86VI3 1631 aa17.93■□□□□ 0.46
CIITA-202ENST00000381835 DEPDC5O75140 1603 aa17.93■□□□□ 0.46
CIITA-202ENST00000381835 ANKRD30BQ9BXX2 1392 aa17.92■□□□□ 0.46
CIITA-202ENST00000381835 KANK1Q14678 1352 aa17.89■□□□□ 0.46
CIITA-202ENST00000381835 GGT6Q6P531 493 aa17.89■□□□□ 0.46
CIITA-202ENST00000381835 MROH1Q8NDA8 1641 aa17.88■□□□□ 0.45
CIITA-202ENST00000381835 PRDM15P57071 1507 aaPredicted RBP17.87■□□□□ 0.45
CIITA-202ENST00000381835 ATP10AO60312 1499 aa17.87■□□□□ 0.45
CIITA-202ENST00000381835 RNF17Q9BXT8 1623 aaKnown RBP17.86■□□□□ 0.45
CIITA-202ENST00000381835 TONSLQ96HA7 1378 aa17.86■□□□□ 0.45
CIITA-202ENST00000381835 BCORL1Q5H9F3 1711 aa17.85■□□□□ 0.45
CIITA-202ENST00000381835 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
CIITA-202ENST00000381835 TIMELESSQ9UNS1 1208 aa17.83■□□□□ 0.45
CIITA-202ENST00000381835 CEP152O94986 1710 aa17.83■□□□□ 0.44
CIITA-202ENST00000381835 ARHGEF40Q8TER5 1519 aa17.83■□□□□ 0.44
CIITA-202ENST00000381835 RPRD2Q5VT52 1461 aaKnown RBP17.82■□□□□ 0.44
CIITA-202ENST00000381835 TET3O43151 1660 aa17.82■□□□□ 0.44
CIITA-202ENST00000381835 E9PCH4 1651 aa17.82■□□□□ 0.44
CIITA-202ENST00000381835 WASHC2CQ9Y4E1 1318 aa17.8■□□□□ 0.44
CIITA-202ENST00000381835 REREQ9P2R6 1566 aa17.8■□□□□ 0.44
CIITA-202ENST00000381835 SIGLEC1Q9BZZ2 1709 aa17.79■□□□□ 0.44
CIITA-202ENST00000381835 CFAP65Q6ZU64 1925 aaKnown RBP17.77■□□□□ 0.44
CIITA-202ENST00000381835 PLA2R1Q13018 1463 aa17.77■□□□□ 0.44
CIITA-202ENST00000381835 PPP1R15AO75807 674 aaPredicted RBP17.76■□□□□ 0.43
CIITA-202ENST00000381835 CCDC144AA2RUR9 1427 aa17.76■□□□□ 0.43
CIITA-202ENST00000381835 EFCAB6Q5THR3 1501 aa17.76■□□□□ 0.43
CIITA-202ENST00000381835 AGLP35573 1532 aa17.76■□□□□ 0.43
CIITA-202ENST00000381835 LMTK2Q8IWU2 1503 aa17.76■□□□□ 0.43
CIITA-202ENST00000381835 L3MBTL2Q969R5 705 aa17.76■□□□□ 0.43
CIITA-202ENST00000381835 YTHDC1Q96MU7 727 aaKnown RBP17.76■□□□□ 0.43
CIITA-202ENST00000381835 ABCC3O15438 1527 aa17.75■□□□□ 0.43
CIITA-202ENST00000381835 MLECQ14165 292 aa17.75■□□□□ 0.43
CIITA-202ENST00000381835 SPHKAPQ2M3C7 1700 aa17.74■□□□□ 0.43
CIITA-202ENST00000381835 ARID4BQ4LE39 1312 aaPredicted RBP17.73■□□□□ 0.43
CIITA-202ENST00000381835 CAMSAP1Q5T5Y3 1602 aa17.72■□□□□ 0.43
CIITA-202ENST00000381835 MIER1Q8N108 512 aa17.71■□□□□ 0.43
CIITA-202ENST00000381835 ZC3H13Q5T200 1668 aaKnown RBP17.71■□□□□ 0.43
CIITA-202ENST00000381835 NPATQ14207 1427 aa17.7■□□□□ 0.42
CIITA-202ENST00000381835 PTPRTO14522 1441 aa17.7■□□□□ 0.42
CIITA-202ENST00000381835 TRPM2O94759 1503 aa17.69■□□□□ 0.42
CIITA-202ENST00000381835 RGL3Q3MIN7 710 aa17.67■□□□□ 0.42
CIITA-202ENST00000381835 CLTCL1P53675 1640 aa17.66■□□□□ 0.42
CIITA-202ENST00000381835 PPP6R1Q9UPN7 881 aa17.66■□□□□ 0.42
CIITA-202ENST00000381835 CLTCQ00610 1675 aaKnown RBP17.66■□□□□ 0.42
CIITA-202ENST00000381835 UGGT1Q9NYU2 1555 aa17.65■□□□□ 0.42
CIITA-202ENST00000381835 ESF1Q9H501 851 aaKnown RBP17.64■□□□□ 0.41
CIITA-202ENST00000381835 KDM2AQ9Y2K7 1162 aa17.64■□□□□ 0.41
CIITA-202ENST00000381835 ARHGAP31Q2M1Z3 1444 aa17.63■□□□□ 0.41
CIITA-202ENST00000381835 ZNF326Q5BKZ1 582 aaKnown RBP17.63■□□□□ 0.41
CIITA-202ENST00000381835 DCAF11Q8TEB1 546 aa17.63■□□□□ 0.41
CIITA-202ENST00000381835 NBPF8Q3BBV2 869 aa17.61■□□□□ 0.41
CIITA-202ENST00000381835 CNTLNQ9NXG0 1405 aa17.61■□□□□ 0.41
CIITA-202ENST00000381835 KIF1BO60333 1816 aa17.6■□□□□ 0.41
CIITA-202ENST00000381835 NOS1P29475 1434 aa17.6■□□□□ 0.41
CIITA-202ENST00000381835 SPATA31E1Q6ZUB1 1445 aa17.6■□□□□ 0.41
CIITA-202ENST00000381835 FBXO31Q5XUX0 539 aaPredicted RBP17.59■□□□□ 0.41
CIITA-202ENST00000381835 PREX1Q8TCU6 1659 aa17.59■□□□□ 0.41
CIITA-202ENST00000381835 CHGAP10645 457 aaKnown RBP17.58■□□□□ 0.4
CIITA-202ENST00000381835 SYNMO15061 1565 aa17.58■□□□□ 0.4
CIITA-202ENST00000381835 ZMYM3Q14202 1370 aa17.55■□□□□ 0.4
CIITA-202ENST00000381835 ERVK-7P63135 1459 aa17.54■□□□□ 0.4
CIITA-202ENST00000381835 MROH2AA6NES4 1674 aa17.54■□□□□ 0.4
CIITA-202ENST00000381835 IDI1Q13907 227 aa17.53■□□□□ 0.4
CIITA-202ENST00000381835 PIK3C2BO00750 1634 aa17.53■□□□□ 0.4
CIITA-202ENST00000381835 UHRF1BP1Q6BDS2 1440 aa17.53■□□□□ 0.4
CIITA-202ENST00000381835 HIRIP3Q9BW71 556 aaPredicted RBP17.52■□□□□ 0.4
CIITA-202ENST00000381835 SLC52A1Q9NWF4 448 aa17.52■□□□□ 0.39
CIITA-202ENST00000381835 FER1L4A9Z1Z3 1794 aa17.51■□□□□ 0.39
CIITA-202ENST00000381835 NEURL4Q96JN8 1562 aa17.5■□□□□ 0.39
CIITA-202ENST00000381835 PRAG1Q86YV5 1406 aa17.5■□□□□ 0.39
CIITA-202ENST00000381835 ADGRB3O60242 1522 aa17.5■□□□□ 0.39
CIITA-202ENST00000381835 SPATA31D1Q6ZQQ2 1576 aa17.5■□□□□ 0.39
CIITA-202ENST00000381835 PLPPR3Q6T4P5 718 aa17.49■□□□□ 0.39
CIITA-202ENST00000381835 CEBPAP49715 358 aaPredicted RBP17.48■□□□□ 0.39
CIITA-202ENST00000381835 MYO5BQ9ULV0 1848 aa17.47■□□□□ 0.39
CIITA-202ENST00000381835 RALGAPBQ86X10 1494 aa17.46■□□□□ 0.39
CIITA-202ENST00000381835 EIF4G2P78344 907 aaKnown RBP eCLIP17.46■□□□□ 0.38
CIITA-202ENST00000381835 STAG3Q9UJ98 1225 aa17.46■□□□□ 0.38
CIITA-202ENST00000381835 IFT172Q9UG01 1749 aa17.45■□□□□ 0.38
CIITA-202ENST00000381835 TRPM1Q7Z4N2 1603 aa17.45■□□□□ 0.38
CIITA-202ENST00000381835 STAC3Q96MF2 364 aa17.45■□□□□ 0.38
CIITA-202ENST00000381835 C3P01024 1663 aa17.44■□□□□ 0.38
CIITA-202ENST00000381835 HSPA5P11021 654 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms