RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MAST1Q9Y2H9 1570 aa30.5■■■□□ 2.47
TRIM54-202ENST00000380075 ABCA6Q8N139 1617 aa30.49■■■□□ 2.47
TRIM54-202ENST00000380075 DIP2CQ9Y2E4 1556 aa30.49■■■□□ 2.47
TRIM54-202ENST00000380075 ANKRD30BQ9BXX2 1392 aa30.49■■■□□ 2.47
TRIM54-202ENST00000380075 ATP10AO60312 1499 aa30.49■■■□□ 2.47
TRIM54-202ENST00000380075 RPRD2Q5VT52 1461 aaKnown RBP30.46■■■□□ 2.47
TRIM54-202ENST00000380075 DDX10Q13206 875 aaKnown RBP30.45■■■□□ 2.46
TRIM54-202ENST00000380075 PZPP20742 1482 aa30.41■■■□□ 2.46
TRIM54-202ENST00000380075 SLC4A1APQ9BWU0 796 aaKnown RBP30.41■■■□□ 2.46
TRIM54-202ENST00000380075 KIF15Q9NS87 1388 aa30.4■■■□□ 2.46
TRIM54-202ENST00000380075 A2MP01023 1474 aa30.4■■■□□ 2.46
TRIM54-202ENST00000380075 ARID4BQ4LE39 1312 aaPredicted RBP30.38■■■□□ 2.45
TRIM54-202ENST00000380075 DHX29Q7Z478 1369 aaKnown RBP30.38■■■□□ 2.45
TRIM54-202ENST00000380075 PLXNC1O60486 1568 aa30.38■■■□□ 2.45
TRIM54-202ENST00000380075 ANKRD50Q9ULJ7 1429 aa30.37■■■□□ 2.45
TRIM54-202ENST00000380075 SIGLEC1Q9BZZ2 1709 aa30.36■■■□□ 2.45
TRIM54-202ENST00000380075 REREQ9P2R6 1566 aa30.34■■■□□ 2.45
TRIM54-202ENST00000380075 L3MBTL2Q969R5 705 aa30.32■■■□□ 2.44
TRIM54-202ENST00000380075 HIRIP3Q9BW71 556 aaPredicted RBP30.32■■■□□ 2.44
TRIM54-202ENST00000380075 FOXD1Q16676 465 aa30.31■■■□□ 2.44
TRIM54-202ENST00000380075 DUOX2Q9NRD8 1548 aa30.3■■■□□ 2.44
TRIM54-202ENST00000380075 KDM5DQ9BY66 1539 aa30.28■■■□□ 2.44
TRIM54-202ENST00000380075 MLECQ14165 292 aa30.28■■■□□ 2.44
TRIM54-202ENST00000380075 KIF3BO15066 747 aa30.28■■■□□ 2.44
TRIM54-202ENST00000380075 CCER2I3L3R5 266 aa30.27■■■□□ 2.44
TRIM54-202ENST00000380075 AGLP35573 1532 aa30.27■■■□□ 2.44
TRIM54-202ENST00000380075 ANP32CO43423 234 aa30.26■■■□□ 2.43
TRIM54-202ENST00000380075 EIF4G2P78344 907 aaKnown RBP eCLIP30.25■■■□□ 2.43
TRIM54-202ENST00000380075 ERBINQ96RT1 1412 aa30.23■■■□□ 2.43
TRIM54-202ENST00000380075 GGT6Q6P531 493 aa30.22■■■□□ 2.43
TRIM54-202ENST00000380075 HSPA5P11021 654 aaKnown RBP30.21■■■□□ 2.43
TRIM54-202ENST00000380075 PKD2Q13563 968 aa30.16■■■□□ 2.42
TRIM54-202ENST00000380075 NUP155O75694 1391 aa30.15■■■□□ 2.42
TRIM54-202ENST00000380075 BCORL1Q5H9F3 1711 aa30.14■■■□□ 2.42
TRIM54-202ENST00000380075 EIF2AK4Q9P2K8 1649 aaKnown RBP30.13■■■□□ 2.41
TRIM54-202ENST00000380075 KDM4FA0A1W2PPD8 638 aa30.13■■■□□ 2.41
TRIM54-202ENST00000380075 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.11■■■□□ 2.41
TRIM54-202ENST00000380075 NBPF8Q3BBV2 869 aa30.1■■■□□ 2.41
TRIM54-202ENST00000380075 WASHC2AQ641Q2 1341 aa30.09■■■□□ 2.41
TRIM54-202ENST00000380075 RNF17Q9BXT8 1623 aaKnown RBP30.06■■■□□ 2.4
TRIM54-202ENST00000380075 ADAMTSL3P82987 1691 aa30.06■■■□□ 2.4
TRIM54-202ENST00000380075 SPATA31E1Q6ZUB1 1445 aa30.05■■■□□ 2.4
TRIM54-202ENST00000380075 PPP6R1Q9UPN7 881 aa30.04■■■□□ 2.4
TRIM54-202ENST00000380075 MROH1Q8NDA8 1641 aa30.04■■■□□ 2.4
TRIM54-202ENST00000380075 ESF1Q9H501 851 aaKnown RBP30.04■■■□□ 2.4
TRIM54-202ENST00000380075 WASHC2CQ9Y4E1 1318 aa30.04■■■□□ 2.4
TRIM54-202ENST00000380075 MADDQ8WXG6 1647 aa30.03■■■□□ 2.4
TRIM54-202ENST00000380075 PELP1Q8IZL8 1130 aaKnown RBP30.02■■■□□ 2.4
TRIM54-202ENST00000380075 UHRF1BP1Q6BDS2 1440 aa30.01■■■□□ 2.39
TRIM54-202ENST00000380075 CNTLNQ9NXG0 1405 aa30.01■■■□□ 2.39
TRIM54-202ENST00000380075 DEPDC5O75140 1603 aa30.01■■■□□ 2.39
TRIM54-202ENST00000380075 UNC13BO14795 1591 aa30■■■□□ 2.39
TRIM54-202ENST00000380075 CCDC7Q96M83 1385 aa30■■■□□ 2.39
TRIM54-202ENST00000380075 PRDM15P57071 1507 aaPredicted RBP29.99■■■□□ 2.39
TRIM54-202ENST00000380075 POLR1AO95602 1720 aaPredicted RBP29.99■■■□□ 2.39
TRIM54-202ENST00000380075 FAM135AQ9P2D6 1515 aa29.99■■■□□ 2.39
TRIM54-202ENST00000380075 KANK1Q14678 1352 aa29.97■■■□□ 2.39
TRIM54-202ENST00000380075 FER1L4A9Z1Z3 1794 aa29.96■■■□□ 2.39
TRIM54-202ENST00000380075 PLPPR3Q6T4P5 718 aa29.94■■■□□ 2.38
TRIM54-202ENST00000380075 ABCC3O15438 1527 aa29.93■■■□□ 2.38
TRIM54-202ENST00000380075 RIMS1Q86UR5 1692 aaKnown RBP29.93■■■□□ 2.38
TRIM54-202ENST00000380075 CEBPAP49715 358 aaPredicted RBP29.93■■■□□ 2.38
TRIM54-202ENST00000380075 VWDEQ8N2E2 1590 aa29.92■■■□□ 2.38
TRIM54-202ENST00000380075 CLTCQ00610 1675 aaKnown RBP29.92■■■□□ 2.38
TRIM54-202ENST00000380075 ZMYM3Q14202 1370 aa29.92■■■□□ 2.38
TRIM54-202ENST00000380075 PTPRMP28827 1452 aa29.91■■■□□ 2.38
TRIM54-202ENST00000380075 RALGAPBQ86X10 1494 aa29.91■■■□□ 2.38
TRIM54-202ENST00000380075 IQGAP3Q86VI3 1631 aa29.87■■■□□ 2.37
TRIM54-202ENST00000380075 CEP152O94986 1710 aa29.87■■■□□ 2.37
TRIM54-202ENST00000380075 C11orf95C9JLR9 678 aaPredicted RBP29.85■■■□□ 2.37
TRIM54-202ENST00000380075 LMTK2Q8IWU2 1503 aa29.85■■■□□ 2.37
TRIM54-202ENST00000380075 ZC3H13Q5T200 1668 aaKnown RBP29.84■■■□□ 2.37
TRIM54-202ENST00000380075 USP47Q96K76 1375 aa29.84■■■□□ 2.37
TRIM54-202ENST00000380075 KIF7Q2M1P5 1343 aa29.83■■■□□ 2.37
TRIM54-202ENST00000380075 MROH2AA6NES4 1674 aa29.81■■■□□ 2.36
TRIM54-202ENST00000380075 FBXO31Q5XUX0 539 aaPredicted RBP29.81■■■□□ 2.36
TRIM54-202ENST00000380075 CCDC144AA2RUR9 1427 aa29.8■■■□□ 2.36
TRIM54-202ENST00000380075 CAMSAP1Q5T5Y3 1602 aa29.79■■■□□ 2.36
TRIM54-202ENST00000380075 C3P01024 1663 aa29.79■■■□□ 2.36
TRIM54-202ENST00000380075 NPATQ14207 1427 aa29.78■■■□□ 2.36
TRIM54-202ENST00000380075 ARHGAP31Q2M1Z3 1444 aa29.77■■■□□ 2.36
TRIM54-202ENST00000380075 EFCAB6Q5THR3 1501 aa29.76■■■□□ 2.35
TRIM54-202ENST00000380075 SUPT16HQ9Y5B9 1047 aaKnown RBP29.76■■■□□ 2.35
TRIM54-202ENST00000380075 ZNF326Q5BKZ1 582 aaKnown RBP29.75■■■□□ 2.35
TRIM54-202ENST00000380075 TET3O43151 1660 aa29.75■■■□□ 2.35
TRIM54-202ENST00000380075 PRKRIP1Q9H875 184 aaPredicted RBP29.72■■■□□ 2.35
TRIM54-202ENST00000380075 PLA2R1Q13018 1463 aa29.71■■■□□ 2.35
TRIM54-202ENST00000380075 ROCK2O75116 1388 aaKnown RBP29.69■■■□□ 2.34
TRIM54-202ENST00000380075 CARD11Q9BXL7 1154 aa29.69■■■□□ 2.34
TRIM54-202ENST00000380075 DCAF11Q8TEB1 546 aa29.68■■■□□ 2.34
TRIM54-202ENST00000380075 E9PCH4 1651 aa29.68■■■□□ 2.34
TRIM54-202ENST00000380075 ERVK-7P63135 1459 aa29.67■■■□□ 2.34
TRIM54-202ENST00000380075 PRAG1Q86YV5 1406 aa29.65■■■□□ 2.34
TRIM54-202ENST00000380075 CFAP65Q6ZU64 1925 aaKnown RBP29.65■■■□□ 2.34
TRIM54-202ENST00000380075 AEBP2Q6ZN18 517 aaPredicted RBP29.64■■■□□ 2.34
TRIM54-202ENST00000380075 TNRQ92752 1358 aa29.64■■■□□ 2.34
TRIM54-202ENST00000380075 SPATA31D1Q6ZQQ2 1576 aa29.63■■■□□ 2.33
TRIM54-202ENST00000380075 KDM2AQ9Y2K7 1162 aa29.63■■■□□ 2.33
TRIM54-202ENST00000380075 TRPM1Q7Z4N2 1603 aa29.62■■■□□ 2.33
TRIM54-202ENST00000380075 NOS1P29475 1434 aa29.62■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms