RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 NUP155O75694 1391 aa20.73■□□□□ 0.91
CKAP4-201ENST00000378026 RGL3Q3MIN7 710 aa20.72■□□□□ 0.91
CKAP4-201ENST00000378026 ARXQ96QS3 562 aa20.71■□□□□ 0.91
CKAP4-201ENST00000378026 RALGAPBQ86X10 1494 aa20.71■□□□□ 0.91
CKAP4-201ENST00000378026 KDM2BQ8NHM5 1336 aa20.7■□□□□ 0.9
CKAP4-201ENST00000378026 CENPQQ7L2Z9 268 aaPredicted RBP20.7■□□□□ 0.9
CKAP4-201ENST00000378026 PARD3Q8TEW0 1356 aa20.7■□□□□ 0.9
CKAP4-201ENST00000378026 NBPF1Q3BBV0 1214 aa20.68■□□□□ 0.9
CKAP4-201ENST00000378026 PER1O15534 1290 aaPredicted RBP20.68■□□□□ 0.9
CKAP4-201ENST00000378026 WDR62O43379 1518 aa20.67■□□□□ 0.9
CKAP4-201ENST00000378026 ADAMTS8Q9UP79 889 aa20.67■□□□□ 0.9
CKAP4-201ENST00000378026 PANK3Q9H999 370 aa20.67■□□□□ 0.9
CKAP4-201ENST00000378026 KIF21AQ7Z4S6 1674 aa20.65■□□□□ 0.9
CKAP4-201ENST00000378026 POGKQ9P215 609 aa20.65■□□□□ 0.9
CKAP4-201ENST00000378026 UHRF1BP1Q6BDS2 1440 aa20.65■□□□□ 0.9
CKAP4-201ENST00000378026 PRG4Q92954 1404 aaPredicted RBP20.65■□□□□ 0.9
CKAP4-201ENST00000378026 SLKQ9H2G2 1235 aaPredicted RBP20.64■□□□□ 0.89
CKAP4-201ENST00000378026 ANKRD50Q9ULJ7 1429 aa20.63■□□□□ 0.89
CKAP4-201ENST00000378026 CAMSAP2Q08AD1 1489 aa20.63■□□□□ 0.89
CKAP4-201ENST00000378026 FAM43AQ8N2R8 423 aa20.63■□□□□ 0.89
CKAP4-201ENST00000378026 IQGAP2Q13576 1575 aa20.63■□□□□ 0.89
CKAP4-201ENST00000378026 ANKRD30AQ9BXX3 1397 aa20.62■□□□□ 0.89
CKAP4-201ENST00000378026 KIAA0586Q9BVV6 1533 aa20.62■□□□□ 0.89
CKAP4-201ENST00000378026 RSPH6AQ9H0K4 717 aa20.62■□□□□ 0.89
CKAP4-201ENST00000378026 DUSP27Q5VZP5 1158 aa20.59■□□□□ 0.89
CKAP4-201ENST00000378026 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
CKAP4-201ENST00000378026 WDR43Q15061 677 aaKnown RBP eCLIP20.58■□□□□ 0.89
CKAP4-201ENST00000378026 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.57■□□□□ 0.88
CKAP4-201ENST00000378026 PLEKHH1Q9ULM0 1364 aa20.57■□□□□ 0.88
CKAP4-201ENST00000378026 DISP3Q9P2K9 1392 aa20.56■□□□□ 0.88
CKAP4-201ENST00000378026 BLMP54132 1417 aaPredicted RBP20.56■□□□□ 0.88
CKAP4-201ENST00000378026 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
CKAP4-201ENST00000378026 CCDC146Q8IYE0 955 aa20.55■□□□□ 0.88
CKAP4-201ENST00000378026 SEC24BO95487 1268 aa20.55■□□□□ 0.88
CKAP4-201ENST00000378026 GOLGA2Q08379 1002 aa20.55■□□□□ 0.88
CKAP4-201ENST00000378026 RRAGDQ9NQL2 400 aaPredicted RBP20.55■□□□□ 0.88
CKAP4-201ENST00000378026 BCAR3O75815 825 aa20.53■□□□□ 0.88
CKAP4-201ENST00000378026 E9PCH4 1651 aa20.52■□□□□ 0.88
CKAP4-201ENST00000378026 TSPY4P0CV99 314 aa20.52■□□□□ 0.88
CKAP4-201ENST00000378026 TSPY10P0CW01 314 aa20.52■□□□□ 0.88
CKAP4-201ENST00000378026 IGHDP01880 384 aa20.51■□□□□ 0.87
CKAP4-201ENST00000378026 GPATCH8Q9UKJ3 1502 aaKnown RBP20.51■□□□□ 0.87
CKAP4-201ENST00000378026 SPRYD3Q8NCJ5 442 aa20.51■□□□□ 0.87
CKAP4-201ENST00000378026 ZMYM4Q5VZL5 1548 aa20.51■□□□□ 0.87
CKAP4-201ENST00000378026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.5■□□□□ 0.87
CKAP4-201ENST00000378026 TESK2Q96S53 571 aa20.49■□□□□ 0.87
CKAP4-201ENST00000378026 ARHGEF12Q9NZN5 1544 aa20.49■□□□□ 0.87
CKAP4-201ENST00000378026 HNRNPMP52272 730 aaKnown RBP eCLIP20.49■□□□□ 0.87
CKAP4-201ENST00000378026 SPINK5Q9NQ38 1064 aaPredicted RBP20.49■□□□□ 0.87
CKAP4-201ENST00000378026 TROQ12816 1431 aaPredicted RBP20.48■□□□□ 0.87
CKAP4-201ENST00000378026 USP19O94966 1318 aa20.48■□□□□ 0.87
CKAP4-201ENST00000378026 GZF1Q9H116 711 aaPredicted RBP20.47■□□□□ 0.87
CKAP4-201ENST00000378026 TMF1P82094 1093 aa20.47■□□□□ 0.87
CKAP4-201ENST00000378026 PPP2R1AP30153 589 aa20.47■□□□□ 0.87
CKAP4-201ENST00000378026 KNSTRNQ9Y448 316 aa20.46■□□□□ 0.87
CKAP4-201ENST00000378026 BECN1Q14457 450 aa20.46■□□□□ 0.87
CKAP4-201ENST00000378026 ADGRL2O95490 1459 aa20.45■□□□□ 0.86
CKAP4-201ENST00000378026 ADGBQ8N7X0 1667 aa20.45■□□□□ 0.86
CKAP4-201ENST00000378026 SLFN5Q08AF3 891 aa20.45■□□□□ 0.86
CKAP4-201ENST00000378026 DNAJC5BQ9UF47 199 aa20.44■□□□□ 0.86
CKAP4-201ENST00000378026 ZNF608Q9ULD9 1512 aaPredicted RBP20.44■□□□□ 0.86
CKAP4-201ENST00000378026 PRAG1Q86YV5 1406 aa20.44■□□□□ 0.86
CKAP4-201ENST00000378026 CANXP27824 592 aaKnown RBP20.44■□□□□ 0.86
CKAP4-201ENST00000378026 NAP1L5Q96NT1 182 aaPredicted RBP20.44■□□□□ 0.86
CKAP4-201ENST00000378026 C9orf84Q5VXU9 1444 aa20.43■□□□□ 0.86
CKAP4-201ENST00000378026 APAF1O14727 1248 aa20.43■□□□□ 0.86
CKAP4-201ENST00000378026 PLEKHH2Q8IVE3 1493 aa20.43■□□□□ 0.86
CKAP4-201ENST00000378026 COG6Q9Y2V7 657 aa20.42■□□□□ 0.86
CKAP4-201ENST00000378026 CCDC144AA2RUR9 1427 aa20.42■□□□□ 0.86
CKAP4-201ENST00000378026 ERBINQ96RT1 1412 aa20.42■□□□□ 0.86
CKAP4-201ENST00000378026 PANK1Q8TE04 598 aa20.41■□□□□ 0.86
CKAP4-201ENST00000378026 DISP1Q96F81 1524 aa20.41■□□□□ 0.86
CKAP4-201ENST00000378026 L1TD1Q5T7N2 865 aaKnown RBP20.41■□□□□ 0.86
CKAP4-201ENST00000378026 RAPGEF6Q8TEU7 1601 aa20.4■□□□□ 0.86
CKAP4-201ENST00000378026 PLB1Q6P1J6 1458 aa20.4■□□□□ 0.86
CKAP4-201ENST00000378026 COL17A1Q9UMD9 1497 aaPredicted RBP20.4■□□□□ 0.86
CKAP4-201ENST00000378026 ZNF521Q96K83 1311 aa20.4■□□□□ 0.86
CKAP4-201ENST00000378026 PANK2Q9BZ23 570 aa20.38■□□□□ 0.85
CKAP4-201ENST00000378026 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
CKAP4-201ENST00000378026 TARBP1Q13395 1621 aaKnown RBP20.38■□□□□ 0.85
CKAP4-201ENST00000378026 PLEKHD1A6NEE1 506 aa20.37■□□□□ 0.85
CKAP4-201ENST00000378026 CEP170Q5SW79 1584 aa20.37■□□□□ 0.85
CKAP4-201ENST00000378026 KIAA0556O60303 1618 aa20.37■□□□□ 0.85
CKAP4-201ENST00000378026 XRCC6P12956 609 aaKnown RBP eCLIP20.36■□□□□ 0.85
CKAP4-201ENST00000378026 INSRP06213 1382 aa20.36■□□□□ 0.85
CKAP4-201ENST00000378026 PBRM1Q86U86 1689 aa20.36■□□□□ 0.85
CKAP4-201ENST00000378026 KDM5DQ9BY66 1539 aa20.36■□□□□ 0.85
CKAP4-201ENST00000378026 ADAMTS12P58397 1594 aa20.35■□□□□ 0.85
CKAP4-201ENST00000378026 GOLGA6L3A6NEY3 463 aa20.35■□□□□ 0.85
CKAP4-201ENST00000378026 FBLN2P98095 1184 aa20.34■□□□□ 0.85
CKAP4-201ENST00000378026 ITSN2Q9NZM3 1697 aa20.34■□□□□ 0.85
CKAP4-201ENST00000378026 CLUAP1Q96AJ1 413 aa20.34■□□□□ 0.85
CKAP4-201ENST00000378026 PNNQ9H307 717 aaKnown RBP20.34■□□□□ 0.85
CKAP4-201ENST00000378026 UPF2Q9HAU5 1272 aaKnown RBP20.34■□□□□ 0.85
CKAP4-201ENST00000378026 NEUROD2Q15784 382 aa20.33■□□□□ 0.85
CKAP4-201ENST00000378026 TBC1D2Q9BYX2 928 aa20.33■□□□□ 0.85
CKAP4-201ENST00000378026 TRPM1Q7Z4N2 1603 aa20.33■□□□□ 0.85
CKAP4-201ENST00000378026 EIF3AQ14152 1382 aaKnown RBP20.33■□□□□ 0.85
CKAP4-201ENST00000378026 CROCC2H7BZ55 1655 aa20.33■□□□□ 0.84
CKAP4-201ENST00000378026 ANTXR1Q9H6X2 564 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms