RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 KDM5DQ9BY66 1539 aa33.07■■■□□ 2.88
VSX1-201ENST00000376707 WASHC2CQ9Y4E1 1318 aa33.06■■■□□ 2.88
VSX1-201ENST00000376707 ZNF142P52746 1687 aaPredicted RBP33.06■■■□□ 2.88
VSX1-201ENST00000376707 FAM135AQ9P2D6 1515 aa33.06■■■□□ 2.88
VSX1-201ENST00000376707 MAST1Q9Y2H9 1570 aa33.04■■■□□ 2.88
VSX1-201ENST00000376707 NCKAP5LQ9HCH0 1330 aa33.02■■■□□ 2.88
VSX1-201ENST00000376707 PLA2R1Q13018 1463 aa33■■■□□ 2.87
VSX1-201ENST00000376707 PKD2Q13563 968 aa32.99■■■□□ 2.87
VSX1-201ENST00000376707 FBXO31Q5XUX0 539 aaPredicted RBP32.99■■■□□ 2.87
VSX1-201ENST00000376707 PZPP20742 1482 aa32.99■■■□□ 2.87
VSX1-201ENST00000376707 TNRQ92752 1358 aa32.98■■■□□ 2.87
VSX1-201ENST00000376707 A2ML1A8K2U0 1454 aa32.98■■■□□ 2.87
VSX1-201ENST00000376707 TCOF1Q13428 1488 aaKnown RBP32.93■■■□□ 2.86
VSX1-201ENST00000376707 LTBP4Q8N2S1 1624 aa32.92■■■□□ 2.86
VSX1-201ENST00000376707 RNF17Q9BXT8 1623 aaKnown RBP32.91■■■□□ 2.86
VSX1-201ENST00000376707 DNMT1P26358 1616 aaKnown RBP32.9■■■□□ 2.86
VSX1-201ENST00000376707 EIF2AK4Q9P2K8 1649 aaKnown RBP32.89■■■□□ 2.86
VSX1-201ENST00000376707 PTPN23Q9H3S7 1636 aa32.88■■■□□ 2.85
VSX1-201ENST00000376707 DUOX2Q9NRD8 1548 aa32.87■■■□□ 2.85
VSX1-201ENST00000376707 ABCC3O15438 1527 aa32.86■■■□□ 2.85
VSX1-201ENST00000376707 ABCC5O15440 1437 aa32.85■■■□□ 2.85
VSX1-201ENST00000376707 SHANK2Q9UPX8 1470 aa32.85■■■□□ 2.85
VSX1-201ENST00000376707 ZNF335Q9H4Z2 1342 aaPredicted RBP32.84■■■□□ 2.85
VSX1-201ENST00000376707 FGD6Q6ZV73 1430 aa32.84■■■□□ 2.85
VSX1-201ENST00000376707 KIF15Q9NS87 1388 aa32.83■■■□□ 2.85
VSX1-201ENST00000376707 ZC3H13Q5T200 1668 aaKnown RBP32.83■■■□□ 2.85
VSX1-201ENST00000376707 IQSEC2Q5JU85 1478 aa32.82■■■□□ 2.84
VSX1-201ENST00000376707 NLRP1Q9C000 1473 aa32.82■■■□□ 2.84
VSX1-201ENST00000376707 RRP7BPQ9NSQ0 103 aa32.8■■■□□ 2.84
VSX1-201ENST00000376707 CROCC2H7BZ55 1655 aa32.79■■■□□ 2.84
VSX1-201ENST00000376707 DAPK1P53355 1430 aa32.79■■■□□ 2.84
VSX1-201ENST00000376707 MROH1Q8NDA8 1641 aa32.79■■■□□ 2.84
VSX1-201ENST00000376707 THEMISQ8N1K5 641 aaPredicted RBP32.78■■■□□ 2.84
VSX1-201ENST00000376707 ERBINQ96RT1 1412 aa32.76■■■□□ 2.83
VSX1-201ENST00000376707 UGGT1Q9NYU2 1555 aa32.75■■■□□ 2.83
VSX1-201ENST00000376707 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.75■■■□□ 2.83
VSX1-201ENST00000376707 ANKLE2Q86XL3 938 aa32.73■■■□□ 2.83
VSX1-201ENST00000376707 SPATA31D1Q6ZQQ2 1576 aa32.73■■■□□ 2.83
VSX1-201ENST00000376707 ERVK-7P63135 1459 aa32.72■■■□□ 2.83
VSX1-201ENST00000376707 POLR1AO95602 1720 aaPredicted RBP32.71■■■□□ 2.83
VSX1-201ENST00000376707 CHIC2Q9UKJ5 165 aa32.7■■■□□ 2.83
VSX1-201ENST00000376707 CEP152O94986 1710 aa32.7■■■□□ 2.83
VSX1-201ENST00000376707 NEURL4Q96JN8 1562 aa32.7■■■□□ 2.82
VSX1-201ENST00000376707 PRDM15P57071 1507 aaPredicted RBP32.69■■■□□ 2.82
VSX1-201ENST00000376707 ANKRD30AQ9BXX3 1397 aa32.69■■■□□ 2.82
VSX1-201ENST00000376707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.67■■■□□ 2.82
VSX1-201ENST00000376707 KANK1Q14678 1352 aa32.63■■■□□ 2.81
VSX1-201ENST00000376707 ARHGAP31Q2M1Z3 1444 aa32.62■■■□□ 2.81
VSX1-201ENST00000376707 UBAP1LF5GYI3 381 aa32.62■■■□□ 2.81
VSX1-201ENST00000376707 FAM50AQ14320 339 aaKnown RBP32.62■■■□□ 2.81
VSX1-201ENST00000376707 NPHP4O75161 1426 aaPredicted RBP32.61■■■□□ 2.81
VSX1-201ENST00000376707 DEPDC5O75140 1603 aa32.59■■■□□ 2.81
VSX1-201ENST00000376707 MED14O60244 1454 aa32.59■■■□□ 2.81
VSX1-201ENST00000376707 CPS1P31327 1500 aa32.56■■■□□ 2.8
VSX1-201ENST00000376707 ADGRL2O95490 1459 aa32.54■■■□□ 2.8
VSX1-201ENST00000376707 CFAP65Q6ZU64 1925 aaKnown RBP32.53■■■□□ 2.8
VSX1-201ENST00000376707 UBR1Q8IWV7 1749 aa32.51■■■□□ 2.79
VSX1-201ENST00000376707 IQGAP1P46940 1657 aa32.5■■■□□ 2.79
VSX1-201ENST00000376707 VWDEQ8N2E2 1590 aa32.49■■■□□ 2.79
VSX1-201ENST00000376707 LMTK2Q8IWU2 1503 aa32.49■■■□□ 2.79
VSX1-201ENST00000376707 DISP3Q9P2K9 1392 aa32.45■■■□□ 2.79
VSX1-201ENST00000376707 SCAF11Q99590 1463 aaKnown RBP32.45■■■□□ 2.79
VSX1-201ENST00000376707 ANKRD50Q9ULJ7 1429 aa32.43■■■□□ 2.78
VSX1-201ENST00000376707 STAG3Q9UJ98 1225 aa32.43■■■□□ 2.78
VSX1-201ENST00000376707 TXNDC2Q86VQ3 553 aa32.42■■■□□ 2.78
VSX1-201ENST00000376707 ARHGAP23Q9P227 1491 aa32.42■■■□□ 2.78
VSX1-201ENST00000376707 SLIT1O75093 1534 aa32.41■■■□□ 2.78
VSX1-201ENST00000376707 TOM1O60784 492 aa32.4■■■□□ 2.78
VSX1-201ENST00000376707 LTKP29376 864 aa32.4■■■□□ 2.78
VSX1-201ENST00000376707 EID1Q9Y6B2 187 aa32.4■■■□□ 2.78
VSX1-201ENST00000376707 PIK3C2BO00750 1634 aa32.4■■■□□ 2.78
VSX1-201ENST00000376707 SCAF1Q9H7N4 1312 aaKnown RBP32.39■■■□□ 2.78
VSX1-201ENST00000376707 EFCAB6Q5THR3 1501 aa32.39■■■□□ 2.78
VSX1-201ENST00000376707 IDI1Q13907 227 aa32.37■■■□□ 2.77
VSX1-201ENST00000376707 PIP4K2BP78356 416 aa32.36■■■□□ 2.77
VSX1-201ENST00000376707 TMEM2Q9UHN6 1383 aa32.35■■■□□ 2.77
VSX1-201ENST00000376707 NOS1P29475 1434 aa32.34■■■□□ 2.77
VSX1-201ENST00000376707 SYNMO15061 1565 aa32.33■■■□□ 2.77
VSX1-201ENST00000376707 KDM5AP29375 1690 aaKnown RBP32.29■■■□□ 2.76
VSX1-201ENST00000376707 LRRC7Q96NW7 1537 aa32.29■■■□□ 2.76
VSX1-201ENST00000376707 RPRD2Q5VT52 1461 aaKnown RBP32.29■■■□□ 2.76
VSX1-201ENST00000376707 STRCP1A6NGW2 1772 aa32.28■■■□□ 2.76
VSX1-201ENST00000376707 PPARGC1BQ86YN6 1023 aaKnown RBP32.28■■■□□ 2.76
VSX1-201ENST00000376707 SLC52A1Q9NWF4 448 aa32.28■■■□□ 2.76
VSX1-201ENST00000376707 ROCK1Q13464 1354 aa32.28■■■□□ 2.76
VSX1-201ENST00000376707 HSPA1LP34931 641 aa32.24■■■□□ 2.75
VSX1-201ENST00000376707 ITGAEP38570 1179 aa32.24■■■□□ 2.75
VSX1-201ENST00000376707 ADGRB3O60242 1522 aa32.24■■■□□ 2.75
VSX1-201ENST00000376707 TET3O43151 1660 aa32.23■■■□□ 2.75
VSX1-201ENST00000376707 UNC13BO14795 1591 aa32.22■■■□□ 2.75
VSX1-201ENST00000376707 ILDR2Q71H61 639 aa32.2■■■□□ 2.75
VSX1-201ENST00000376707 ALKQ9UM73 1620 aa32.18■■■□□ 2.74
VSX1-201ENST00000376707 GCC2Q8IWJ2 1684 aa32.15■■■□□ 2.74
VSX1-201ENST00000376707 SLC26A8Q96RN1 970 aa32.14■■■□□ 2.74
VSX1-201ENST00000376707 BCANQ96GW7 911 aa32.12■■■□□ 2.73
VSX1-201ENST00000376707 NUP155O75694 1391 aa32.1■■■□□ 2.73
VSX1-201ENST00000376707 IQGAP3Q86VI3 1631 aa32.09■■■□□ 2.73
VSX1-201ENST00000376707 KCNA6P17658 529 aa32.09■■■□□ 2.73
VSX1-201ENST00000376707 HDGFP51858 240 aaKnown RBP32.08■■■□□ 2.73
VSX1-201ENST00000376707 PPP1R15AO75807 674 aaPredicted RBP32.07■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms