RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 FANCAO15360 1455 aa19.14■□□□□ 0.66
CLCNKA-202ENST00000375692 KIAA1107Q9UPP5 1409 aa19.14■□□□□ 0.65
CLCNKA-202ENST00000375692 RSPH4AQ5TD94 716 aa19.14■□□□□ 0.65
CLCNKA-202ENST00000375692 DHX29Q7Z478 1369 aaKnown RBP19.14■□□□□ 0.65
CLCNKA-202ENST00000375692 CROCC2H7BZ55 1655 aa19.14■□□□□ 0.65
CLCNKA-202ENST00000375692 CD109Q6YHK3 1445 aa19.13■□□□□ 0.65
CLCNKA-202ENST00000375692 ARHGEF5Q12774 1597 aa19.13■□□□□ 0.65
CLCNKA-202ENST00000375692 ADGRL2O95490 1459 aa19.12■□□□□ 0.65
CLCNKA-202ENST00000375692 SMG6Q86US8 1419 aaKnown RBP19.12■□□□□ 0.65
CLCNKA-202ENST00000375692 PAK3O75914 559 aaPredicted RBP19.12■□□□□ 0.65
CLCNKA-202ENST00000375692 KIF15Q9NS87 1388 aa19.11■□□□□ 0.65
CLCNKA-202ENST00000375692 NUDCQ9Y266 331 aa19.11■□□□□ 0.65
CLCNKA-202ENST00000375692 ANKRD50Q9ULJ7 1429 aa19.1■□□□□ 0.65
CLCNKA-202ENST00000375692 SHANK2Q9UPX8 1470 aa19.1■□□□□ 0.65
CLCNKA-202ENST00000375692 CCDC136Q96JN2 1154 aa19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 NOP58Q9Y2X3 529 aaKnown RBP19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 PLEKHH2Q8IVE3 1493 aa19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 ABCC1P33527 1531 aa19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 FAM69CQ0P6D2 419 aa19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 SCAPERQ9BY12 1400 aa19.09■□□□□ 0.65
CLCNKA-202ENST00000375692 USP47Q96K76 1375 aa19.08■□□□□ 0.65
CLCNKA-202ENST00000375692 DEKP35659 375 aaKnown RBP19.08■□□□□ 0.64
CLCNKA-202ENST00000375692 NBR1Q14596 966 aa19.08■□□□□ 0.64
CLCNKA-202ENST00000375692 PZPP20742 1482 aa19.07■□□□□ 0.64
CLCNKA-202ENST00000375692 ADGBQ8N7X0 1667 aa19.07■□□□□ 0.64
CLCNKA-202ENST00000375692 POLR1AO95602 1720 aaPredicted RBP19.07■□□□□ 0.64
CLCNKA-202ENST00000375692 BCORL1Q5H9F3 1711 aa19.06■□□□□ 0.64
CLCNKA-202ENST00000375692 ARAP3Q8WWN8 1544 aa19.06■□□□□ 0.64
CLCNKA-202ENST00000375692 ADGRL1O94910 1474 aa19.05■□□□□ 0.64
CLCNKA-202ENST00000375692 SPAG9O60271 1321 aaKnown RBP19.05■□□□□ 0.64
CLCNKA-202ENST00000375692 MYT1LQ9UL68 1186 aa19.05■□□□□ 0.64
CLCNKA-202ENST00000375692 RNF123Q5XPI4 1314 aa19.05■□□□□ 0.64
CLCNKA-202ENST00000375692 PKD2Q13563 968 aa19.05■□□□□ 0.64
CLCNKA-202ENST00000375692 PNISRQ8TF01 805 aaKnown RBP19.04■□□□□ 0.64
CLCNKA-202ENST00000375692 TMC1Q8TDI8 760 aa19.03■□□□□ 0.64
CLCNKA-202ENST00000375692 RAPGEF3O95398 923 aa19.01■□□□□ 0.63
CLCNKA-202ENST00000375692 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.01■□□□□ 0.63
CLCNKA-202ENST00000375692 NUP155O75694 1391 aa19■□□□□ 0.63
CLCNKA-202ENST00000375692 MAST1Q9Y2H9 1570 aa18.97■□□□□ 0.63
CLCNKA-202ENST00000375692 CARD11Q9BXL7 1154 aa18.96■□□□□ 0.63
CLCNKA-202ENST00000375692 KDM2AQ9Y2K7 1162 aa18.96■□□□□ 0.63
CLCNKA-202ENST00000375692 ANP32AP39687 249 aaKnown RBP18.95■□□□□ 0.62
CLCNKA-202ENST00000375692 IPO9Q96P70 1041 aaKnown RBP18.95■□□□□ 0.62
CLCNKA-202ENST00000375692 SALL2Q9Y467 1007 aaPredicted RBP18.94■□□□□ 0.62
CLCNKA-202ENST00000375692 KDM5CP41229 1560 aa18.94■□□□□ 0.62
CLCNKA-202ENST00000375692 DIP2BQ9P265 1576 aa18.93■□□□□ 0.62
CLCNKA-202ENST00000375692 ARID4BQ4LE39 1312 aaPredicted RBP18.93■□□□□ 0.62
CLCNKA-202ENST00000375692 ST20-MTHFSA0A0A6YYL1 179 aa18.93■□□□□ 0.62
CLCNKA-202ENST00000375692 ZFYVE16Q7Z3T8 1539 aa18.92■□□□□ 0.62
CLCNKA-202ENST00000375692 MAP3K4Q9Y6R4 1608 aa18.92■□□□□ 0.62
CLCNKA-202ENST00000375692 RTEL1-TNFRSF6BF6WH68 1400 aa18.91■□□□□ 0.62
CLCNKA-202ENST00000375692 PLXNC1O60486 1568 aa18.91■□□□□ 0.62
CLCNKA-202ENST00000375692 ZBTB47Q9UFB7 747 aaPredicted RBP18.9■□□□□ 0.62
CLCNKA-202ENST00000375692 EXOC6Q8TAG9 804 aa18.9■□□□□ 0.62
CLCNKA-202ENST00000375692 GLI2P10070 1586 aa18.9■□□□□ 0.62
CLCNKA-202ENST00000375692 TSPOAP1O95153 1857 aa18.9■□□□□ 0.62
CLCNKA-202ENST00000375692 ATP7AQ04656 1500 aa18.9■□□□□ 0.62
CLCNKA-202ENST00000375692 DUOX2Q9NRD8 1548 aa18.89■□□□□ 0.62
CLCNKA-202ENST00000375692 ZNF518AQ6AHZ1 1483 aa18.89■□□□□ 0.61
CLCNKA-202ENST00000375692 POGZQ7Z3K3 1410 aa18.89■□□□□ 0.61
CLCNKA-202ENST00000375692 ROCK2O75116 1388 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-202ENST00000375692 KIF3BO15066 747 aa18.88■□□□□ 0.61
CLCNKA-202ENST00000375692 NEO1Q92859 1461 aa18.88■□□□□ 0.61
CLCNKA-202ENST00000375692 LRPPRCP42704 1394 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-202ENST00000375692 RRP1P56182 461 aaKnown RBP18.87■□□□□ 0.61
CLCNKA-202ENST00000375692 DCAF11Q8TEB1 546 aa18.87■□□□□ 0.61
CLCNKA-202ENST00000375692 NPM2Q86SE8 214 aaKnown RBP18.87■□□□□ 0.61
CLCNKA-202ENST00000375692 MYBBP1AQ9BQG0 1328 aaKnown RBP18.86■□□□□ 0.61
CLCNKA-202ENST00000375692 UHRF1BP1Q6BDS2 1440 aa18.86■□□□□ 0.61
CLCNKA-202ENST00000375692 INO80Q9ULG1 1556 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-202ENST00000375692 RALGAPBQ86X10 1494 aa18.86■□□□□ 0.61
CLCNKA-202ENST00000375692 KIDINS220Q9ULH0 1771 aa18.85■□□□□ 0.61
CLCNKA-202ENST00000375692 ERBINQ96RT1 1412 aa18.85■□□□□ 0.61
CLCNKA-202ENST00000375692 BRD4O60885 1362 aaPredicted RBP18.84■□□□□ 0.61
CLCNKA-202ENST00000375692 RCAN3Q9UKA8 241 aa18.84■□□□□ 0.61
CLCNKA-202ENST00000375692 FAM135AQ9P2D6 1515 aa18.83■□□□□ 0.61
CLCNKA-202ENST00000375692 CFAP74Q9C0B2 1584 aa18.83■□□□□ 0.61
CLCNKA-202ENST00000375692 RALBP1Q15311 655 aa18.83■□□□□ 0.6
CLCNKA-202ENST00000375692 DNAJC5Q9H3Z4 198 aa18.81■□□□□ 0.6
CLCNKA-202ENST00000375692 PPRC1Q5VV67 1664 aaKnown RBP18.8■□□□□ 0.6
CLCNKA-202ENST00000375692 KDM5DQ9BY66 1539 aa18.8■□□□□ 0.6
CLCNKA-202ENST00000375692 RTL5Q5HYW3 569 aaPredicted RBP18.8■□□□□ 0.6
CLCNKA-202ENST00000375692 CDCA7LQ96GN5 454 aa18.8■□□□□ 0.6
CLCNKA-202ENST00000375692 KIF13AQ9H1H9 1805 aa18.79■□□□□ 0.6
CLCNKA-202ENST00000375692 MLH3Q9UHC1 1453 aa18.79■□□□□ 0.6
CLCNKA-202ENST00000375692 YEATS2Q9ULM3 1422 aa18.78■□□□□ 0.6
CLCNKA-202ENST00000375692 GGT6Q6P531 493 aa18.78■□□□□ 0.6
CLCNKA-202ENST00000375692 UNC13BO14795 1591 aa18.78■□□□□ 0.6
CLCNKA-202ENST00000375692 COL17A1Q9UMD9 1497 aaPredicted RBP18.77■□□□□ 0.6
CLCNKA-202ENST00000375692 PDE4AP27815 886 aa18.77■□□□□ 0.6
CLCNKA-202ENST00000375692 A2MP01023 1474 aa18.76■□□□□ 0.59
CLCNKA-202ENST00000375692 PLIN1O60240 522 aa18.76■□□□□ 0.59
CLCNKA-202ENST00000375692 TRHP20396 242 aaPredicted RBP18.76■□□□□ 0.59
CLCNKA-202ENST00000375692 TCERG1O14776 1098 aaKnown RBP18.76■□□□□ 0.59
CLCNKA-202ENST00000375692 NLRP13Q86W25 1043 aa18.76■□□□□ 0.59
CLCNKA-202ENST00000375692 HECW2Q9P2P5 1572 aa18.75■□□□□ 0.59
CLCNKA-202ENST00000375692 KTN1Q86UP2 1357 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-202ENST00000375692 SKAP1Q86WV1 359 aa18.75■□□□□ 0.59
CLCNKA-202ENST00000375692 RICTORQ6R327 1708 aa18.75■□□□□ 0.59
CLCNKA-202ENST00000375692 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms