RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FBXO41Q8TF61 875 aa33.85■■■■□ 3.01
CCDC28B-201ENST00000373602 WASHC2CQ9Y4E1 1318 aa33.84■■■■□ 3.01
CCDC28B-201ENST00000373602 SHANK2Q9UPX8 1470 aa33.83■■■■□ 3.01
CCDC28B-201ENST00000373602 MYO3AQ8NEV4 1616 aa33.83■■■■□ 3.01
CCDC28B-201ENST00000373602 NCOA1Q15788 1441 aa33.83■■■■□ 3.01
CCDC28B-201ENST00000373602 RNF17Q9BXT8 1623 aaKnown RBP33.82■■■■□ 3
CCDC28B-201ENST00000373602 EIF2AK4Q9P2K8 1649 aaKnown RBP33.81■■■■□ 3
CCDC28B-201ENST00000373602 ZNF142P52746 1687 aaPredicted RBP33.8■■■■□ 3
CCDC28B-201ENST00000373602 PTPRTO14522 1441 aa33.8■■■■□ 3
CCDC28B-201ENST00000373602 CROCC2H7BZ55 1655 aa33.8■■■■□ 3
CCDC28B-201ENST00000373602 CAMSAP1Q5T5Y3 1602 aa33.79■■■■□ 3
CCDC28B-201ENST00000373602 PZPP20742 1482 aa33.79■■■■□ 3
CCDC28B-201ENST00000373602 CEP170BQ9Y4F5 1589 aaPredicted RBP33.79■■■■□ 3
CCDC28B-201ENST00000373602 DUOX2Q9NRD8 1548 aa33.79■■■■□ 3
CCDC28B-201ENST00000373602 DAPK1P53355 1430 aa33.79■■■■□ 3
CCDC28B-201ENST00000373602 DNMT1P26358 1616 aaKnown RBP33.78■■■■□ 3
CCDC28B-201ENST00000373602 FBXO31Q5XUX0 539 aaPredicted RBP33.76■■■□□ 2.99
CCDC28B-201ENST00000373602 KIF15Q9NS87 1388 aa33.74■■■□□ 2.99
CCDC28B-201ENST00000373602 CERKQ8TCT0 537 aa33.73■■■□□ 2.99
CCDC28B-201ENST00000373602 TNRQ92752 1358 aa33.72■■■□□ 2.99
CCDC28B-201ENST00000373602 A2ML1A8K2U0 1454 aa33.72■■■□□ 2.99
CCDC28B-201ENST00000373602 PLA2R1Q13018 1463 aa33.71■■■□□ 2.99
CCDC28B-201ENST00000373602 ABCC3O15438 1527 aa33.71■■■□□ 2.99
CCDC28B-201ENST00000373602 MROH1Q8NDA8 1641 aa33.71■■■□□ 2.99
CCDC28B-201ENST00000373602 RRP7BPQ9NSQ0 103 aa33.7■■■□□ 2.99
CCDC28B-201ENST00000373602 ZC3H13Q5T200 1668 aaKnown RBP33.69■■■□□ 2.98
CCDC28B-201ENST00000373602 ERBINQ96RT1 1412 aa33.68■■■□□ 2.98
CCDC28B-201ENST00000373602 NCKAP5LQ9HCH0 1330 aa33.66■■■□□ 2.98
CCDC28B-201ENST00000373602 PKD2Q13563 968 aa33.65■■■□□ 2.98
CCDC28B-201ENST00000373602 ANKRD30AQ9BXX3 1397 aa33.63■■■□□ 2.97
CCDC28B-201ENST00000373602 CHIC2Q9UKJ5 165 aa33.63■■■□□ 2.97
CCDC28B-201ENST00000373602 FAM50AQ14320 339 aaKnown RBP33.6■■■□□ 2.97
CCDC28B-201ENST00000373602 PRDM15P57071 1507 aaPredicted RBP33.59■■■□□ 2.97
CCDC28B-201ENST00000373602 NLRP1Q9C000 1473 aa33.59■■■□□ 2.97
CCDC28B-201ENST00000373602 CEP152O94986 1710 aa33.58■■■□□ 2.97
CCDC28B-201ENST00000373602 SPATA31D1Q6ZQQ2 1576 aa33.57■■■□□ 2.96
CCDC28B-201ENST00000373602 ADGRL2O95490 1459 aa33.56■■■□□ 2.96
CCDC28B-201ENST00000373602 DEPDC5O75140 1603 aa33.54■■■□□ 2.96
CCDC28B-201ENST00000373602 LTBP4Q8N2S1 1624 aa33.54■■■□□ 2.96
CCDC28B-201ENST00000373602 ERVK-7P63135 1459 aa33.54■■■□□ 2.96
CCDC28B-201ENST00000373602 THEMISQ8N1K5 641 aaPredicted RBP33.5■■■□□ 2.95
CCDC28B-201ENST00000373602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.5■■■□□ 2.95
CCDC28B-201ENST00000373602 ARHGAP31Q2M1Z3 1444 aa33.5■■■□□ 2.95
CCDC28B-201ENST00000373602 UGGT1Q9NYU2 1555 aa33.49■■■□□ 2.95
CCDC28B-201ENST00000373602 KANK1Q14678 1352 aa33.47■■■□□ 2.95
CCDC28B-201ENST00000373602 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.46■■■□□ 2.95
CCDC28B-201ENST00000373602 POLR1AO95602 1720 aaPredicted RBP33.43■■■□□ 2.94
CCDC28B-201ENST00000373602 VWDEQ8N2E2 1590 aa33.43■■■□□ 2.94
CCDC28B-201ENST00000373602 NEURL4Q96JN8 1562 aa33.43■■■□□ 2.94
CCDC28B-201ENST00000373602 CFAP65Q6ZU64 1925 aaKnown RBP33.42■■■□□ 2.94
CCDC28B-201ENST00000373602 ANKLE2Q86XL3 938 aa33.42■■■□□ 2.94
CCDC28B-201ENST00000373602 ZNF335Q9H4Z2 1342 aaPredicted RBP33.42■■■□□ 2.94
CCDC28B-201ENST00000373602 LMTK2Q8IWU2 1503 aa33.42■■■□□ 2.94
CCDC28B-201ENST00000373602 IQSEC2Q5JU85 1478 aa33.39■■■□□ 2.94
CCDC28B-201ENST00000373602 ANKRD50Q9ULJ7 1429 aa33.39■■■□□ 2.94
CCDC28B-201ENST00000373602 PPARGC1BQ86YN6 1023 aaKnown RBP33.38■■■□□ 2.93
CCDC28B-201ENST00000373602 MED14O60244 1454 aa33.33■■■□□ 2.93
CCDC28B-201ENST00000373602 ROCK1Q13464 1354 aa33.32■■■□□ 2.92
CCDC28B-201ENST00000373602 UBR1Q8IWV7 1749 aa33.31■■■□□ 2.92
CCDC28B-201ENST00000373602 NPHP4O75161 1426 aaPredicted RBP33.3■■■□□ 2.92
CCDC28B-201ENST00000373602 EFCAB6Q5THR3 1501 aa33.28■■■□□ 2.92
CCDC28B-201ENST00000373602 NOS1P29475 1434 aa33.23■■■□□ 2.91
CCDC28B-201ENST00000373602 ARHGAP23Q9P227 1491 aa33.23■■■□□ 2.91
CCDC28B-201ENST00000373602 PIK3C2BO00750 1634 aa33.22■■■□□ 2.91
CCDC28B-201ENST00000373602 IQGAP1P46940 1657 aa33.22■■■□□ 2.91
CCDC28B-201ENST00000373602 SLIT1O75093 1534 aa33.22■■■□□ 2.91
CCDC28B-201ENST00000373602 ITGAEP38570 1179 aa33.21■■■□□ 2.91
CCDC28B-201ENST00000373602 UNC13BO14795 1591 aa33.21■■■□□ 2.91
CCDC28B-201ENST00000373602 IDI1Q13907 227 aa33.2■■■□□ 2.91
CCDC28B-201ENST00000373602 SYNMO15061 1565 aa33.2■■■□□ 2.91
CCDC28B-201ENST00000373602 RPRD2Q5VT52 1461 aaKnown RBP33.19■■■□□ 2.9
CCDC28B-201ENST00000373602 SCAF11Q99590 1463 aaKnown RBP33.18■■■□□ 2.9
CCDC28B-201ENST00000373602 CPS1P31327 1500 aa33.18■■■□□ 2.9
CCDC28B-201ENST00000373602 TET3O43151 1660 aa33.17■■■□□ 2.9
CCDC28B-201ENST00000373602 LTKP29376 864 aa33.16■■■□□ 2.9
CCDC28B-201ENST00000373602 KDM5AP29375 1690 aaKnown RBP33.16■■■□□ 2.9
CCDC28B-201ENST00000373602 TXNDC2Q86VQ3 553 aa33.15■■■□□ 2.9
CCDC28B-201ENST00000373602 RRBP1Q9P2E9 1410 aaKnown RBP33.15■■■□□ 2.9
CCDC28B-201ENST00000373602 STAG3Q9UJ98 1225 aa33.15■■■□□ 2.9
CCDC28B-201ENST00000373602 TMEM2Q9UHN6 1383 aa33.14■■■□□ 2.9
CCDC28B-201ENST00000373602 SLC52A1Q9NWF4 448 aa33.13■■■□□ 2.89
CCDC28B-201ENST00000373602 EID1Q9Y6B2 187 aa33.12■■■□□ 2.89
CCDC28B-201ENST00000373602 GCC2Q8IWJ2 1684 aa33.1■■■□□ 2.89
CCDC28B-201ENST00000373602 UBAP1LF5GYI3 381 aa33.1■■■□□ 2.89
CCDC28B-201ENST00000373602 IQGAP3Q86VI3 1631 aa33.07■■■□□ 2.88
CCDC28B-201ENST00000373602 ADGRB3O60242 1522 aa33.07■■■□□ 2.88
CCDC28B-201ENST00000373602 NUP155O75694 1391 aa33.04■■■□□ 2.88
CCDC28B-201ENST00000373602 E9PCH4 1651 aa33.02■■■□□ 2.88
CCDC28B-201ENST00000373602 STRCP1A6NGW2 1772 aa33.01■■■□□ 2.88
CCDC28B-201ENST00000373602 LRRC7Q96NW7 1537 aa32.95■■■□□ 2.87
CCDC28B-201ENST00000373602 TOM1O60784 492 aa32.94■■■□□ 2.86
CCDC28B-201ENST00000373602 TMEM131LA2VDJ0 1609 aa32.91■■■□□ 2.86
CCDC28B-201ENST00000373602 NAIPQ13075 1403 aa32.91■■■□□ 2.86
CCDC28B-201ENST00000373602 ZFYVE9O95405 1425 aa32.9■■■□□ 2.86
CCDC28B-201ENST00000373602 MYO5BQ9ULV0 1848 aa32.89■■■□□ 2.86
CCDC28B-201ENST00000373602 RIMS2Q9UQ26 1411 aa32.86■■■□□ 2.85
CCDC28B-201ENST00000373602 HDGFP51858 240 aaKnown RBP32.85■■■□□ 2.85
CCDC28B-201ENST00000373602 SLC26A8Q96RN1 970 aa32.85■■■□□ 2.85
CCDC28B-201ENST00000373602 CHGAP10645 457 aaKnown RBP32.84■■■□□ 2.85
CCDC28B-201ENST00000373602 PIP4K2BP78356 416 aa32.84■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms