RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 RALGAPBQ86X10 1494 aa18.1■□□□□ 0.49
USP49-201ENST00000373006 UHRF1BP1Q6BDS2 1440 aa18.09■□□□□ 0.49
USP49-201ENST00000373006 PDE3BQ13370 1112 aa18.08■□□□□ 0.49
USP49-201ENST00000373006 MRC2Q9UBG0 1479 aa18.08■□□□□ 0.49
USP49-201ENST00000373006 RGL3Q3MIN7 710 aa18.08■□□□□ 0.48
USP49-201ENST00000373006 USP35Q9P2H5 1018 aa18.08■□□□□ 0.48
USP49-201ENST00000373006 KTN1Q86UP2 1357 aaKnown RBP18.08■□□□□ 0.48
USP49-201ENST00000373006 GPATCH8Q9UKJ3 1502 aaKnown RBP18.08■□□□□ 0.48
USP49-201ENST00000373006 DISP1Q96F81 1524 aa18.07■□□□□ 0.48
USP49-201ENST00000373006 PPM1GO15355 546 aaPredicted RBP18.07■□□□□ 0.48
USP49-201ENST00000373006 PBRM1Q86U86 1689 aa18.07■□□□□ 0.48
USP49-201ENST00000373006 C20orf194Q5TEA3 1177 aa18.06■□□□□ 0.48
USP49-201ENST00000373006 ADAMTS12P58397 1594 aa18.06■□□□□ 0.48
USP49-201ENST00000373006 NBPF1Q3BBV0 1214 aa18.06■□□□□ 0.48
USP49-201ENST00000373006 TROQ12816 1431 aaPredicted RBP18.06■□□□□ 0.48
USP49-201ENST00000373006 KIAA0586Q9BVV6 1533 aa18.04■□□□□ 0.48
USP49-201ENST00000373006 PER1O15534 1290 aaPredicted RBP18.04■□□□□ 0.48
USP49-201ENST00000373006 UBE2Q2Q8WVN8 375 aa18.04■□□□□ 0.48
USP49-201ENST00000373006 PARD3Q8TEW0 1356 aa18.03■□□□□ 0.48
USP49-201ENST00000373006 RAPGEF6Q8TEU7 1601 aa18.02■□□□□ 0.48
USP49-201ENST00000373006 KIAA0556O60303 1618 aa18.02■□□□□ 0.48
USP49-201ENST00000373006 PLB1Q6P1J6 1458 aa18.02■□□□□ 0.48
USP49-201ENST00000373006 HNRNPMP52272 730 aaKnown RBP eCLIP18.02■□□□□ 0.48
USP49-201ENST00000373006 PLEKHD1A6NEE1 506 aa18.01■□□□□ 0.47
USP49-201ENST00000373006 TSPY4P0CV99 314 aa18.01■□□□□ 0.47
USP49-201ENST00000373006 TSPY10P0CW01 314 aa18.01■□□□□ 0.47
USP49-201ENST00000373006 ADGRL2O95490 1459 aa18.01■□□□□ 0.47
USP49-201ENST00000373006 DDRGK1Q96HY6 314 aa17.99■□□□□ 0.47
USP49-201ENST00000373006 PANK3Q9H999 370 aa17.99■□□□□ 0.47
USP49-201ENST00000373006 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.99■□□□□ 0.47
USP49-201ENST00000373006 WASHC2CQ9Y4E1 1318 aa17.99■□□□□ 0.47
USP49-201ENST00000373006 NFKBIBQ15653 356 aa17.99■□□□□ 0.47
USP49-201ENST00000373006 JPH4Q96JJ6 628 aa17.99■□□□□ 0.47
USP49-201ENST00000373006 DAXXQ9UER7 740 aaPredicted RBP17.98■□□□□ 0.47
USP49-201ENST00000373006 ADGBQ8N7X0 1667 aa17.98■□□□□ 0.47
USP49-201ENST00000373006 GSE1Q14687 1217 aa17.97■□□□□ 0.47
USP49-201ENST00000373006 C9orf84Q5VXU9 1444 aa17.97■□□□□ 0.47
USP49-201ENST00000373006 ADAMTS8Q9UP79 889 aa17.96■□□□□ 0.47
USP49-201ENST00000373006 ARHGEF12Q9NZN5 1544 aa17.96■□□□□ 0.47
USP49-201ENST00000373006 ARXQ96QS3 562 aa17.96■□□□□ 0.47
USP49-201ENST00000373006 SLC24A1O60721 1099 aa17.95■□□□□ 0.46
USP49-201ENST00000373006 DISP3Q9P2K9 1392 aa17.94■□□□□ 0.46
USP49-201ENST00000373006 FRAT1Q92837 279 aaPredicted RBP17.93■□□□□ 0.46
USP49-201ENST00000373006 RGS3P49796 1198 aa17.92■□□□□ 0.46
USP49-201ENST00000373006 ITSN2Q9NZM3 1697 aa17.92■□□□□ 0.46
USP49-201ENST00000373006 E9PCH4 1651 aa17.92■□□□□ 0.46
USP49-201ENST00000373006 TESK2Q96S53 571 aa17.91■□□□□ 0.46
USP49-201ENST00000373006 PLEKHG5O94827 1062 aa17.91■□□□□ 0.46
USP49-201ENST00000373006 KDM2BQ8NHM5 1336 aa17.9■□□□□ 0.46
USP49-201ENST00000373006 CROCC2H7BZ55 1655 aa17.9■□□□□ 0.46
USP49-201ENST00000373006 PRAG1Q86YV5 1406 aa17.9■□□□□ 0.46
USP49-201ENST00000373006 GRIN2AQ12879 1464 aa17.89■□□□□ 0.45
USP49-201ENST00000373006 IFT140Q96RY7 1462 aa17.89■□□□□ 0.45
USP49-201ENST00000373006 BLMP54132 1417 aaPredicted RBP17.89■□□□□ 0.45
USP49-201ENST00000373006 CCDC144AA2RUR9 1427 aa17.88■□□□□ 0.45
USP49-201ENST00000373006 CENPQQ7L2Z9 268 aaPredicted RBP17.88■□□□□ 0.45
USP49-201ENST00000373006 C8orf34Q49A92 452 aa17.88■□□□□ 0.45
USP49-201ENST00000373006 FAM161AQ3B820 660 aa17.87■□□□□ 0.45
USP49-201ENST00000373006 CEP170Q5SW79 1584 aa17.87■□□□□ 0.45
USP49-201ENST00000373006 FRAT2O75474 233 aaPredicted RBP17.87■□□□□ 0.45
USP49-201ENST00000373006 DUSP27Q5VZP5 1158 aa17.87■□□□□ 0.45
USP49-201ENST00000373006 TMF1P82094 1093 aa17.86■□□□□ 0.45
USP49-201ENST00000373006 PLEKHH1Q9ULM0 1364 aa17.86■□□□□ 0.45
USP49-201ENST00000373006 WDR43Q15061 677 aaKnown RBP eCLIP17.85■□□□□ 0.45
USP49-201ENST00000373006 PKNOX2Q96KN3 472 aa17.85■□□□□ 0.45
USP49-201ENST00000373006 KDM5DQ9BY66 1539 aa17.85■□□□□ 0.45
USP49-201ENST00000373006 PTPRGP23470 1445 aa17.83■□□□□ 0.44
USP49-201ENST00000373006 ERBINQ96RT1 1412 aa17.83■□□□□ 0.44
USP49-201ENST00000373006 GOLGA2Q08379 1002 aa17.82■□□□□ 0.44
USP49-201ENST00000373006 CCDC146Q8IYE0 955 aa17.82■□□□□ 0.44
USP49-201ENST00000373006 COL17A1Q9UMD9 1497 aaPredicted RBP17.82■□□□□ 0.44
USP49-201ENST00000373006 ZMYM4Q5VZL5 1548 aa17.82■□□□□ 0.44
USP49-201ENST00000373006 CARMIL2Q6F5E8 1435 aa17.82■□□□□ 0.44
USP49-201ENST00000373006 PPP2R1AP30153 589 aa17.81■□□□□ 0.44
USP49-201ENST00000373006 KNSTRNQ9Y448 316 aa17.81■□□□□ 0.44
USP49-201ENST00000373006 CDC42BPAQ5VT25 1732 aa17.81■□□□□ 0.44
USP49-201ENST00000373006 FAM135AQ9P2D6 1515 aa17.81■□□□□ 0.44
USP49-201ENST00000373006 TRPM1Q7Z4N2 1603 aa17.81■□□□□ 0.44
USP49-201ENST00000373006 SHANK2Q9UPX8 1470 aa17.8■□□□□ 0.44
USP49-201ENST00000373006 MAGI1Q96QZ7 1491 aaPredicted RBP17.8■□□□□ 0.44
USP49-201ENST00000373006 ADCY10Q96PN6 1610 aa17.79■□□□□ 0.44
USP49-201ENST00000373006 A2MP01023 1474 aa17.79■□□□□ 0.44
USP49-201ENST00000373006 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.79■□□□□ 0.44
USP49-201ENST00000373006 ABCC10Q5T3U5 1492 aa17.78■□□□□ 0.44
USP49-201ENST00000373006 BCAR3O75815 825 aa17.78■□□□□ 0.44
USP49-201ENST00000373006 SPINK5Q9NQ38 1064 aaPredicted RBP17.78■□□□□ 0.44
USP49-201ENST00000373006 GPRASP1Q5JY77 1395 aa17.78■□□□□ 0.44
USP49-201ENST00000373006 PLA2R1Q13018 1463 aa17.78■□□□□ 0.44
USP49-201ENST00000373006 ATP10BO94823 1461 aa17.77■□□□□ 0.44
USP49-201ENST00000373006 EIF4G3O43432 1585 aaKnown RBP17.76■□□□□ 0.43
USP49-201ENST00000373006 INSRP06213 1382 aa17.76■□□□□ 0.43
USP49-201ENST00000373006 VSIG10Q8N0Z9 540 aa17.76■□□□□ 0.43
USP49-201ENST00000373006 PLEKHH2Q8IVE3 1493 aa17.76■□□□□ 0.43
USP49-201ENST00000373006 SLFN5Q08AF3 891 aa17.75■□□□□ 0.43
USP49-201ENST00000373006 ZNF521Q96K83 1311 aa17.75■□□□□ 0.43
USP49-201ENST00000373006 APAF1O14727 1248 aa17.74■□□□□ 0.43
USP49-201ENST00000373006 IGHDP01880 384 aa17.74■□□□□ 0.43
USP49-201ENST00000373006 MAGI2Q86UL8 1455 aa17.73■□□□□ 0.43
USP49-201ENST00000373006 AMER1Q5JTC6 1135 aaPredicted RBP17.73■□□□□ 0.43
USP49-201ENST00000373006 PRDM15P57071 1507 aaPredicted RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms