RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 DYDC1Q8WWB3 177 aa18.73■□□□□ 0.59
COL5A1-201ENST00000371817 ERCC4Q92889 916 aaPredicted RBP18.73■□□□□ 0.59
COL5A1-201ENST00000371817 CENPQQ7L2Z9 268 aaPredicted RBP18.73■□□□□ 0.59
COL5A1-201ENST00000371817 ZCCHC6Q5VYS8 1495 aaKnown RBP18.73■□□□□ 0.59
COL5A1-201ENST00000371817 HMGN5P82970 282 aaKnown RBP18.73■□□□□ 0.59
COL5A1-201ENST00000371817 USP8P40818 1118 aa18.73■□□□□ 0.59
COL5A1-201ENST00000371817 ANKRD20A12PQ8NF67 263 aa18.72■□□□□ 0.59
COL5A1-201ENST00000371817 SLC4A3P48751 1232 aa18.71■□□□□ 0.59
COL5A1-201ENST00000371817 SENP3Q9H4L4 574 aaPredicted RBP18.71■□□□□ 0.59
COL5A1-201ENST00000371817 MRE11P49959 708 aa18.71■□□□□ 0.59
COL5A1-201ENST00000371817 GOLGA3Q08378 1498 aa18.7■□□□□ 0.58
COL5A1-201ENST00000371817 CHMP4CQ96CF2 233 aa18.7■□□□□ 0.58
COL5A1-201ENST00000371817 RTF1Q92541 710 aaKnown RBP18.69■□□□□ 0.58
COL5A1-201ENST00000371817 TSPYL1Q9H0U9 437 aa18.69■□□□□ 0.58
COL5A1-201ENST00000371817 FOXD4L6Q3SYB3 417 aaPredicted RBP18.69■□□□□ 0.58
COL5A1-201ENST00000371817 FOXD4L3Q6VB84 417 aaPredicted RBP18.69■□□□□ 0.58
COL5A1-201ENST00000371817 FAM184AQ8NB25 1140 aa18.68■□□□□ 0.58
COL5A1-201ENST00000371817 HOOK1Q9UJC3 728 aaKnown RBP18.68■□□□□ 0.58
COL5A1-201ENST00000371817 SIN3AQ96ST3 1273 aa18.68■□□□□ 0.58
COL5A1-201ENST00000371817 INCENPQ9NQS7 918 aa18.67■□□□□ 0.58
COL5A1-201ENST00000371817 FBXO3Q9UK99 471 aa18.67■□□□□ 0.58
COL5A1-201ENST00000371817 KIAA0754O94854 1291 aa18.66■□□□□ 0.58
COL5A1-201ENST00000371817 RALBP1Q15311 655 aa18.66■□□□□ 0.58
COL5A1-201ENST00000371817 CHMP5Q9NZZ3 219 aa18.65■□□□□ 0.58
COL5A1-201ENST00000371817 SMC4Q9NTJ3 1288 aa18.65■□□□□ 0.58
COL5A1-201ENST00000371817 MORC1Q86VD1 984 aa18.64■□□□□ 0.58
COL5A1-201ENST00000371817 PCMTD1Q96MG8 357 aaPredicted RBP18.64■□□□□ 0.58
COL5A1-201ENST00000371817 GOLGA6L7A0A1B0GV03 622 aa18.64■□□□□ 0.57
COL5A1-201ENST00000371817 POGKQ9P215 609 aa18.64■□□□□ 0.57
COL5A1-201ENST00000371817 RBM10P98175 930 aaKnown RBP18.64■□□□□ 0.57
COL5A1-201ENST00000371817 MEX3CQ5U5Q3 659 aaKnown RBP18.63■□□□□ 0.57
COL5A1-201ENST00000371817 SASS6Q6UVJ0 657 aa18.63■□□□□ 0.57
COL5A1-201ENST00000371817 NEXNQ0ZGT2 675 aa18.63■□□□□ 0.57
COL5A1-201ENST00000371817 ZRSR2Q15696 482 aaKnown RBP18.62■□□□□ 0.57
COL5A1-201ENST00000371817 MYO6Q9UM54 1294 aa18.62■□□□□ 0.57
COL5A1-201ENST00000371817 NEFHP12036 1026 aa18.62■□□□□ 0.57
COL5A1-201ENST00000371817 SCRIBQ14160 1630 aa18.62■□□□□ 0.57
COL5A1-201ENST00000371817 NFKBIBQ15653 356 aa18.62■□□□□ 0.57
COL5A1-201ENST00000371817 PHLDB1Q86UU1 1377 aa18.61■□□□□ 0.57
COL5A1-201ENST00000371817 PDE3BQ13370 1112 aa18.61■□□□□ 0.57
COL5A1-201ENST00000371817 HDAC5Q9UQL6 1122 aa18.61■□□□□ 0.57
COL5A1-201ENST00000371817 GORABQ5T7V8 394 aa18.61■□□□□ 0.57
COL5A1-201ENST00000371817 CENPJQ9HC77 1338 aaPredicted RBP18.59■□□□□ 0.57
COL5A1-201ENST00000371817 MAPK8IP2Q13387 824 aaPredicted RBP18.59■□□□□ 0.57
COL5A1-201ENST00000371817 NAT10Q9H0A0 1025 aaKnown RBP18.59■□□□□ 0.57
COL5A1-201ENST00000371817 CCDC173Q0VFZ6 552 aa18.59■□□□□ 0.57
COL5A1-201ENST00000371817 CHMP4AQ9BY43 222 aa18.59■□□□□ 0.57
COL5A1-201ENST00000371817 NUCB2P80303 420 aa18.59■□□□□ 0.57
COL5A1-201ENST00000371817 AXDND1Q5T1B0 1012 aaPredicted RBP18.59■□□□□ 0.57
COL5A1-201ENST00000371817 MCTP1Q6DN14 999 aa18.59■□□□□ 0.57
COL5A1-201ENST00000371817 BCL11BQ9C0K0 894 aaPredicted RBP18.58■□□□□ 0.57
COL5A1-201ENST00000371817 CAGE1Q8TC20 777 aa18.58■□□□□ 0.57
COL5A1-201ENST00000371817 IL27Q8NEV9 243 aa18.58■□□□□ 0.56
COL5A1-201ENST00000371817 BRPF3Q9ULD4 1205 aa18.57■□□□□ 0.56
COL5A1-201ENST00000371817 NAP1L1P55209 391 aaKnown RBP18.57■□□□□ 0.56
COL5A1-201ENST00000371817 CT47B1P0C2W7 299 aaPredicted RBP18.56■□□□□ 0.56
COL5A1-201ENST00000371817 BICD2Q8TD16 824 aa18.56■□□□□ 0.56
COL5A1-201ENST00000371817 CCP110O43303 1012 aa18.56■□□□□ 0.56
COL5A1-201ENST00000371817 MARCH6O60337 910 aa18.56■□□□□ 0.56
COL5A1-201ENST00000371817 CHMP3Q9Y3E7 222 aa18.56■□□□□ 0.56
COL5A1-201ENST00000371817 GIMAP7Q8NHV1 300 aa18.56■□□□□ 0.56
COL5A1-201ENST00000371817 REC8O95072 547 aa18.55■□□□□ 0.56
COL5A1-201ENST00000371817 CGNL1Q0VF96 1302 aa18.55■□□□□ 0.56
COL5A1-201ENST00000371817 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.55■□□□□ 0.56
COL5A1-201ENST00000371817 GOLGA6L10A6NI86 522 aa18.53■□□□□ 0.56
COL5A1-201ENST00000371817 SKIDA1Q1XH10 827 aa18.53■□□□□ 0.56
COL5A1-201ENST00000371817 STK31Q9BXU1 1019 aa18.52■□□□□ 0.56
COL5A1-201ENST00000371817 UQCRHLA0A096LP55 91 aa18.52■□□□□ 0.56
COL5A1-201ENST00000371817 UQCRHP07919 91 aa18.52■□□□□ 0.56
COL5A1-201ENST00000371817 AKAP17AQ02040 695 aaKnown RBP18.52■□□□□ 0.56
COL5A1-201ENST00000371817 DCAF11Q8TEB1 546 aa18.52■□□□□ 0.55
COL5A1-201ENST00000371817 SPAG9O60271 1321 aaKnown RBP18.51■□□□□ 0.55
COL5A1-201ENST00000371817 EIF3JO75822 258 aaKnown RBP18.51■□□□□ 0.55
COL5A1-201ENST00000371817 CCDC47Q96A33 483 aaKnown RBP18.51■□□□□ 0.55
COL5A1-201ENST00000371817 VPS53Q5VIR6 699 aa18.51■□□□□ 0.55
COL5A1-201ENST00000371817 HSPA5P11021 654 aaKnown RBP18.51■□□□□ 0.55
COL5A1-201ENST00000371817 CCNB3Q8WWL7 1395 aa18.5■□□□□ 0.55
COL5A1-201ENST00000371817 LETM1O95202 739 aaPredicted RBP18.5■□□□□ 0.55
COL5A1-201ENST00000371817 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
COL5A1-201ENST00000371817 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.55
COL5A1-201ENST00000371817 CLUAP1Q96AJ1 413 aa18.5■□□□□ 0.55
COL5A1-201ENST00000371817 RILPL2Q969X0 211 aa18.5■□□□□ 0.55
COL5A1-201ENST00000371817 LMOD2Q6P5Q4 547 aa18.49■□□□□ 0.55
COL5A1-201ENST00000371817 AEBP1Q8IUX7 1158 aa18.49■□□□□ 0.55
COL5A1-201ENST00000371817 ERICH4A6NGS2 130 aa18.49■□□□□ 0.55
COL5A1-201ENST00000371817 ANKRD45Q5TZF3 282 aa18.48■□□□□ 0.55
COL5A1-201ENST00000371817 UBE2Q2Q8WVN8 375 aa18.48■□□□□ 0.55
COL5A1-201ENST00000371817 TRIM29Q14134 588 aa18.48■□□□□ 0.55
COL5A1-201ENST00000371817 TRAK2O60296 914 aa18.47■□□□□ 0.55
COL5A1-201ENST00000371817 ODF2Q5BJF6 829 aa18.47■□□□□ 0.55
COL5A1-201ENST00000371817 WWC1Q8IX03 1113 aa18.47■□□□□ 0.55
COL5A1-201ENST00000371817 CT47A1Q5JQC4 288 aaPredicted RBP18.46■□□□□ 0.55
COL5A1-201ENST00000371817 CPLX2Q6PUV4 134 aaKnown RBP18.46■□□□□ 0.55
COL5A1-201ENST00000371817 SRPK2P78362 688 aaKnown RBP18.46■□□□□ 0.55
COL5A1-201ENST00000371817 RRP1P56182 461 aaKnown RBP18.46■□□□□ 0.55
COL5A1-201ENST00000371817 TRIM5Q9C035 493 aa18.45■□□□□ 0.54
COL5A1-201ENST00000371817 ZBED9Q6R2W3 1325 aa18.45■□□□□ 0.54
COL5A1-201ENST00000371817 CLASRPQ8N2M8 674 aaKnown RBP18.45■□□□□ 0.54
COL5A1-201ENST00000371817 OLFM4Q6UX06 510 aa18.45■□□□□ 0.54
COL5A1-201ENST00000371817 CCDC73Q6ZRK6 1079 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms