RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 MBD5Q9P267 1494 aa5.92□□□□□ -1.46
MCF2-203ENST00000370576 ZBTB7CA1YPR0 619 aa5.91□□□□□ -1.46
MCF2-203ENST00000370576 RSPH4AQ5TD94 716 aa5.91□□□□□ -1.46
MCF2-203ENST00000370576 CDK13Q14004 1512 aaKnown RBP5.91□□□□□ -1.46
MCF2-203ENST00000370576 FGD6Q6ZV73 1430 aa5.91□□□□□ -1.46
MCF2-203ENST00000370576 KDM6BO15054 1643 aa5.91□□□□□ -1.46
MCF2-203ENST00000370576 GPATCH8Q9UKJ3 1502 aaKnown RBP5.91□□□□□ -1.46
MCF2-203ENST00000370576 PDE4CQ08493 712 aa5.9□□□□□ -1.46
MCF2-203ENST00000370576 HFM1A2PYH4 1435 aa5.9□□□□□ -1.46
MCF2-203ENST00000370576 LMTK2Q8IWU2 1503 aa5.9□□□□□ -1.46
MCF2-203ENST00000370576 RGL2O15211 777 aa5.9□□□□□ -1.47
MCF2-203ENST00000370576 CEP152O94986 1710 aa5.9□□□□□ -1.47
MCF2-203ENST00000370576 KIAA1107Q9UPP5 1409 aa5.9□□□□□ -1.47
MCF2-203ENST00000370576 ATP10AO60312 1499 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 KIAA1210Q9ULL0 1709 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 DIP2BQ9P265 1576 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 KIDINS220Q9ULH0 1771 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 MTMR7Q9Y216 660 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 UACAQ9BZF9 1416 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 PIK3C2BO00750 1634 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 PHLDB1Q86UU1 1377 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 CARMIL2Q6F5E8 1435 aa5.89□□□□□ -1.47
MCF2-203ENST00000370576 PRDM15P57071 1507 aaPredicted RBP5.88□□□□□ -1.47
MCF2-203ENST00000370576 ZFYVE16Q7Z3T8 1539 aa5.88□□□□□ -1.47
MCF2-203ENST00000370576 PLB1Q6P1J6 1458 aa5.87□□□□□ -1.47
MCF2-203ENST00000370576 TEX14Q8IWB6 1497 aa5.87□□□□□ -1.47
MCF2-203ENST00000370576 CLSPNQ9HAW4 1339 aa5.87□□□□□ -1.47
MCF2-203ENST00000370576 PTPRKQ15262 1439 aa5.87□□□□□ -1.47
MCF2-203ENST00000370576 CAMSAP2Q08AD1 1489 aa5.86□□□□□ -1.47
MCF2-203ENST00000370576 MROH2AA6NES4 1674 aa5.86□□□□□ -1.47
MCF2-203ENST00000370576 ABCA6Q8N139 1617 aa5.86□□□□□ -1.47
MCF2-203ENST00000370576 PRG4Q92954 1404 aaPredicted RBP5.86□□□□□ -1.47
MCF2-203ENST00000370576 TET3O43151 1660 aa5.85□□□□□ -1.47
MCF2-203ENST00000370576 RTEL1-TNFRSF6BF6WH68 1400 aa5.85□□□□□ -1.47
MCF2-203ENST00000370576 ZNF518AQ6AHZ1 1483 aa5.85□□□□□ -1.47
MCF2-203ENST00000370576 PLEKHH2Q8IVE3 1493 aa5.85□□□□□ -1.47
MCF2-203ENST00000370576 SIGLEC1Q9BZZ2 1709 aa5.85□□□□□ -1.47
MCF2-203ENST00000370576 ATF5Q9Y2D1 282 aaPredicted RBP5.85□□□□□ -1.47
MCF2-203ENST00000370576 ACIN1Q9UKV3 1341 aaKnown RBP5.85□□□□□ -1.47
MCF2-203ENST00000370576 ONECUT3O60422 494 aaPredicted RBP5.84□□□□□ -1.47
MCF2-203ENST00000370576 E9PCH4 1651 aa5.84□□□□□ -1.47
MCF2-203ENST00000370576 SPHKAPQ2M3C7 1700 aa5.84□□□□□ -1.47
MCF2-203ENST00000370576 NAIPQ13075 1403 aa5.84□□□□□ -1.48
MCF2-203ENST00000370576 CCNB3Q8WWL7 1395 aa5.84□□□□□ -1.48
MCF2-203ENST00000370576 BCCIPQ9P287 314 aaKnown RBP eCLIP5.84□□□□□ -1.48
MCF2-203ENST00000370576 MYO3AQ8NEV4 1616 aa5.83□□□□□ -1.48
MCF2-203ENST00000370576 ARHGEF12Q9NZN5 1544 aa5.83□□□□□ -1.48
MCF2-203ENST00000370576 DAPK1P53355 1430 aa5.83□□□□□ -1.48
MCF2-203ENST00000370576 FAM177A1Q8N128 213 aaPredicted RBP5.83□□□□□ -1.48
MCF2-203ENST00000370576 FGD1P98174 961 aa5.83□□□□□ -1.48
MCF2-203ENST00000370576 ZC3H15Q8WU90 426 aaKnown RBP5.83□□□□□ -1.48
MCF2-203ENST00000370576 HECW2Q9P2P5 1572 aa5.82□□□□□ -1.48
MCF2-203ENST00000370576 ABCC5O15440 1437 aa5.82□□□□□ -1.48
MCF2-203ENST00000370576 SETD1AO15047 1707 aaKnown RBP5.82□□□□□ -1.48
MCF2-203ENST00000370576 PLCH2O75038 1416 aa5.82□□□□□ -1.48
MCF2-203ENST00000370576 KCTD17Q8N5Z5 321 aa5.82□□□□□ -1.48
MCF2-203ENST00000370576 NEO1Q92859 1461 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 NKX1-1Q15270 411 aaPredicted RBP5.81□□□□□ -1.48
MCF2-203ENST00000370576 AGLP35573 1532 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 PZPP20742 1482 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 CC2D2BQ6DHV5 1058 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 TMED8Q6PL24 325 aaPredicted RBP5.81□□□□□ -1.48
MCF2-203ENST00000370576 LMOD2Q6P5Q4 547 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 CCDC125Q86Z20 511 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 BCL11BQ9C0K0 894 aaPredicted RBP5.81□□□□□ -1.48
MCF2-203ENST00000370576 DUOX2Q9NRD8 1548 aa5.81□□□□□ -1.48
MCF2-203ENST00000370576 BRPF3Q9ULD4 1205 aa5.8□□□□□ -1.48
MCF2-203ENST00000370576 ERBINQ96RT1 1412 aa5.8□□□□□ -1.48
MCF2-203ENST00000370576 MLH3Q9UHC1 1453 aa5.8□□□□□ -1.48
MCF2-203ENST00000370576 DIP2CQ9Y2E4 1556 aa5.8□□□□□ -1.48
MCF2-203ENST00000370576 IQGAP1P46940 1657 aa5.79□□□□□ -1.48
MCF2-203ENST00000370576 KANK4Q5T7N3 995 aaPredicted RBP5.79□□□□□ -1.48
MCF2-203ENST00000370576 BARGINQ6ZT62 677 aa5.79□□□□□ -1.48
MCF2-203ENST00000370576 TRPM1Q7Z4N2 1603 aa5.79□□□□□ -1.48
MCF2-203ENST00000370576 MADDQ8WXG6 1647 aa5.78□□□□□ -1.48
MCF2-203ENST00000370576 DHX57Q6P158 1386 aaKnown RBP5.78□□□□□ -1.48
MCF2-203ENST00000370576 PPLO60437 1756 aa5.78□□□□□ -1.48
MCF2-203ENST00000370576 ARID3CA6NKF2 412 aa5.78□□□□□ -1.48
MCF2-203ENST00000370576 MYCNP04198 464 aaPredicted RBP5.78□□□□□ -1.48
MCF2-203ENST00000370576 CCDC141Q6ZP82 1450 aa5.78□□□□□ -1.48
MCF2-203ENST00000370576 RAD21O60216 631 aa5.78□□□□□ -1.48
MCF2-203ENST00000370576 CAMSAP1Q5T5Y3 1602 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 FOXD4L5Q5VV16 416 aaPredicted RBP5.77□□□□□ -1.49
MCF2-203ENST00000370576 TICAM2Q86XR7 235 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 FOXD4L4Q8WXT5 416 aaPredicted RBP5.77□□□□□ -1.49
MCF2-203ENST00000370576 NRXN1Q9ULB1 1477 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 TRPM2O94759 1503 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 NCOA1Q15788 1441 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 GTPBP6O43824 516 aaPredicted RBP5.77□□□□□ -1.49
MCF2-203ENST00000370576 HS6ST3Q8IZP7 471 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 SYCP2Q9BX26 1530 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 ZMYND10O75800 440 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 JPH4Q96JJ6 628 aa5.77□□□□□ -1.49
MCF2-203ENST00000370576 RIMS1Q86UR5 1692 aaKnown RBP5.77□□□□□ -1.49
MCF2-203ENST00000370576 ARHGEF40Q8TER5 1519 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 PIAS4Q8N2W9 510 aaPredicted RBP5.76□□□□□ -1.49
MCF2-203ENST00000370576 ATP7AQ04656 1500 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 SLC24A3Q9HC58 644 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 UHRF1BP1Q6BDS2 1440 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 SETD5Q9C0A6 1442 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms