RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 PHF23Q9BUL5 403 aaPredicted RBP23.37■■□□□ 1.33
LMO4-201ENST00000370542 ARHGEF5Q12774 1597 aa23.36■■□□□ 1.33
LMO4-201ENST00000370542 CLTCQ00610 1675 aaKnown RBP23.35■■□□□ 1.33
LMO4-201ENST00000370542 PLA2R1Q13018 1463 aa23.35■■□□□ 1.33
LMO4-201ENST00000370542 PTPRKQ15262 1439 aa23.34■■□□□ 1.33
LMO4-201ENST00000370542 PIP4K2BP78356 416 aa23.34■■□□□ 1.33
LMO4-201ENST00000370542 GGT6Q6P531 493 aa23.34■■□□□ 1.33
LMO4-201ENST00000370542 TCOF1Q13428 1488 aaKnown RBP23.34■■□□□ 1.33
LMO4-201ENST00000370542 TOM1O60784 492 aa23.33■■□□□ 1.33
LMO4-201ENST00000370542 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.32
LMO4-201ENST00000370542 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
LMO4-201ENST00000370542 FAM135AQ9P2D6 1515 aa23.3■■□□□ 1.32
LMO4-201ENST00000370542 MIA2Q96PC5 1412 aa23.29■■□□□ 1.32
LMO4-201ENST00000370542 ZNF142P52746 1687 aaPredicted RBP23.27■■□□□ 1.32
LMO4-201ENST00000370542 TSPY4P0CV99 314 aa23.26■■□□□ 1.31
LMO4-201ENST00000370542 TSPY10P0CW01 314 aa23.26■■□□□ 1.31
LMO4-201ENST00000370542 MAST1Q9Y2H9 1570 aa23.26■■□□□ 1.31
LMO4-201ENST00000370542 KIF3BO15066 747 aa23.25■■□□□ 1.31
LMO4-201ENST00000370542 MYO3AQ8NEV4 1616 aa23.25■■□□□ 1.31
LMO4-201ENST00000370542 MYOM3Q5VTT5 1437 aa23.25■■□□□ 1.31
LMO4-201ENST00000370542 CEP170BQ9Y4F5 1589 aaPredicted RBP23.22■■□□□ 1.31
LMO4-201ENST00000370542 RGS17Q9UGC6 210 aaPredicted RBP23.21■■□□□ 1.31
LMO4-201ENST00000370542 KDM5DQ9BY66 1539 aa23.21■■□□□ 1.31
LMO4-201ENST00000370542 CPS1P31327 1500 aa23.2■■□□□ 1.3
LMO4-201ENST00000370542 PZPP20742 1482 aa23.19■■□□□ 1.3
LMO4-201ENST00000370542 A2ML1A8K2U0 1454 aa23.17■■□□□ 1.3
LMO4-201ENST00000370542 ALKQ9UM73 1620 aa23.17■■□□□ 1.3
LMO4-201ENST00000370542 RNF17Q9BXT8 1623 aaKnown RBP23.16■■□□□ 1.3
LMO4-201ENST00000370542 WASHC2CQ9Y4E1 1318 aa23.15■■□□□ 1.3
LMO4-201ENST00000370542 SHANK2Q9UPX8 1470 aa23.15■■□□□ 1.3
LMO4-201ENST00000370542 DNMT1P26358 1616 aaKnown RBP23.14■■□□□ 1.29
LMO4-201ENST00000370542 EIF2AK4Q9P2K8 1649 aaKnown RBP23.13■■□□□ 1.29
LMO4-201ENST00000370542 FBXO31Q5XUX0 539 aaPredicted RBP23.13■■□□□ 1.29
LMO4-201ENST00000370542 TNRQ92752 1358 aa23.13■■□□□ 1.29
LMO4-201ENST00000370542 ABCC5O15440 1437 aa23.08■■□□□ 1.29
LMO4-201ENST00000370542 ABCC3O15438 1527 aa23.08■■□□□ 1.29
LMO4-201ENST00000370542 MROH1Q8NDA8 1641 aa23.08■■□□□ 1.29
LMO4-201ENST00000370542 DUOX2Q9NRD8 1548 aa23.08■■□□□ 1.28
LMO4-201ENST00000370542 ZC3H13Q5T200 1668 aaKnown RBP23.07■■□□□ 1.28
LMO4-201ENST00000370542 NLRP1Q9C000 1473 aa23.07■■□□□ 1.28
LMO4-201ENST00000370542 APLP2Q06481 763 aa23.07■■□□□ 1.28
LMO4-201ENST00000370542 PTPN23Q9H3S7 1636 aa23.07■■□□□ 1.28
LMO4-201ENST00000370542 FGD6Q6ZV73 1430 aa23.05■■□□□ 1.28
LMO4-201ENST00000370542 CROCC2H7BZ55 1655 aa23.04■■□□□ 1.28
LMO4-201ENST00000370542 NEURL4Q96JN8 1562 aa23.04■■□□□ 1.28
LMO4-201ENST00000370542 VWDEQ8N2E2 1590 aa23.02■■□□□ 1.28
LMO4-201ENST00000370542 DAPK1P53355 1430 aa23.02■■□□□ 1.28
LMO4-201ENST00000370542 KIF15Q9NS87 1388 aa23.01■■□□□ 1.27
LMO4-201ENST00000370542 ERBINQ96RT1 1412 aa23.01■■□□□ 1.27
LMO4-201ENST00000370542 THEMISQ8N1K5 641 aaPredicted RBP23■■□□□ 1.27
LMO4-201ENST00000370542 POLR1AO95602 1720 aaPredicted RBP22.99■■□□□ 1.27
LMO4-201ENST00000370542 ARHGAP31Q2M1Z3 1444 aa22.99■■□□□ 1.27
LMO4-201ENST00000370542 ERVK-7P63135 1459 aa22.98■■□□□ 1.27
LMO4-201ENST00000370542 PRDM15P57071 1507 aaPredicted RBP22.98■■□□□ 1.27
LMO4-201ENST00000370542 UGGT1Q9NYU2 1555 aa22.98■■□□□ 1.27
LMO4-201ENST00000370542 POTEAQ6S8J7 498 aa22.98■■□□□ 1.27
LMO4-201ENST00000370542 MED14O60244 1454 aa22.98■■□□□ 1.27
LMO4-201ENST00000370542 SENP3Q9H4L4 574 aaPredicted RBP22.97■■□□□ 1.27
LMO4-201ENST00000370542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.96■■□□□ 1.271e-6■■■■■ 32.9
LMO4-201ENST00000370542 DEPDC5O75140 1603 aa22.95■■□□□ 1.26
LMO4-201ENST00000370542 ANKLE2Q86XL3 938 aa22.95■■□□□ 1.26
LMO4-201ENST00000370542 RRP7BPQ9NSQ0 103 aa22.95■■□□□ 1.26
LMO4-201ENST00000370542 CEP152O94986 1710 aa22.94■■□□□ 1.26
LMO4-201ENST00000370542 ANKRD30AQ9BXX3 1397 aa22.91■■□□□ 1.26
LMO4-201ENST00000370542 LRRC7Q96NW7 1537 aa22.91■■□□□ 1.26
LMO4-201ENST00000370542 ADGRL2O95490 1459 aa22.91■■□□□ 1.26
LMO4-201ENST00000370542 LMTK2Q8IWU2 1503 aa22.89■■□□□ 1.26
LMO4-201ENST00000370542 NPHP4O75161 1426 aaPredicted RBP22.88■■□□□ 1.25
LMO4-201ENST00000370542 UBR1Q8IWV7 1749 aa22.86■■□□□ 1.25
LMO4-201ENST00000370542 CFAP65Q6ZU64 1925 aaKnown RBP22.86■■□□□ 1.25
LMO4-201ENST00000370542 ARHGAP23Q9P227 1491 aa22.85■■□□□ 1.25
LMO4-201ENST00000370542 CHIC2Q9UKJ5 165 aa22.84■■□□□ 1.25
LMO4-201ENST00000370542 PELP1Q8IZL8 1130 aaKnown RBP22.83■■□□□ 1.25
LMO4-201ENST00000370542 KANK1Q14678 1352 aa22.83■■□□□ 1.25
LMO4-201ENST00000370542 SLIT1O75093 1534 aa22.82■■□□□ 1.24
LMO4-201ENST00000370542 IQGAP1P46940 1657 aa22.82■■□□□ 1.24
LMO4-201ENST00000370542 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.8■■□□□ 1.24
LMO4-201ENST00000370542 STRCP1A6NGW2 1772 aa22.8■■□□□ 1.24
LMO4-201ENST00000370542 SYNMO15061 1565 aa22.78■■□□□ 1.24
LMO4-201ENST00000370542 NOS1P29475 1434 aa22.78■■□□□ 1.24
LMO4-201ENST00000370542 SCAF11Q99590 1463 aaKnown RBP22.78■■□□□ 1.24
LMO4-201ENST00000370542 KDM5AP29375 1690 aaKnown RBP22.77■■□□□ 1.24
LMO4-201ENST00000370542 ANKRD50Q9ULJ7 1429 aa22.76■■□□□ 1.23
LMO4-201ENST00000370542 LTKP29376 864 aa22.76■■□□□ 1.23
LMO4-201ENST00000370542 FAM50AQ14320 339 aaKnown RBP22.76■■□□□ 1.23
LMO4-201ENST00000370542 EFCAB6Q5THR3 1501 aa22.76■■□□□ 1.23
LMO4-201ENST00000370542 FAM135BQ49AJ0 1406 aa22.75■■□□□ 1.23
LMO4-201ENST00000370542 PIK3C2BO00750 1634 aa22.75■■□□□ 1.23
LMO4-201ENST00000370542 IDI1Q13907 227 aa22.73■■□□□ 1.23
LMO4-201ENST00000370542 UPF1Q92900 1129 aaKnown RBP eCLIP22.73■■□□□ 1.234e-7■■■□□ 15.7
LMO4-201ENST00000370542 TMEM2Q9UHN6 1383 aa22.73■■□□□ 1.23
LMO4-201ENST00000370542 SRCAPQ6ZRS2 3230 aa22.72■■□□□ 1.23
LMO4-201ENST00000370542 SETD1AO15047 1707 aaKnown RBP22.72■■□□□ 1.23
LMO4-201ENST00000370542 TXNDC2Q86VQ3 553 aa22.72■■□□□ 1.23
LMO4-201ENST00000370542 RPRD2Q5VT52 1461 aaKnown RBP22.72■■□□□ 1.23
LMO4-201ENST00000370542 ROCK1Q13464 1354 aa22.71■■□□□ 1.23
LMO4-201ENST00000370542 PCGF6Q9BYE7 350 aa22.7■■□□□ 1.22
LMO4-201ENST00000370542 SLC52A1Q9NWF4 448 aa22.69■■□□□ 1.22
LMO4-201ENST00000370542 EID1Q9Y6B2 187 aa22.67■■□□□ 1.22
LMO4-201ENST00000370542 UNC13BO14795 1591 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms