RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 FAM135AQ9P2D6 1515 aa29.43■■■□□ 2.3
CKS1B-203ENST00000368439 DUOX2Q9NRD8 1548 aa29.42■■■□□ 2.3
CKS1B-203ENST00000368439 PTPRKQ15262 1439 aa29.41■■■□□ 2.3
CKS1B-203ENST00000368439 KDM5DQ9BY66 1539 aa29.4■■■□□ 2.3
CKS1B-203ENST00000368439 MROH1Q8NDA8 1641 aa29.38■■■□□ 2.29
CKS1B-203ENST00000368439 KIF15Q9NS87 1388 aa29.37■■■□□ 2.29
CKS1B-203ENST00000368439 STRCQ7RTU9 1775 aa29.34■■■□□ 2.29
CKS1B-203ENST00000368439 RRP7BPQ9NSQ0 103 aa29.33■■■□□ 2.29
CKS1B-203ENST00000368439 MYO3AQ8NEV4 1616 aa29.33■■■□□ 2.29
CKS1B-203ENST00000368439 ERBINQ96RT1 1412 aa29.32■■■□□ 2.28
CKS1B-203ENST00000368439 WASHC2CQ9Y4E1 1318 aa29.32■■■□□ 2.28
CKS1B-203ENST00000368439 ADGRL2O95490 1459 aa29.31■■■□□ 2.28
CKS1B-203ENST00000368439 FAM50AQ14320 339 aaKnown RBP29.31■■■□□ 2.28
CKS1B-203ENST00000368439 ZC3H13Q5T200 1668 aaKnown RBP29.31■■■□□ 2.28
CKS1B-203ENST00000368439 ABCC3O15438 1527 aa29.3■■■□□ 2.28
CKS1B-203ENST00000368439 PZPP20742 1482 aa29.3■■■□□ 2.28
CKS1B-203ENST00000368439 NCOA1Q15788 1441 aa29.3■■■□□ 2.28
CKS1B-203ENST00000368439 CHIC2Q9UKJ5 165 aa29.3■■■□□ 2.28
CKS1B-203ENST00000368439 ZNF142P52746 1687 aaPredicted RBP29.3■■■□□ 2.28
CKS1B-203ENST00000368439 ANKRD30AQ9BXX3 1397 aa29.29■■■□□ 2.28
CKS1B-203ENST00000368439 PPARGC1BQ86YN6 1023 aaKnown RBP29.29■■■□□ 2.28
CKS1B-203ENST00000368439 DEPDC5O75140 1603 aa29.27■■■□□ 2.28
CKS1B-203ENST00000368439 CEP152O94986 1710 aa29.26■■■□□ 2.27
CKS1B-203ENST00000368439 PRDM15P57071 1507 aaPredicted RBP29.25■■■□□ 2.27
CKS1B-203ENST00000368439 FBXO31Q5XUX0 539 aaPredicted RBP29.25■■■□□ 2.27
CKS1B-203ENST00000368439 CEP170BQ9Y4F5 1589 aaPredicted RBP29.24■■■□□ 2.27
CKS1B-203ENST00000368439 CAMSAP1Q5T5Y3 1602 aa29.2■■■□□ 2.27
CKS1B-203ENST00000368439 TNRQ92752 1358 aa29.18■■■□□ 2.26
CKS1B-203ENST00000368439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.17■■■□□ 2.26
CKS1B-203ENST00000368439 A2ML1A8K2U0 1454 aa29.17■■■□□ 2.26
CKS1B-203ENST00000368439 SPATA31D1Q6ZQQ2 1576 aa29.15■■■□□ 2.26
CKS1B-203ENST00000368439 VWDEQ8N2E2 1590 aa29.15■■■□□ 2.26
CKS1B-203ENST00000368439 CFAP65Q6ZU64 1925 aaKnown RBP29.12■■■□□ 2.25
CKS1B-203ENST00000368439 PTPRTO14522 1441 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 ERVK-7P63135 1459 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 PLA2R1Q13018 1463 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 DMRT2Q9Y5R5 561 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 ARHGAP31Q2M1Z3 1444 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 ANKRD50Q9ULJ7 1429 aa29.11■■■□□ 2.25
CKS1B-203ENST00000368439 ROCK1Q13464 1354 aa29.1■■■□□ 2.25
CKS1B-203ENST00000368439 LMTK2Q8IWU2 1503 aa29.1■■■□□ 2.25
CKS1B-203ENST00000368439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.09■■■□□ 2.25
CKS1B-203ENST00000368439 RRBP1Q9P2E9 1410 aaKnown RBP29.09■■■□□ 2.25
CKS1B-203ENST00000368439 NLRP1Q9C000 1473 aa29.09■■■□□ 2.25
CKS1B-203ENST00000368439 KANK1Q14678 1352 aa29.06■■■□□ 2.24
CKS1B-203ENST00000368439 NCKAP5LQ9HCH0 1330 aa29.04■■■□□ 2.24
CKS1B-203ENST00000368439 ILDR1Q86SU0 546 aaPredicted RBP29.03■■■□□ 2.24
CKS1B-203ENST00000368439 UNC13BO14795 1591 aa29.01■■■□□ 2.23
CKS1B-203ENST00000368439 UGGT1Q9NYU2 1555 aa29.01■■■□□ 2.23
CKS1B-203ENST00000368439 ITGAEP38570 1179 aa29■■■□□ 2.23
CKS1B-203ENST00000368439 PKD2Q13563 968 aa29■■■□□ 2.23
CKS1B-203ENST00000368439 EFCAB6Q5THR3 1501 aa28.99■■■□□ 2.23
CKS1B-203ENST00000368439 POLR1AO95602 1720 aaPredicted RBP28.98■■■□□ 2.23
CKS1B-203ENST00000368439 NEURL4Q96JN8 1562 aa28.96■■■□□ 2.23
CKS1B-203ENST00000368439 UBR1Q8IWV7 1749 aa28.95■■■□□ 2.23
CKS1B-203ENST00000368439 THEMISQ8N1K5 641 aaPredicted RBP28.93■■■□□ 2.22
CKS1B-203ENST00000368439 TET3O43151 1660 aa28.93■■■□□ 2.22
CKS1B-203ENST00000368439 LTBP4Q8N2S1 1624 aa28.92■■■□□ 2.22
CKS1B-203ENST00000368439 CERKQ8TCT0 537 aa28.92■■■□□ 2.22
CKS1B-203ENST00000368439 SYNMO15061 1565 aa28.91■■■□□ 2.22
CKS1B-203ENST00000368439 NOS1P29475 1434 aa28.9■■■□□ 2.22
CKS1B-203ENST00000368439 GCC2Q8IWJ2 1684 aa28.89■■■□□ 2.22
CKS1B-203ENST00000368439 FBXO41Q8TF61 875 aa28.89■■■□□ 2.22
CKS1B-203ENST00000368439 PIK3C2BO00750 1634 aa28.88■■■□□ 2.21
CKS1B-203ENST00000368439 IQGAP3Q86VI3 1631 aa28.88■■■□□ 2.21
CKS1B-203ENST00000368439 RPRD2Q5VT52 1461 aaKnown RBP28.87■■■□□ 2.21
CKS1B-203ENST00000368439 MED14O60244 1454 aa28.85■■■□□ 2.21
CKS1B-203ENST00000368439 ANKLE2Q86XL3 938 aa28.84■■■□□ 2.21
CKS1B-203ENST00000368439 KDM5AP29375 1690 aaKnown RBP28.83■■■□□ 2.21
CKS1B-203ENST00000368439 E9PCH4 1651 aa28.83■■■□□ 2.21
CKS1B-203ENST00000368439 ARHGAP23Q9P227 1491 aa28.82■■■□□ 2.2
CKS1B-203ENST00000368439 SLIT1O75093 1534 aa28.81■■■□□ 2.2
CKS1B-203ENST00000368439 NAIPQ13075 1403 aa28.8■■■□□ 2.2
CKS1B-203ENST00000368439 ZNF335Q9H4Z2 1342 aaPredicted RBP28.8■■■□□ 2.2
CKS1B-203ENST00000368439 IDI1Q13907 227 aa28.8■■■□□ 2.2
CKS1B-203ENST00000368439 NPHP4O75161 1426 aaPredicted RBP28.78■■■□□ 2.2
CKS1B-203ENST00000368439 NUP155O75694 1391 aa28.78■■■□□ 2.2
CKS1B-203ENST00000368439 IQGAP1P46940 1657 aa28.77■■■□□ 2.2
CKS1B-203ENST00000368439 ADGRB3O60242 1522 aa28.74■■■□□ 2.19
CKS1B-203ENST00000368439 HFM1A2PYH4 1435 aa28.73■■■□□ 2.19
CKS1B-203ENST00000368439 SLC52A1Q9NWF4 448 aa28.73■■■□□ 2.19
CKS1B-203ENST00000368439 SCAF11Q99590 1463 aaKnown RBP28.72■■■□□ 2.19
CKS1B-203ENST00000368439 LTKP29376 864 aa28.72■■■□□ 2.19
CKS1B-203ENST00000368439 IQSEC2Q5JU85 1478 aa28.72■■■□□ 2.19
CKS1B-203ENST00000368439 TMEM2Q9UHN6 1383 aa28.71■■■□□ 2.19
CKS1B-203ENST00000368439 MYO5BQ9ULV0 1848 aa28.7■■■□□ 2.18
CKS1B-203ENST00000368439 TXNDC2Q86VQ3 553 aa28.67■■■□□ 2.18
CKS1B-203ENST00000368439 STAG3Q9UJ98 1225 aa28.67■■■□□ 2.18
CKS1B-203ENST00000368439 TMEM131LA2VDJ0 1609 aa28.66■■■□□ 2.18
CKS1B-203ENST00000368439 STRCP1A6NGW2 1772 aa28.63■■■□□ 2.17
CKS1B-203ENST00000368439 SPHKAPQ2M3C7 1700 aa28.62■■■□□ 2.17
CKS1B-203ENST00000368439 CPS1P31327 1500 aa28.62■■■□□ 2.17
CKS1B-203ENST00000368439 EID1Q9Y6B2 187 aa28.61■■■□□ 2.17
CKS1B-203ENST00000368439 ZFYVE9O95405 1425 aa28.58■■■□□ 2.17
CKS1B-203ENST00000368439 RIMS2Q9UQ26 1411 aa28.52■■■□□ 2.16
CKS1B-203ENST00000368439 TRIM52Q96A61 297 aa28.5■■■□□ 2.15
CKS1B-203ENST00000368439 TRPM2O94759 1503 aa28.49■■■□□ 2.15
CKS1B-203ENST00000368439 CLTCL1P53675 1640 aa28.47■■■□□ 2.15
CKS1B-203ENST00000368439 CHGAP10645 457 aaKnown RBP28.47■■■□□ 2.15
CKS1B-203ENST00000368439 LRRC7Q96NW7 1537 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms