RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
VAMP4-202ENST00000367740 CASKIN1Q8WXD9 1431 aa24.43■■□□□ 1.5
VAMP4-202ENST00000367740 STRCP1A6NGW2 1772 aa24.42■■□□□ 1.5
VAMP4-202ENST00000367740 RNF17Q9BXT8 1623 aaKnown RBP24.42■■□□□ 1.5
VAMP4-202ENST00000367740 KIAA1107Q9UPP5 1409 aa24.41■■□□□ 1.5
VAMP4-202ENST00000367740 DEPDC5O75140 1603 aa24.4■■□□□ 1.5
VAMP4-202ENST00000367740 PLEKHH2Q8IVE3 1493 aa24.38■■□□□ 1.49
VAMP4-202ENST00000367740 TNRQ92752 1358 aa24.38■■□□□ 1.49
VAMP4-202ENST00000367740 MED14O60244 1454 aa24.38■■□□□ 1.49
VAMP4-202ENST00000367740 SYNMO15061 1565 aa24.37■■□□□ 1.49
VAMP4-202ENST00000367740 IQGAP1P46940 1657 aa24.37■■□□□ 1.49
VAMP4-202ENST00000367740 RGS17Q9UGC6 210 aaPredicted RBP24.37■■□□□ 1.49
VAMP4-202ENST00000367740 PZPP20742 1482 aa24.35■■□□□ 1.49
VAMP4-202ENST00000367740 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.35■■□□□ 1.49
VAMP4-202ENST00000367740 NPHP4O75161 1426 aaPredicted RBP24.35■■□□□ 1.49
VAMP4-202ENST00000367740 LRRC7Q96NW7 1537 aa24.34■■□□□ 1.49
VAMP4-202ENST00000367740 KDM5DQ9BY66 1539 aa24.32■■□□□ 1.48
VAMP4-202ENST00000367740 FBXO31Q5XUX0 539 aaPredicted RBP24.32■■□□□ 1.48
VAMP4-202ENST00000367740 FYCO1Q9BQS8 1478 aa24.32■■□□□ 1.48
VAMP4-202ENST00000367740 ANKLE2Q86XL3 938 aa24.31■■□□□ 1.48
VAMP4-202ENST00000367740 UGGT1Q9NYU2 1555 aa24.31■■□□□ 1.48
VAMP4-202ENST00000367740 FAM135AQ9P2D6 1515 aa24.3■■□□□ 1.48
VAMP4-202ENST00000367740 NLRP1Q9C000 1473 aa24.28■■□□□ 1.48
VAMP4-202ENST00000367740 CFDP1Q9UEE9 299 aaPredicted RBP24.26■■□□□ 1.47
VAMP4-202ENST00000367740 ZC3H13Q5T200 1668 aaKnown RBP24.25■■□□□ 1.47
VAMP4-202ENST00000367740 THEMISQ8N1K5 641 aaPredicted RBP24.24■■□□□ 1.47
VAMP4-202ENST00000367740 XIRP1Q702N8 1843 aaKnown RBP24.24■■□□□ 1.47
VAMP4-202ENST00000367740 DHX29Q7Z478 1369 aaKnown RBP24.23■■□□□ 1.47
VAMP4-202ENST00000367740 MIA2Q96PC5 1412 aa24.23■■□□□ 1.47
VAMP4-202ENST00000367740 MBD5Q9P267 1494 aa24.23■■□□□ 1.47
VAMP4-202ENST00000367740 RTEL1-TNFRSF6BF6WH68 1400 aa24.22■■□□□ 1.47
VAMP4-202ENST00000367740 CCNB3Q8WWL7 1395 aa24.22■■□□□ 1.47
VAMP4-202ENST00000367740 SETD1AO15047 1707 aaKnown RBP24.21■■□□□ 1.47
VAMP4-202ENST00000367740 TIAM1Q13009 1591 aa24.2■■□□□ 1.46
VAMP4-202ENST00000367740 ZNF644Q9H582 1327 aaPredicted RBP24.17■■□□□ 1.46
VAMP4-202ENST00000367740 POTEAQ6S8J7 498 aa24.17■■□□□ 1.46
VAMP4-202ENST00000367740 KIF3BO15066 747 aa24.15■■□□□ 1.46
VAMP4-202ENST00000367740 WASHC2CQ9Y4E1 1318 aa24.13■■□□□ 1.45
VAMP4-202ENST00000367740 UBR1Q8IWV7 1749 aa24.11■■□□□ 1.45
VAMP4-202ENST00000367740 CCDC141Q6ZP82 1450 aa24.07■■□□□ 1.44
VAMP4-202ENST00000367740 MTUS2Q5JR59 1369 aa24.06■■□□□ 1.44
VAMP4-202ENST00000367740 FAM135BQ49AJ0 1406 aa24.06■■□□□ 1.44
VAMP4-202ENST00000367740 ROBO1Q9Y6N7 1651 aa24.05■■□□□ 1.44
VAMP4-202ENST00000367740 ABCC3O15438 1527 aa24.05■■□□□ 1.44
VAMP4-202ENST00000367740 ERVK-7P63135 1459 aa24.05■■□□□ 1.44
VAMP4-202ENST00000367740 SCAF11Q99590 1463 aaKnown RBP24.05■■□□□ 1.44
VAMP4-202ENST00000367740 EHBP1L1Q8N3D4 1523 aa24.03■■□□□ 1.44
VAMP4-202ENST00000367740 NCOA2Q15596 1464 aa24.01■■□□□ 1.43
VAMP4-202ENST00000367740 CAMSAP2Q08AD1 1489 aa24■■□□□ 1.43
VAMP4-202ENST00000367740 ARHGAP23Q9P227 1491 aa24■■□□□ 1.43
VAMP4-202ENST00000367740 SLIT1O75093 1534 aa24■■□□□ 1.43
VAMP4-202ENST00000367740 CEP152O94986 1710 aa23.98■■□□□ 1.43
VAMP4-202ENST00000367740 CFAP65Q6ZU64 1925 aaKnown RBP23.97■■□□□ 1.43
VAMP4-202ENST00000367740 MROH1Q8NDA8 1641 aa23.97■■□□□ 1.43
VAMP4-202ENST00000367740 CEP162Q5TB80 1403 aa23.96■■□□□ 1.43
VAMP4-202ENST00000367740 MAP3K1Q13233 1512 aa23.95■■□□□ 1.43
VAMP4-202ENST00000367740 ARHGEF5Q12774 1597 aa23.95■■□□□ 1.42
VAMP4-202ENST00000367740 LTKP29376 864 aa23.94■■□□□ 1.42
VAMP4-202ENST00000367740 EIF2AK4Q9P2K8 1649 aaKnown RBP23.94■■□□□ 1.42
VAMP4-202ENST00000367740 PHLPP1O60346 1717 aa23.92■■□□□ 1.42
VAMP4-202ENST00000367740 TMEM94Q12767 1356 aa23.91■■□□□ 1.42
VAMP4-202ENST00000367740 LRRC9Q6ZRR7 1453 aa23.9■■□□□ 1.42
VAMP4-202ENST00000367740 TXNDC2Q86VQ3 553 aa23.88■■□□□ 1.41
VAMP4-202ENST00000367740 PIK3C2BO00750 1634 aa23.87■■□□□ 1.41
VAMP4-202ENST00000367740 SRCAPQ6ZRS2 3230 aa23.87■■□□□ 1.41
VAMP4-202ENST00000367740 RSPH4AQ5TD94 716 aa23.86■■□□□ 1.41
VAMP4-202ENST00000367740 UPF1Q92900 1129 aaKnown RBP eCLIP23.86■■□□□ 1.41
VAMP4-202ENST00000367740 MAST1Q9Y2H9 1570 aa23.86■■□□□ 1.41
VAMP4-202ENST00000367740 COL16A1Q07092 1604 aaPredicted RBP23.83■■□□□ 1.41
VAMP4-202ENST00000367740 NWD1Q149M9 1564 aa23.82■■□□□ 1.4
VAMP4-202ENST00000367740 JCADQ9P266 1359 aa23.82■■□□□ 1.4
VAMP4-202ENST00000367740 PRDM15P57071 1507 aaPredicted RBP23.82■■□□□ 1.4
VAMP4-202ENST00000367740 LRP6O75581 1613 aa23.81■■□□□ 1.4
VAMP4-202ENST00000367740 KDM5AP29375 1690 aaKnown RBP23.8■■□□□ 1.4
VAMP4-202ENST00000367740 EID1Q9Y6B2 187 aa23.8■■□□□ 1.4
VAMP4-202ENST00000367740 TET3O43151 1660 aa23.79■■□□□ 1.4
VAMP4-202ENST00000367740 TMEM2Q9UHN6 1383 aa23.79■■□□□ 1.4
VAMP4-202ENST00000367740 NKTRP30414 1462 aaKnown RBP23.79■■□□□ 1.4
VAMP4-202ENST00000367740 TSPY4P0CV99 314 aa23.78■■□□□ 1.4
VAMP4-202ENST00000367740 TSPY10P0CW01 314 aa23.78■■□□□ 1.4
VAMP4-202ENST00000367740 RBM33Q96EV2 1170 aaKnown RBP23.78■■□□□ 1.4
VAMP4-202ENST00000367740 ARHGAP31Q2M1Z3 1444 aa23.77■■□□□ 1.4
VAMP4-202ENST00000367740 KCNA6P17658 529 aa23.77■■□□□ 1.4
VAMP4-202ENST00000367740 PIAS4Q8N2W9 510 aaPredicted RBP23.75■■□□□ 1.39
VAMP4-202ENST00000367740 EFCAB6Q5THR3 1501 aa23.74■■□□□ 1.39
VAMP4-202ENST00000367740 PROSER2Q86WR7 435 aaPredicted RBP23.74■■□□□ 1.39
VAMP4-202ENST00000367740 TRIM52Q96A61 297 aa23.73■■□□□ 1.39
VAMP4-202ENST00000367740 MSH6P52701 1360 aa23.72■■□□□ 1.39
VAMP4-202ENST00000367740 SHPRHQ149N8 1683 aa23.72■■□□□ 1.39
VAMP4-202ENST00000367740 DUOX2Q9NRD8 1548 aa23.7■■□□□ 1.38
VAMP4-202ENST00000367740 SLC26A8Q96RN1 970 aa23.7■■□□□ 1.38
VAMP4-202ENST00000367740 SLAIN2Q9P270 581 aa23.69■■□□□ 1.38
VAMP4-202ENST00000367740 FGD6Q6ZV73 1430 aa23.68■■□□□ 1.38
VAMP4-202ENST00000367740 SPATA31A6Q5VVP1 1343 aa23.68■■□□□ 1.38
VAMP4-202ENST00000367740 ZNF772Q68DY9 489 aaPredicted RBP23.68■■□□□ 1.38
VAMP4-202ENST00000367740 CHD2O14647 1828 aaKnown RBP23.66■■□□□ 1.38
VAMP4-202ENST00000367740 CDK12Q9NYV4 1490 aaPredicted RBP23.66■■□□□ 1.38
VAMP4-202ENST00000367740 AHDC1Q5TGY3 1603 aaPredicted RBP23.65■■□□□ 1.38
VAMP4-202ENST00000367740 MEX3CQ5U5Q3 659 aaKnown RBP23.64■■□□□ 1.37
VAMP4-202ENST00000367740 ADGRB3O60242 1522 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 236 ms