RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 KDM5DQ9BY66 1539 aa29.23■■■□□ 2.27
CLN3-205ENST00000359984 EIF2AK4Q9P2K8 1649 aaKnown RBP29.23■■■□□ 2.27
CLN3-205ENST00000359984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.23■■■□□ 2.27
CLN3-205ENST00000359984 SLC4A1APQ9BWU0 796 aaKnown RBP29.23■■■□□ 2.27
CLN3-205ENST00000359984 ATP10AO60312 1499 aa29.2■■■□□ 2.27
CLN3-205ENST00000359984 DEPDC5O75140 1603 aa29.16■■■□□ 2.26
CLN3-205ENST00000359984 ARHGEF40Q8TER5 1519 aa29.15■■■□□ 2.26
CLN3-205ENST00000359984 FAM135AQ9P2D6 1515 aa29.15■■■□□ 2.26
CLN3-205ENST00000359984 ZEB1P37275 1124 aaPredicted RBP29.14■■■□□ 2.26
CLN3-205ENST00000359984 FOXD1Q16676 465 aa29.13■■■□□ 2.25
CLN3-205ENST00000359984 BCORL1Q5H9F3 1711 aa29.13■■■□□ 2.25
CLN3-205ENST00000359984 IQGAP3Q86VI3 1631 aa29.13■■■□□ 2.25
CLN3-205ENST00000359984 MROH1Q8NDA8 1641 aa29.12■■■□□ 2.25
CLN3-205ENST00000359984 REREQ9P2R6 1566 aa29.12■■■□□ 2.25
CLN3-205ENST00000359984 PKD2Q13563 968 aa29.12■■■□□ 2.25
CLN3-205ENST00000359984 RNF17Q9BXT8 1623 aaKnown RBP29.11■■■□□ 2.25
CLN3-205ENST00000359984 PRDM15P57071 1507 aaPredicted RBP29.1■■■□□ 2.25
CLN3-205ENST00000359984 KANK1Q14678 1352 aa29.08■■■□□ 2.25
CLN3-205ENST00000359984 GGT6Q6P531 493 aa29.08■■■□□ 2.25
CLN3-205ENST00000359984 VWDEQ8N2E2 1590 aa29.08■■■□□ 2.25
CLN3-205ENST00000359984 SIN3AQ96ST3 1273 aa29.06■■■□□ 2.24
CLN3-205ENST00000359984 AGLP35573 1532 aa29.05■■■□□ 2.24
CLN3-205ENST00000359984 ANKRD30BQ9BXX2 1392 aa29.04■■■□□ 2.24
CLN3-205ENST00000359984 SIGLEC1Q9BZZ2 1709 aa29.02■■■□□ 2.24
CLN3-205ENST00000359984 NEUROD1Q13562 356 aa28.99■■■□□ 2.23
CLN3-205ENST00000359984 LMTK2Q8IWU2 1503 aa28.96■■■□□ 2.23
CLN3-205ENST00000359984 TET3O43151 1660 aa28.96■■■□□ 2.23
CLN3-205ENST00000359984 WASHC2CQ9Y4E1 1318 aa28.95■■■□□ 2.22
CLN3-205ENST00000359984 ABCC3O15438 1527 aa28.93■■■□□ 2.22
CLN3-205ENST00000359984 CEP152O94986 1710 aa28.93■■■□□ 2.22
CLN3-205ENST00000359984 E9PCH4 1651 aa28.91■■■□□ 2.22
CLN3-205ENST00000359984 ARID4BQ4LE39 1312 aaPredicted RBP28.9■■■□□ 2.22
CLN3-205ENST00000359984 MLECQ14165 292 aa28.89■■■□□ 2.22
CLN3-205ENST00000359984 EFCAB6Q5THR3 1501 aa28.89■■■□□ 2.22
CLN3-205ENST00000359984 PPP6R1Q9UPN7 881 aa28.89■■■□□ 2.21
CLN3-205ENST00000359984 PLA2R1Q13018 1463 aa28.88■■■□□ 2.21
CLN3-205ENST00000359984 ZC3H13Q5T200 1668 aaKnown RBP28.85■■■□□ 2.21
CLN3-205ENST00000359984 RPRD2Q5VT52 1461 aaKnown RBP28.84■■■□□ 2.21
CLN3-205ENST00000359984 TIMELESSQ9UNS1 1208 aa28.83■■■□□ 2.2
CLN3-205ENST00000359984 CAMSAP1Q5T5Y3 1602 aa28.82■■■□□ 2.2
CLN3-205ENST00000359984 PTPRTO14522 1441 aa28.81■■■□□ 2.2
CLN3-205ENST00000359984 NPATQ14207 1427 aa28.81■■■□□ 2.2
CLN3-205ENST00000359984 TONSLQ96HA7 1378 aa28.79■■■□□ 2.2
CLN3-205ENST00000359984 ARHGAP31Q2M1Z3 1444 aa28.78■■■□□ 2.2
CLN3-205ENST00000359984 CCDC144AA2RUR9 1427 aa28.77■■■□□ 2.2
CLN3-205ENST00000359984 SPHKAPQ2M3C7 1700 aa28.76■■■□□ 2.19
CLN3-205ENST00000359984 TRPM2O94759 1503 aa28.76■■■□□ 2.19
CLN3-205ENST00000359984 CLTCQ00610 1675 aaKnown RBP28.74■■■□□ 2.19
CLN3-205ENST00000359984 ESF1Q9H501 851 aaKnown RBP28.72■■■□□ 2.19
CLN3-205ENST00000359984 L3MBTL2Q969R5 705 aa28.7■■■□□ 2.18
CLN3-205ENST00000359984 NOS1P29475 1434 aa28.69■■■□□ 2.18
CLN3-205ENST00000359984 CNTLNQ9NXG0 1405 aa28.67■■■□□ 2.18
CLN3-205ENST00000359984 CFAP65Q6ZU64 1925 aaKnown RBP28.67■■■□□ 2.18
CLN3-205ENST00000359984 PPP1R15AO75807 674 aaPredicted RBP28.67■■■□□ 2.18
CLN3-205ENST00000359984 CLTCL1P53675 1640 aa28.66■■■□□ 2.18
CLN3-205ENST00000359984 ZMYM3Q14202 1370 aa28.65■■■□□ 2.18
CLN3-205ENST00000359984 FBXO31Q5XUX0 539 aaPredicted RBP28.65■■■□□ 2.18
CLN3-205ENST00000359984 UGGT1Q9NYU2 1555 aa28.64■■■□□ 2.18
CLN3-205ENST00000359984 PREX1Q8TCU6 1659 aa28.61■■■□□ 2.17
CLN3-205ENST00000359984 SYNMO15061 1565 aa28.61■■■□□ 2.17
CLN3-205ENST00000359984 ERVK-7P63135 1459 aa28.61■■■□□ 2.17
CLN3-205ENST00000359984 SPATA31E1Q6ZUB1 1445 aa28.59■■■□□ 2.17
CLN3-205ENST00000359984 RGL3Q3MIN7 710 aa28.58■■■□□ 2.17
CLN3-205ENST00000359984 MROH2AA6NES4 1674 aa28.57■■■□□ 2.16
CLN3-205ENST00000359984 FER1L4A9Z1Z3 1794 aa28.56■■■□□ 2.16
CLN3-205ENST00000359984 SPATA31D1Q6ZQQ2 1576 aa28.55■■■□□ 2.16
CLN3-205ENST00000359984 PIK3C2BO00750 1634 aa28.54■■■□□ 2.16
CLN3-205ENST00000359984 SLC52A1Q9NWF4 448 aa28.53■■■□□ 2.16
CLN3-205ENST00000359984 IDI1Q13907 227 aa28.53■■■□□ 2.16
CLN3-205ENST00000359984 DCAF11Q8TEB1 546 aa28.51■■■□□ 2.15
CLN3-205ENST00000359984 NEURL4Q96JN8 1562 aa28.5■■■□□ 2.15
CLN3-205ENST00000359984 MADDQ8WXG6 1647 aa28.5■■■□□ 2.15
CLN3-205ENST00000359984 ADAMTSL3P82987 1691 aa28.5■■■□□ 2.15
CLN3-205ENST00000359984 CEBPAP49715 358 aaPredicted RBP28.5■■■□□ 2.15
CLN3-205ENST00000359984 KIF1BO60333 1816 aa28.49■■■□□ 2.15
CLN3-205ENST00000359984 CHGAP10645 457 aaKnown RBP28.48■■■□□ 2.15
CLN3-205ENST00000359984 KDM2AQ9Y2K7 1162 aa28.48■■■□□ 2.15
CLN3-205ENST00000359984 NBPF8Q3BBV2 869 aa28.47■■■□□ 2.15
CLN3-205ENST00000359984 ADGRB3O60242 1522 aa28.47■■■□□ 2.15
CLN3-205ENST00000359984 C3P01024 1663 aa28.46■■■□□ 2.15
CLN3-205ENST00000359984 TNRQ92752 1358 aa28.44■■■□□ 2.14
CLN3-205ENST00000359984 RIMS1Q86UR5 1692 aaKnown RBP28.43■■■□□ 2.14
CLN3-205ENST00000359984 UHRF1BP1Q6BDS2 1440 aa28.42■■■□□ 2.14
CLN3-205ENST00000359984 ZNF326Q5BKZ1 582 aaKnown RBP28.4■■■□□ 2.14
CLN3-205ENST00000359984 PLPPR3Q6T4P5 718 aa28.4■■■□□ 2.14
CLN3-205ENST00000359984 TMEM131LA2VDJ0 1609 aa28.37■■■□□ 2.13
CLN3-205ENST00000359984 STAC3Q96MF2 364 aa28.36■■■□□ 2.13
CLN3-205ENST00000359984 PRAG1Q86YV5 1406 aa28.36■■■□□ 2.13
CLN3-205ENST00000359984 RPGRIP1LQ68CZ1 1315 aa28.35■■■□□ 2.13
CLN3-205ENST00000359984 STAG3Q9UJ98 1225 aa28.34■■■□□ 2.13
CLN3-205ENST00000359984 IFT172Q9UG01 1749 aa28.31■■■□□ 2.12
CLN3-205ENST00000359984 MYO5BQ9ULV0 1848 aa28.3■■■□□ 2.12
CLN3-205ENST00000359984 A2ML1A8K2U0 1454 aa28.3■■■□□ 2.12
CLN3-205ENST00000359984 NLRP1Q9C000 1473 aa28.3■■■□□ 2.12
CLN3-205ENST00000359984 MYOM2P54296 1465 aa28.3■■■□□ 2.12
CLN3-205ENST00000359984 ADGRF5Q8IZF2 1346 aa28.28■■■□□ 2.12
CLN3-205ENST00000359984 NEXMIFQ5QGS0 1516 aa28.28■■■□□ 2.12
CLN3-205ENST00000359984 PPLO60437 1756 aa28.28■■■□□ 2.12
CLN3-205ENST00000359984 RALGAPBQ86X10 1494 aa28.27■■■□□ 2.12
CLN3-205ENST00000359984 PTPRMP28827 1452 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms