RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
UPF2-202ENST00000357604 STAC3Q96MF2 364 aa12.93□□□□□ -0.34
UPF2-202ENST00000357604 HFM1A2PYH4 1435 aa12.92□□□□□ -0.34
UPF2-202ENST00000357604 VGFO15240 615 aaPredicted RBP12.91□□□□□ -0.34
UPF2-202ENST00000357604 TNRQ92752 1358 aa12.91□□□□□ -0.34
UPF2-202ENST00000357604 CLSPNQ9HAW4 1339 aa12.91□□□□□ -0.34
UPF2-202ENST00000357604 ANKLE2Q86XL3 938 aa12.91□□□□□ -0.34
UPF2-202ENST00000357604 CDC42BPAQ5VT25 1732 aa12.91□□□□□ -0.34
UPF2-202ENST00000357604 UHRF1BP1Q6BDS2 1440 aa12.9□□□□□ -0.34
UPF2-202ENST00000357604 ARHGEF40Q8TER5 1519 aa12.9□□□□□ -0.34
UPF2-202ENST00000357604 MAST1Q9Y2H9 1570 aa12.9□□□□□ -0.34
UPF2-202ENST00000357604 ADGRL2O95490 1459 aa12.89□□□□□ -0.35
UPF2-202ENST00000357604 KDM2AQ9Y2K7 1162 aa12.89□□□□□ -0.35
UPF2-202ENST00000357604 FAM135AQ9P2D6 1515 aa12.89□□□□□ -0.35
UPF2-202ENST00000357604 RGL3Q3MIN7 710 aa12.89□□□□□ -0.35
UPF2-202ENST00000357604 NCOA1Q15788 1441 aa12.88□□□□□ -0.35
UPF2-202ENST00000357604 POLR3GLQ9BT43 218 aa12.88□□□□□ -0.35
UPF2-202ENST00000357604 POGKQ9P215 609 aa12.88□□□□□ -0.35
UPF2-202ENST00000357604 ZMYM4Q5VZL5 1548 aa12.87□□□□□ -0.35
UPF2-202ENST00000357604 KDM5DQ9BY66 1539 aa12.87□□□□□ -0.35
UPF2-202ENST00000357604 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
UPF2-202ENST00000357604 EIF3AQ14152 1382 aaKnown RBP12.86□□□□□ -0.35
UPF2-202ENST00000357604 TIMELESSQ9UNS1 1208 aa12.85□□□□□ -0.35
UPF2-202ENST00000357604 PLXNC1O60486 1568 aa12.85□□□□□ -0.35
UPF2-202ENST00000357604 CDCA8Q53HL2 280 aa12.85□□□□□ -0.35
UPF2-202ENST00000357604 YEATS2Q9ULM3 1422 aa12.84□□□□□ -0.35
UPF2-202ENST00000357604 CDC42BPBQ9Y5S2 1711 aa12.84□□□□□ -0.35
UPF2-202ENST00000357604 ZMYM3Q14202 1370 aa12.83□□□□□ -0.36
UPF2-202ENST00000357604 EIF2AK4Q9P2K8 1649 aaKnown RBP12.82□□□□□ -0.36
UPF2-202ENST00000357604 TXNDC2Q86VQ3 553 aa12.81□□□□□ -0.36
UPF2-202ENST00000357604 MBD5Q9P267 1494 aa12.81□□□□□ -0.36
UPF2-202ENST00000357604 DCAF11Q8TEB1 546 aa12.8□□□□□ -0.36
UPF2-202ENST00000357604 KIF13AQ9H1H9 1805 aa12.8□□□□□ -0.36
UPF2-202ENST00000357604 KDM5CP41229 1560 aa12.8□□□□□ -0.36
UPF2-202ENST00000357604 AGLP35573 1532 aa12.79□□□□□ -0.36
UPF2-202ENST00000357604 LRRIQ1Q96JM4 1722 aa12.79□□□□□ -0.36
UPF2-202ENST00000357604 SCAF1Q9H7N4 1312 aaKnown RBP12.79□□□□□ -0.36
UPF2-202ENST00000357604 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
UPF2-202ENST00000357604 NAIPQ13075 1403 aa12.78□□□□□ -0.36
UPF2-202ENST00000357604 RPRD2Q5VT52 1461 aaKnown RBP12.77□□□□□ -0.37
UPF2-202ENST00000357604 INO80Q9ULG1 1556 aaPredicted RBP12.77□□□□□ -0.37
UPF2-202ENST00000357604 DIP2CQ9Y2E4 1556 aa12.76□□□□□ -0.37
UPF2-202ENST00000357604 HAP1P54257 671 aaPredicted RBP12.75□□□□□ -0.37
UPF2-202ENST00000357604 NPATQ14207 1427 aa12.75□□□□□ -0.37
UPF2-202ENST00000357604 ANKRD30BQ9BXX2 1392 aa12.75□□□□□ -0.37
UPF2-202ENST00000357604 NLRP1Q9C000 1473 aa12.75□□□□□ -0.37
UPF2-202ENST00000357604 DHX57Q6P158 1386 aaKnown RBP12.75□□□□□ -0.37
UPF2-202ENST00000357604 ZC3H13Q5T200 1668 aaKnown RBP12.75□□□□□ -0.37
UPF2-202ENST00000357604 ARHGEF12Q9NZN5 1544 aa12.74□□□□□ -0.37
UPF2-202ENST00000357604 CEBPAP49715 358 aaPredicted RBP12.74□□□□□ -0.37
UPF2-202ENST00000357604 CARD11Q9BXL7 1154 aa12.74□□□□□ -0.37
UPF2-202ENST00000357604 GCC2Q8IWJ2 1684 aa12.73□□□□□ -0.37
UPF2-202ENST00000357604 REREQ9P2R6 1566 aa12.73□□□□□ -0.37
UPF2-202ENST00000357604 SENP3Q9H4L4 574 aaPredicted RBP12.73□□□□□ -0.37
UPF2-202ENST00000357604 FOXD1Q16676 465 aa12.72□□□□□ -0.37
UPF2-202ENST00000357604 ATF3P18847 181 aa12.72□□□□□ -0.37
UPF2-202ENST00000357604 ROCK2O75116 1388 aaKnown RBP12.72□□□□□ -0.37
UPF2-202ENST00000357604 ABCA6Q8N139 1617 aa12.71□□□□□ -0.37
UPF2-202ENST00000357604 RICTORQ6R327 1708 aa12.7□□□□□ -0.38
UPF2-202ENST00000357604 PZPP20742 1482 aa12.69□□□□□ -0.38
UPF2-202ENST00000357604 STK26Q9P289 416 aa12.69□□□□□ -0.38
UPF2-202ENST00000357604 NUTM2DQ5VT03 806 aaPredicted RBP12.69□□□□□ -0.38
UPF2-202ENST00000357604 FBXO31Q5XUX0 539 aaPredicted RBP12.69□□□□□ -0.38
UPF2-202ENST00000357604 PROSER2Q86WR7 435 aaPredicted RBP12.69□□□□□ -0.38
UPF2-202ENST00000357604 EIF4G2P78344 907 aaKnown RBP eCLIP12.69□□□□□ -0.38
UPF2-202ENST00000357604 RIMS1Q86UR5 1692 aaKnown RBP12.68□□□□□ -0.38
UPF2-202ENST00000357604 ABCC3O15438 1527 aa12.67□□□□□ -0.38
UPF2-202ENST00000357604 RIMS2Q9UQ26 1411 aa12.67□□□□□ -0.38
UPF2-202ENST00000357604 TMF1P82094 1093 aa12.66□□□□□ -0.38
UPF2-202ENST00000357604 FER1L4A9Z1Z3 1794 aa12.66□□□□□ -0.38
UPF2-202ENST00000357604 TET3O43151 1660 aa12.65□□□□□ -0.38
UPF2-202ENST00000357604 ARHGAP31Q2M1Z3 1444 aa12.65□□□□□ -0.38
UPF2-202ENST00000357604 PTPRMP28827 1452 aa12.65□□□□□ -0.38
UPF2-202ENST00000357604 NEFMP07197 916 aa12.65□□□□□ -0.38
UPF2-202ENST00000357604 CLTCQ00610 1675 aaKnown RBP12.64□□□□□ -0.39
UPF2-202ENST00000357604 PPRC1Q5VV67 1664 aaKnown RBP12.64□□□□□ -0.39
UPF2-202ENST00000357604 SRPK2P78362 688 aaKnown RBP12.64□□□□□ -0.39
UPF2-202ENST00000357604 ERVK-7P63135 1459 aa12.64□□□□□ -0.39
UPF2-202ENST00000357604 A2ML1A8K2U0 1454 aa12.64□□□□□ -0.39
UPF2-202ENST00000357604 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
UPF2-202ENST00000357604 HDGFL2Q7Z4V5 671 aaPredicted RBP12.63□□□□□ -0.39
UPF2-202ENST00000357604 PTPRKQ15262 1439 aa12.63□□□□□ -0.39
UPF2-202ENST00000357604 UGGT1Q9NYU2 1555 aa12.63□□□□□ -0.39
UPF2-202ENST00000357604 UNC13BO14795 1591 aa12.63□□□□□ -0.39
UPF2-202ENST00000357604 LMTK2Q8IWU2 1503 aa12.63□□□□□ -0.39
UPF2-202ENST00000357604 SIN3AQ96ST3 1273 aa12.63□□□□□ -0.39
UPF2-202ENST00000357604 PRDM15P57071 1507 aaPredicted RBP12.63□□□□□ -0.39
UPF2-202ENST00000357604 FRMPD1Q5SYB0 1578 aa12.62□□□□□ -0.39
UPF2-202ENST00000357604 CAMSAP1Q5T5Y3 1602 aa12.62□□□□□ -0.39
UPF2-202ENST00000357604 RNF17Q9BXT8 1623 aaKnown RBP12.62□□□□□ -0.39
UPF2-202ENST00000357604 IDI1Q13907 227 aa12.62□□□□□ -0.39
UPF2-202ENST00000357604 TMC1Q8TDI8 760 aa12.61□□□□□ -0.39
UPF2-202ENST00000357604 EFCAB6Q5THR3 1501 aa12.61□□□□□ -0.39
UPF2-202ENST00000357604 IQGAP3Q86VI3 1631 aa12.61□□□□□ -0.39
UPF2-202ENST00000357604 EVC2Q86UK5 1308 aa12.6□□□□□ -0.39
UPF2-202ENST00000357604 BCORL1Q5H9F3 1711 aa12.6□□□□□ -0.39
UPF2-202ENST00000357604 NCKAP5LQ9HCH0 1330 aa12.6□□□□□ -0.39
UPF2-202ENST00000357604 MADDQ8WXG6 1647 aa12.59□□□□□ -0.39
UPF2-202ENST00000357604 COL17A1Q9UMD9 1497 aaPredicted RBP12.59□□□□□ -0.39
UPF2-202ENST00000357604 PSME1Q06323 249 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms