RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RNF17Q9BXT8 1623 aaKnown RBP28.54■■■□□ 2.16
CLN3-202ENST00000355477 EIF2AK4Q9P2K8 1649 aaKnown RBP28.54■■■□□ 2.16
CLN3-202ENST00000355477 KDM5DQ9BY66 1539 aa28.53■■■□□ 2.16
CLN3-202ENST00000355477 DUOX2Q9NRD8 1548 aa28.53■■■□□ 2.16
CLN3-202ENST00000355477 WASHC2CQ9Y4E1 1318 aa28.52■■■□□ 2.16
CLN3-202ENST00000355477 FAM135AQ9P2D6 1515 aa28.51■■■□□ 2.15
CLN3-202ENST00000355477 RRP7BPQ9NSQ0 103 aa28.5■■■□□ 2.15
CLN3-202ENST00000355477 MYO3AQ8NEV4 1616 aa28.5■■■□□ 2.15
CLN3-202ENST00000355477 KIF15Q9NS87 1388 aa28.5■■■□□ 2.15
CLN3-202ENST00000355477 MROH1Q8NDA8 1641 aa28.48■■■□□ 2.15
CLN3-202ENST00000355477 CHIC2Q9UKJ5 165 aa28.48■■■□□ 2.15
CLN3-202ENST00000355477 FAM50AQ14320 339 aaKnown RBP28.47■■■□□ 2.15
CLN3-202ENST00000355477 FBXO31Q5XUX0 539 aaPredicted RBP28.47■■■□□ 2.15
CLN3-202ENST00000355477 ZNF142P52746 1687 aaPredicted RBP28.46■■■□□ 2.15
CLN3-202ENST00000355477 ILDR1Q86SU0 546 aaPredicted RBP28.46■■■□□ 2.15
CLN3-202ENST00000355477 PPARGC1BQ86YN6 1023 aaKnown RBP28.46■■■□□ 2.15
CLN3-202ENST00000355477 PZPP20742 1482 aa28.44■■■□□ 2.14
CLN3-202ENST00000355477 ABCC3O15438 1527 aa28.43■■■□□ 2.14
CLN3-202ENST00000355477 ZC3H13Q5T200 1668 aaKnown RBP28.42■■■□□ 2.14
CLN3-202ENST00000355477 CEP170BQ9Y4F5 1589 aaPredicted RBP28.42■■■□□ 2.14
CLN3-202ENST00000355477 CEP152O94986 1710 aa28.42■■■□□ 2.14
CLN3-202ENST00000355477 CAMSAP1Q5T5Y3 1602 aa28.42■■■□□ 2.14
CLN3-202ENST00000355477 ERBINQ96RT1 1412 aa28.41■■■□□ 2.14
CLN3-202ENST00000355477 CFAP65Q6ZU64 1925 aaKnown RBP28.41■■■□□ 2.14
CLN3-202ENST00000355477 ANKRD30AQ9BXX3 1397 aa28.4■■■□□ 2.14
CLN3-202ENST00000355477 NCOA1Q15788 1441 aa28.4■■■□□ 2.14
CLN3-202ENST00000355477 DMRT2Q9Y5R5 561 aa28.38■■■□□ 2.13
CLN3-202ENST00000355477 TNRQ92752 1358 aa28.37■■■□□ 2.13
CLN3-202ENST00000355477 ADGRL2O95490 1459 aa28.36■■■□□ 2.13
CLN3-202ENST00000355477 DEPDC5O75140 1603 aa28.36■■■□□ 2.13
CLN3-202ENST00000355477 A2ML1A8K2U0 1454 aa28.34■■■□□ 2.13
CLN3-202ENST00000355477 PRDM15P57071 1507 aaPredicted RBP28.34■■■□□ 2.13
CLN3-202ENST00000355477 PTPRTO14522 1441 aa28.33■■■□□ 2.13
CLN3-202ENST00000355477 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.31■■■□□ 2.12
CLN3-202ENST00000355477 NCKAP5LQ9HCH0 1330 aa28.31■■■□□ 2.12
CLN3-202ENST00000355477 SPATA31D1Q6ZQQ2 1576 aa28.28■■■□□ 2.12
CLN3-202ENST00000355477 PLA2R1Q13018 1463 aa28.27■■■□□ 2.12
CLN3-202ENST00000355477 ERVK-7P63135 1459 aa28.26■■■□□ 2.11
CLN3-202ENST00000355477 NLRP1Q9C000 1473 aa28.24■■■□□ 2.11
CLN3-202ENST00000355477 FBXO41Q8TF61 875 aa28.24■■■□□ 2.11
CLN3-202ENST00000355477 CERKQ8TCT0 537 aa28.23■■■□□ 2.11
CLN3-202ENST00000355477 VWDEQ8N2E2 1590 aa28.23■■■□□ 2.11
CLN3-202ENST00000355477 PKD2Q13563 968 aa28.22■■■□□ 2.11
CLN3-202ENST00000355477 KANK1Q14678 1352 aa28.22■■■□□ 2.11
CLN3-202ENST00000355477 ARHGAP31Q2M1Z3 1444 aa28.21■■■□□ 2.11
CLN3-202ENST00000355477 ANKRD50Q9ULJ7 1429 aa28.21■■■□□ 2.11
CLN3-202ENST00000355477 UGGT1Q9NYU2 1555 aa28.2■■■□□ 2.1
CLN3-202ENST00000355477 POLR1AO95602 1720 aaPredicted RBP28.19■■■□□ 2.1
CLN3-202ENST00000355477 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.19■■■□□ 2.1
CLN3-202ENST00000355477 ITGAEP38570 1179 aa28.18■■■□□ 2.1
CLN3-202ENST00000355477 LMTK2Q8IWU2 1503 aa28.18■■■□□ 2.1
CLN3-202ENST00000355477 THEMISQ8N1K5 641 aaPredicted RBP28.17■■■□□ 2.1
CLN3-202ENST00000355477 ROCK1Q13464 1354 aa28.16■■■□□ 2.1
CLN3-202ENST00000355477 LTBP4Q8N2S1 1624 aa28.14■■■□□ 2.1
CLN3-202ENST00000355477 NEURL4Q96JN8 1562 aa28.13■■■□□ 2.09
CLN3-202ENST00000355477 UBR1Q8IWV7 1749 aa28.12■■■□□ 2.09
CLN3-202ENST00000355477 RRBP1Q9P2E9 1410 aaKnown RBP28.1■■■□□ 2.09
CLN3-202ENST00000355477 EFCAB6Q5THR3 1501 aa28.1■■■□□ 2.09
CLN3-202ENST00000355477 ANKLE2Q86XL3 938 aa28.09■■■□□ 2.09
CLN3-202ENST00000355477 UNC13BO14795 1591 aa28.08■■■□□ 2.09
CLN3-202ENST00000355477 ZNF335Q9H4Z2 1342 aaPredicted RBP28.08■■■□□ 2.09
CLN3-202ENST00000355477 PIK3C2BO00750 1634 aa28.06■■■□□ 2.08
CLN3-202ENST00000355477 SYNMO15061 1565 aa28.05■■■□□ 2.08
CLN3-202ENST00000355477 TET3O43151 1660 aa28.04■■■□□ 2.08
CLN3-202ENST00000355477 GCC2Q8IWJ2 1684 aa28.02■■■□□ 2.08
CLN3-202ENST00000355477 MED14O60244 1454 aa28.02■■■□□ 2.08
CLN3-202ENST00000355477 NOS1P29475 1434 aa28.01■■■□□ 2.08
CLN3-202ENST00000355477 IDI1Q13907 227 aa28■■■□□ 2.07
CLN3-202ENST00000355477 NPHP4O75161 1426 aaPredicted RBP27.99■■■□□ 2.07
CLN3-202ENST00000355477 IQGAP1P46940 1657 aa27.98■■■□□ 2.07
CLN3-202ENST00000355477 IQGAP3Q86VI3 1631 aa27.98■■■□□ 2.07
CLN3-202ENST00000355477 RPRD2Q5VT52 1461 aaKnown RBP27.97■■■□□ 2.07
CLN3-202ENST00000355477 E9PCH4 1651 aa27.97■■■□□ 2.07
CLN3-202ENST00000355477 KDM5AP29375 1690 aaKnown RBP27.96■■■□□ 2.07
CLN3-202ENST00000355477 SLIT1O75093 1534 aa27.96■■■□□ 2.07
CLN3-202ENST00000355477 ARHGAP23Q9P227 1491 aa27.95■■■□□ 2.07
CLN3-202ENST00000355477 LTKP29376 864 aa27.95■■■□□ 2.06
CLN3-202ENST00000355477 NUP155O75694 1391 aa27.94■■■□□ 2.06
CLN3-202ENST00000355477 IQSEC2Q5JU85 1478 aa27.92■■■□□ 2.06
CLN3-202ENST00000355477 SCAF11Q99590 1463 aaKnown RBP27.92■■■□□ 2.06
CLN3-202ENST00000355477 STAG3Q9UJ98 1225 aa27.92■■■□□ 2.06
CLN3-202ENST00000355477 TXNDC2Q86VQ3 553 aa27.91■■■□□ 2.06
CLN3-202ENST00000355477 MYO5BQ9ULV0 1848 aa27.9■■■□□ 2.06
CLN3-202ENST00000355477 SLC52A1Q9NWF4 448 aa27.9■■■□□ 2.06
CLN3-202ENST00000355477 TMEM2Q9UHN6 1383 aa27.89■■■□□ 2.06
CLN3-202ENST00000355477 NAIPQ13075 1403 aa27.88■■■□□ 2.05
CLN3-202ENST00000355477 ADGRB3O60242 1522 aa27.87■■■□□ 2.05
CLN3-202ENST00000355477 STRCP1A6NGW2 1772 aa27.86■■■□□ 2.05
CLN3-202ENST00000355477 EID1Q9Y6B2 187 aa27.86■■■□□ 2.05
CLN3-202ENST00000355477 CPS1P31327 1500 aa27.83■■■□□ 2.05
CLN3-202ENST00000355477 TMEM131LA2VDJ0 1609 aa27.81■■■□□ 2.04
CLN3-202ENST00000355477 HFM1A2PYH4 1435 aa27.78■■■□□ 2.04
CLN3-202ENST00000355477 SPHKAPQ2M3C7 1700 aa27.75■■■□□ 2.03
CLN3-202ENST00000355477 UBAP1LF5GYI3 381 aa27.75■■■□□ 2.03
CLN3-202ENST00000355477 CHGAP10645 457 aaKnown RBP27.73■■■□□ 2.03
CLN3-202ENST00000355477 ZFYVE9O95405 1425 aa27.73■■■□□ 2.03
CLN3-202ENST00000355477 RIMS2Q9UQ26 1411 aa27.7■■■□□ 2.03
CLN3-202ENST00000355477 LRRC7Q96NW7 1537 aa27.7■■■□□ 2.02
CLN3-202ENST00000355477 SLC26A8Q96RN1 970 aa27.69■■■□□ 2.02
CLN3-202ENST00000355477 TRIM52Q96A61 297 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms