RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 FAM135AQ9P2D6 1515 aa12.22□□□□□ -0.45
TRIM55-204ENST00000353317 ZNF518AQ6AHZ1 1483 aa12.21□□□□□ -0.45
TRIM55-204ENST00000353317 CFAP74Q9C0B2 1584 aa12.21□□□□□ -0.45
TRIM55-204ENST00000353317 NEO1Q92859 1461 aa12.21□□□□□ -0.45
TRIM55-204ENST00000353317 RICTORQ6R327 1708 aa12.21□□□□□ -0.46
TRIM55-204ENST00000353317 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
TRIM55-204ENST00000353317 ERBINQ96RT1 1412 aa12.2□□□□□ -0.46
TRIM55-204ENST00000353317 FRMPD1Q5SYB0 1578 aa12.19□□□□□ -0.46
TRIM55-204ENST00000353317 MAGI2Q86UL8 1455 aa12.18□□□□□ -0.46
TRIM55-204ENST00000353317 IQGAP3Q86VI3 1631 aa12.18□□□□□ -0.46
TRIM55-204ENST00000353317 ABCA6Q8N139 1617 aa12.18□□□□□ -0.46
TRIM55-204ENST00000353317 RPRD2Q5VT52 1461 aaKnown RBP12.18□□□□□ -0.46
TRIM55-204ENST00000353317 TONSLQ96HA7 1378 aa12.17□□□□□ -0.46
TRIM55-204ENST00000353317 L3MBTL2Q969R5 705 aa12.17□□□□□ -0.46
TRIM55-204ENST00000353317 DHX29Q7Z478 1369 aaKnown RBP12.17□□□□□ -0.46
TRIM55-204ENST00000353317 MLH3Q9UHC1 1453 aa12.17□□□□□ -0.46
TRIM55-204ENST00000353317 COL17A1Q9UMD9 1497 aaPredicted RBP12.17□□□□□ -0.46
TRIM55-204ENST00000353317 TIMELESSQ9UNS1 1208 aa12.17□□□□□ -0.46
TRIM55-204ENST00000353317 HECW2Q9P2P5 1572 aa12.17□□□□□ -0.46
TRIM55-204ENST00000353317 MROH1Q8NDA8 1641 aa12.16□□□□□ -0.46
TRIM55-204ENST00000353317 PLA2R1Q13018 1463 aa12.16□□□□□ -0.46
TRIM55-204ENST00000353317 KIF3BO15066 747 aa12.16□□□□□ -0.46
TRIM55-204ENST00000353317 DEPDC5O75140 1603 aa12.16□□□□□ -0.46
TRIM55-204ENST00000353317 YEATS2Q9ULM3 1422 aa12.16□□□□□ -0.46
TRIM55-204ENST00000353317 TEX14Q8IWB6 1497 aa12.14□□□□□ -0.47
TRIM55-204ENST00000353317 A2MP01023 1474 aa12.13□□□□□ -0.47
TRIM55-204ENST00000353317 E9PCH4 1651 aa12.13□□□□□ -0.47
TRIM55-204ENST00000353317 DIP2CQ9Y2E4 1556 aa12.13□□□□□ -0.47
TRIM55-204ENST00000353317 DDX10Q13206 875 aaKnown RBP12.13□□□□□ -0.47
TRIM55-204ENST00000353317 NBPF8Q3BBV2 869 aa12.12□□□□□ -0.47
TRIM55-204ENST00000353317 HIRIP3Q9BW71 556 aaPredicted RBP12.12□□□□□ -0.47
TRIM55-204ENST00000353317 VWDEQ8N2E2 1590 aa12.12□□□□□ -0.47
TRIM55-204ENST00000353317 TSHZ2Q9NRE2 1034 aa12.11□□□□□ -0.47
TRIM55-204ENST00000353317 CFAP65Q6ZU64 1925 aaKnown RBP12.11□□□□□ -0.47
TRIM55-204ENST00000353317 EIF2AK4Q9P2K8 1649 aaKnown RBP12.11□□□□□ -0.47
TRIM55-204ENST00000353317 SIGLEC1Q9BZZ2 1709 aa12.1□□□□□ -0.47
TRIM55-204ENST00000353317 PRDM15P57071 1507 aaPredicted RBP12.1□□□□□ -0.47
TRIM55-204ENST00000353317 CEP152O94986 1710 aa12.09□□□□□ -0.47
TRIM55-204ENST00000353317 GGT6Q6P531 493 aa12.08□□□□□ -0.47
TRIM55-204ENST00000353317 RNF17Q9BXT8 1623 aaKnown RBP12.08□□□□□ -0.48
TRIM55-204ENST00000353317 ZMYM4Q5VZL5 1548 aa12.07□□□□□ -0.48
TRIM55-204ENST00000353317 TET3O43151 1660 aa12.07□□□□□ -0.48
TRIM55-204ENST00000353317 ATP10AO60312 1499 aa12.07□□□□□ -0.48
TRIM55-204ENST00000353317 BCORL1Q5H9F3 1711 aa12.06□□□□□ -0.48
TRIM55-204ENST00000353317 SPHKAPQ2M3C7 1700 aa12.04□□□□□ -0.48
TRIM55-204ENST00000353317 RGL3Q3MIN7 710 aa12.04□□□□□ -0.48
TRIM55-204ENST00000353317 UGGT1Q9NYU2 1555 aa12.04□□□□□ -0.48
TRIM55-204ENST00000353317 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
TRIM55-204ENST00000353317 BCANQ96GW7 911 aa12.04□□□□□ -0.48
TRIM55-204ENST00000353317 KDM2AQ9Y2K7 1162 aa12.03□□□□□ -0.48
TRIM55-204ENST00000353317 PTPRTO14522 1441 aa12.03□□□□□ -0.48
TRIM55-204ENST00000353317 FKBP8Q14318 412 aa12.03□□□□□ -0.48
TRIM55-204ENST00000353317 CLTCL1P53675 1640 aa12.02□□□□□ -0.48
TRIM55-204ENST00000353317 DCAF11Q8TEB1 546 aa12.02□□□□□ -0.49
TRIM55-204ENST00000353317 KANK1Q14678 1352 aa12.02□□□□□ -0.49
TRIM55-204ENST00000353317 EFCAB6Q5THR3 1501 aa12.02□□□□□ -0.49
TRIM55-204ENST00000353317 ZNF326Q5BKZ1 582 aaKnown RBP12.02□□□□□ -0.49
TRIM55-204ENST00000353317 ABCC3O15438 1527 aa12.01□□□□□ -0.49
TRIM55-204ENST00000353317 LMTK2Q8IWU2 1503 aa12.01□□□□□ -0.49
TRIM55-204ENST00000353317 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
TRIM55-204ENST00000353317 NPATQ14207 1427 aa12.01□□□□□ -0.49
TRIM55-204ENST00000353317 TRPM2O94759 1503 aa12□□□□□ -0.49
TRIM55-204ENST00000353317 WASHC2CQ9Y4E1 1318 aa12□□□□□ -0.49
TRIM55-204ENST00000353317 CCER2I3L3R5 266 aa12□□□□□ -0.49
TRIM55-204ENST00000353317 SPATA31E1Q6ZUB1 1445 aa11.99□□□□□ -0.49
TRIM55-204ENST00000353317 ANP32CO43423 234 aa11.99□□□□□ -0.49
TRIM55-204ENST00000353317 HSPA5P11021 654 aaKnown RBP11.99□□□□□ -0.49
TRIM55-204ENST00000353317 CAMSAP1Q5T5Y3 1602 aa11.98□□□□□ -0.49
TRIM55-204ENST00000353317 UHRF1BP1Q6BDS2 1440 aa11.97□□□□□ -0.49
TRIM55-204ENST00000353317 C11orf95C9JLR9 678 aaPredicted RBP11.96□□□□□ -0.49
TRIM55-204ENST00000353317 ARHGEF40Q8TER5 1519 aa11.96□□□□□ -0.49
TRIM55-204ENST00000353317 MLECQ14165 292 aa11.95□□□□□ -0.5
TRIM55-204ENST00000353317 REREQ9P2R6 1566 aa11.95□□□□□ -0.5
TRIM55-204ENST00000353317 MROH2AA6NES4 1674 aa11.95□□□□□ -0.5
TRIM55-204ENST00000353317 NBPF1Q3BBV0 1214 aa11.95□□□□□ -0.5
TRIM55-204ENST00000353317 AGLP35573 1532 aa11.94□□□□□ -0.5
TRIM55-204ENST00000353317 FBXO31Q5XUX0 539 aaPredicted RBP11.94□□□□□ -0.5
TRIM55-204ENST00000353317 PRAG1Q86YV5 1406 aa11.94□□□□□ -0.5
TRIM55-204ENST00000353317 SYNMO15061 1565 aa11.94□□□□□ -0.5
TRIM55-204ENST00000353317 ANP32EQ9BTT0 268 aa11.93□□□□□ -0.5
TRIM55-204ENST00000353317 TRPM1Q7Z4N2 1603 aa11.92□□□□□ -0.5
TRIM55-204ENST00000353317 NEFLP07196 543 aa11.92□□□□□ -0.5
TRIM55-204ENST00000353317 EIF4G2P78344 907 aaKnown RBP eCLIP11.92□□□□□ -0.5
TRIM55-204ENST00000353317 KIF1BO60333 1816 aa11.92□□□□□ -0.5
TRIM55-204ENST00000353317 NOS1P29475 1434 aa11.92□□□□□ -0.5
TRIM55-204ENST00000353317 CLTCQ00610 1675 aaKnown RBP11.92□□□□□ -0.5
TRIM55-204ENST00000353317 RALGAPBQ86X10 1494 aa11.92□□□□□ -0.5
TRIM55-204ENST00000353317 ZC3H13Q5T200 1668 aaKnown RBP11.91□□□□□ -0.5
TRIM55-204ENST00000353317 WASHC2AQ641Q2 1341 aa11.91□□□□□ -0.5
TRIM55-204ENST00000353317 ARHGAP31Q2M1Z3 1444 aa11.9□□□□□ -0.5
TRIM55-204ENST00000353317 PREX1Q8TCU6 1659 aa11.9□□□□□ -0.5
TRIM55-204ENST00000353317 MYO5BQ9ULV0 1848 aa11.9□□□□□ -0.5
TRIM55-204ENST00000353317 PIK3C2BO00750 1634 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 IDI1Q13907 227 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 MADDQ8WXG6 1647 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 IFT172Q9UG01 1749 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 CNTLNQ9NXG0 1405 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 USP47Q96K76 1375 aa11.89□□□□□ -0.51
TRIM55-204ENST00000353317 ADGRF5Q8IZF2 1346 aa11.88□□□□□ -0.51
TRIM55-204ENST00000353317 CARD11Q9BXL7 1154 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms