RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 MAGI2Q86UL8 1455 aa30.41■■■□□ 2.46
UPF3A-201ENST00000351487 CARD11Q9BXL7 1154 aa30.41■■■□□ 2.46
UPF3A-201ENST00000351487 TRPM1Q7Z4N2 1603 aa30.4■■■□□ 2.46
UPF3A-201ENST00000351487 CCDC144AA2RUR9 1427 aa30.39■■■□□ 2.46
UPF3A-201ENST00000351487 PLCH2O75038 1416 aa30.39■■■□□ 2.46
UPF3A-201ENST00000351487 ZBED9Q6R2W3 1325 aa30.39■■■□□ 2.46
UPF3A-201ENST00000351487 ERBINQ96RT1 1412 aa30.37■■■□□ 2.45
UPF3A-201ENST00000351487 PLA2R1Q13018 1463 aa30.36■■■□□ 2.45
UPF3A-201ENST00000351487 ABCC1P33527 1531 aa30.36■■■□□ 2.45
UPF3A-201ENST00000351487 DCAF11Q8TEB1 546 aa30.36■■■□□ 2.45
UPF3A-201ENST00000351487 FAM9BQ8IZU0 186 aa30.35■■■□□ 2.45
UPF3A-201ENST00000351487 E9PCH4 1651 aa30.35■■■□□ 2.45
UPF3A-201ENST00000351487 PRAG1Q86YV5 1406 aa30.35■■■□□ 2.45
UPF3A-201ENST00000351487 ATP10AO60312 1499 aa30.32■■■□□ 2.44
UPF3A-201ENST00000351487 LAMC1P11047 1609 aa30.32■■■□□ 2.44
UPF3A-201ENST00000351487 KDM2AQ9Y2K7 1162 aa30.31■■■□□ 2.44
UPF3A-201ENST00000351487 ARAP3Q8WWN8 1544 aa30.29■■■□□ 2.44
UPF3A-201ENST00000351487 A2MP01023 1474 aa30.28■■■□□ 2.44
UPF3A-201ENST00000351487 ST20-MTHFSA0A0A6YYL1 179 aa30.27■■■□□ 2.44
UPF3A-201ENST00000351487 GPRASP1Q5JY77 1395 aa30.26■■■□□ 2.43
UPF3A-201ENST00000351487 ERICH6BQ5W0A0 696 aa30.26■■■□□ 2.43
UPF3A-201ENST00000351487 EFCAB2Q5VUJ9 269 aa30.25■■■□□ 2.43
UPF3A-201ENST00000351487 POLR3GLQ9BT43 218 aa30.25■■■□□ 2.43
UPF3A-201ENST00000351487 EIF2AK4Q9P2K8 1649 aaKnown RBP30.25■■■□□ 2.43
UPF3A-201ENST00000351487 KTN1Q86UP2 1357 aaKnown RBP30.21■■■□□ 2.43
UPF3A-201ENST00000351487 PRDM15P57071 1507 aaPredicted RBP30.21■■■□□ 2.43
UPF3A-201ENST00000351487 TRAPPC8Q9Y2L5 1435 aa30.2■■■□□ 2.42
UPF3A-201ENST00000351487 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.19■■■□□ 2.425e-8■■■■□ 20.3
UPF3A-201ENST00000351487 RTEL1-TNFRSF6BF6WH68 1400 aa30.17■■■□□ 2.42
UPF3A-201ENST00000351487 ZFYVE16Q7Z3T8 1539 aa30.16■■■□□ 2.42
UPF3A-201ENST00000351487 MYT1Q01538 1121 aa30.15■■■□□ 2.42
UPF3A-201ENST00000351487 RNF17Q9BXT8 1623 aaKnown RBP30.13■■■□□ 2.41
UPF3A-201ENST00000351487 DEPDC5O75140 1603 aa30.11■■■□□ 2.41
UPF3A-201ENST00000351487 SMG6Q86US8 1419 aaKnown RBP30.11■■■□□ 2.41
UPF3A-201ENST00000351487 COL17A1Q9UMD9 1497 aaPredicted RBP30.11■■■□□ 2.41
UPF3A-201ENST00000351487 RGL3Q3MIN7 710 aa30.11■■■□□ 2.41
UPF3A-201ENST00000351487 ABCA9Q8IUA7 1624 aa30.1■■■□□ 2.41
UPF3A-201ENST00000351487 IRX6P78412 446 aaPredicted RBP30.09■■■□□ 2.41
UPF3A-201ENST00000351487 PNISRQ8TF01 805 aaKnown RBP30.09■■■□□ 2.41
UPF3A-201ENST00000351487 WDR7Q9Y4E6 1490 aa30.09■■■□□ 2.41
UPF3A-201ENST00000351487 BRD4O60885 1362 aaPredicted RBP30.09■■■□□ 2.41
UPF3A-201ENST00000351487 RALBP1Q15311 655 aa30.08■■■□□ 2.41
UPF3A-201ENST00000351487 NBPF1Q3BBV0 1214 aa30.08■■■□□ 2.41
UPF3A-201ENST00000351487 MYBBP1AQ9BQG0 1328 aaKnown RBP30.06■■■□□ 2.4
UPF3A-201ENST00000351487 LRPPRCP42704 1394 aaKnown RBP30.06■■■□□ 2.4
UPF3A-201ENST00000351487 TRPM2O94759 1503 aa30.06■■■□□ 2.4
UPF3A-201ENST00000351487 INO80Q9ULG1 1556 aaPredicted RBP30.06■■■□□ 2.4
UPF3A-201ENST00000351487 SPAG9O60271 1321 aaKnown RBP30.05■■■□□ 2.4
UPF3A-201ENST00000351487 PPP4R2Q9NY27 417 aa30.04■■■□□ 2.4
UPF3A-201ENST00000351487 CEP152O94986 1710 aa30.04■■■□□ 2.4
UPF3A-201ENST00000351487 SPHKAPQ2M3C7 1700 aa30.04■■■□□ 2.4
UPF3A-201ENST00000351487 TMC1Q8TDI8 760 aa30.03■■■□□ 2.4
UPF3A-201ENST00000351487 CNGB1Q14028 1251 aaPredicted RBP30.02■■■□□ 2.4
UPF3A-201ENST00000351487 TET3O43151 1660 aa30.01■■■□□ 2.4
UPF3A-201ENST00000351487 MADDQ8WXG6 1647 aa30.01■■■□□ 2.39
UPF3A-201ENST00000351487 PARD3Q8TEW0 1356 aa30.01■■■□□ 2.39
UPF3A-201ENST00000351487 ATP7AQ04656 1500 aa30■■■□□ 2.39
UPF3A-201ENST00000351487 TESK2Q96S53 571 aa30■■■□□ 2.39
UPF3A-201ENST00000351487 VWDEQ8N2E2 1590 aa29.99■■■□□ 2.39
UPF3A-201ENST00000351487 PTPRTO14522 1441 aa29.98■■■□□ 2.39
UPF3A-201ENST00000351487 FANCAO15360 1455 aa29.98■■■□□ 2.39
UPF3A-201ENST00000351487 NUDCQ9Y266 331 aa29.98■■■□□ 2.39
UPF3A-201ENST00000351487 RBM19Q9Y4C8 960 aaKnown RBP29.97■■■□□ 2.39
UPF3A-201ENST00000351487 AFAP1Q8N556 730 aa29.96■■■□□ 2.39
UPF3A-201ENST00000351487 DISP3Q9P2K9 1392 aa29.96■■■□□ 2.39
UPF3A-201ENST00000351487 IQGAP1P46940 1657 aa29.95■■■□□ 2.39
UPF3A-201ENST00000351487 CLTCL1P53675 1640 aa29.94■■■□□ 2.38
UPF3A-201ENST00000351487 WASHC2CQ9Y4E1 1318 aa29.94■■■□□ 2.38
UPF3A-201ENST00000351487 PER1O15534 1290 aaPredicted RBP29.94■■■□□ 2.38
UPF3A-201ENST00000351487 RNF123Q5XPI4 1314 aa29.93■■■□□ 2.38
UPF3A-201ENST00000351487 NEURL4Q96JN8 1562 aa29.91■■■□□ 2.38
UPF3A-201ENST00000351487 NLRP13Q86W25 1043 aa29.9■■■□□ 2.38
UPF3A-201ENST00000351487 STAC3Q96MF2 364 aa29.9■■■□□ 2.38
UPF3A-201ENST00000351487 ADGRL1O94910 1474 aa29.88■■■□□ 2.37
UPF3A-201ENST00000351487 TMF1P82094 1093 aa29.87■■■□□ 2.37
UPF3A-201ENST00000351487 MROH1Q8NDA8 1641 aa29.86■■■□□ 2.37
UPF3A-201ENST00000351487 KANK1Q14678 1352 aa29.85■■■□□ 2.37
UPF3A-201ENST00000351487 SCAPERQ9BY12 1400 aa29.85■■■□□ 2.37
UPF3A-201ENST00000351487 KIAA1210Q9ULL0 1709 aa29.84■■■□□ 2.37
UPF3A-201ENST00000351487 ZMYM4Q5VZL5 1548 aa29.83■■■□□ 2.37
UPF3A-201ENST00000351487 ASXL2Q76L83 1435 aa29.82■■■□□ 2.36
UPF3A-201ENST00000351487 INSRP06213 1382 aa29.81■■■□□ 2.36
UPF3A-201ENST00000351487 KIDINS220Q9ULH0 1771 aa29.78■■■□□ 2.36
UPF3A-201ENST00000351487 SCAF11Q99590 1463 aaKnown RBP29.78■■■□□ 2.36
UPF3A-201ENST00000351487 PANK3Q9H999 370 aa29.76■■■□□ 2.36
UPF3A-201ENST00000351487 B4GALNT3Q6L9W6 998 aa29.76■■■□□ 2.35
UPF3A-201ENST00000351487 SYNMO15061 1565 aa29.75■■■□□ 2.35
UPF3A-201ENST00000351487 EFCAB6Q5THR3 1501 aa29.75■■■□□ 2.35
UPF3A-201ENST00000351487 KIF3BO15066 747 aa29.72■■■□□ 2.35
UPF3A-201ENST00000351487 MYOM2P54296 1465 aa29.72■■■□□ 2.35
UPF3A-201ENST00000351487 KIF1BO60333 1816 aa29.71■■■□□ 2.35
UPF3A-201ENST00000351487 LMTK2Q8IWU2 1503 aa29.71■■■□□ 2.35
UPF3A-201ENST00000351487 IFT172Q9UG01 1749 aa29.71■■■□□ 2.35
UPF3A-201ENST00000351487 BLMP54132 1417 aaPredicted RBP29.71■■■□□ 2.35
UPF3A-201ENST00000351487 ZNF518AQ6AHZ1 1483 aa29.71■■■□□ 2.35
UPF3A-201ENST00000351487 MAP3K4Q9Y6R4 1608 aa29.7■■■□□ 2.35
UPF3A-201ENST00000351487 CFAP74Q9C0B2 1584 aa29.69■■■□□ 2.34
UPF3A-201ENST00000351487 PPRC1Q5VV67 1664 aaKnown RBP29.69■■■□□ 2.34
UPF3A-201ENST00000351487 ANP32EQ9BTT0 268 aa29.68■■■□□ 2.34
UPF3A-201ENST00000351487 CC2D1BQ5T0F9 858 aaKnown RBP29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms