RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 UBR1Q8IWV7 1749 aa12.13□□□□□ -0.47
ZNF540-202ENST00000343599 CSRNP3Q8WYN3 585 aa12.13□□□□□ -0.47
ZNF540-202ENST00000343599 PLEKHD1A6NEE1 506 aa12.13□□□□□ -0.47
ZNF540-202ENST00000343599 CAMSAP1Q5T5Y3 1602 aa12.13□□□□□ -0.47
ZNF540-202ENST00000343599 IQGAP3Q86VI3 1631 aa12.13□□□□□ -0.47
ZNF540-202ENST00000343599 GCC2Q8IWJ2 1684 aa12.12□□□□□ -0.47
ZNF540-202ENST00000343599 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
ZNF540-202ENST00000343599 MROH1Q8NDA8 1641 aa12.11□□□□□ -0.47
ZNF540-202ENST00000343599 A2MP01023 1474 aa12.11□□□□□ -0.47
ZNF540-202ENST00000343599 GPATCH8Q9UKJ3 1502 aaKnown RBP12.1□□□□□ -0.47
ZNF540-202ENST00000343599 RPRD2Q5VT52 1461 aaKnown RBP12.1□□□□□ -0.47
ZNF540-202ENST00000343599 ALKQ9UM73 1620 aa12.09□□□□□ -0.47
ZNF540-202ENST00000343599 CERKQ8TCT0 537 aa12.09□□□□□ -0.47
ZNF540-202ENST00000343599 MBD5Q9P267 1494 aa12.09□□□□□ -0.47
ZNF540-202ENST00000343599 NKTRP30414 1462 aaKnown RBP12.08□□□□□ -0.48
ZNF540-202ENST00000343599 SHPRHQ149N8 1683 aa12.08□□□□□ -0.48
ZNF540-202ENST00000343599 PIK3C2BO00750 1634 aa12.07□□□□□ -0.48
ZNF540-202ENST00000343599 DUOX2Q9NRD8 1548 aa12.07□□□□□ -0.48
ZNF540-202ENST00000343599 XIRP1Q702N8 1843 aaKnown RBP12.07□□□□□ -0.48
ZNF540-202ENST00000343599 CDK12Q9NYV4 1490 aaPredicted RBP12.06□□□□□ -0.48
ZNF540-202ENST00000343599 SETD1AO15047 1707 aaKnown RBP12.06□□□□□ -0.48
ZNF540-202ENST00000343599 ERBINQ96RT1 1412 aa12.06□□□□□ -0.48
ZNF540-202ENST00000343599 EFCAB6Q5THR3 1501 aa12.06□□□□□ -0.48
ZNF540-202ENST00000343599 CCDC141Q6ZP82 1450 aa12.05□□□□□ -0.48
ZNF540-202ENST00000343599 MED1Q15648 1581 aaPredicted RBP12.04□□□□□ -0.48
ZNF540-202ENST00000343599 FGD6Q6ZV73 1430 aa12.03□□□□□ -0.48
ZNF540-202ENST00000343599 UNC13BO14795 1591 aa12.03□□□□□ -0.48
ZNF540-202ENST00000343599 ADGRL2O95490 1459 aa12.03□□□□□ -0.48
ZNF540-202ENST00000343599 SYCP2Q9BX26 1530 aa12.01□□□□□ -0.49
ZNF540-202ENST00000343599 DHX29Q7Z478 1369 aaKnown RBP12.01□□□□□ -0.49
ZNF540-202ENST00000343599 AHDC1Q5TGY3 1603 aaPredicted RBP12□□□□□ -0.49
ZNF540-202ENST00000343599 TET3O43151 1660 aa11.99□□□□□ -0.49
ZNF540-202ENST00000343599 CEP152O94986 1710 aa11.98□□□□□ -0.49
ZNF540-202ENST00000343599 SOCS7O14512 581 aa11.98□□□□□ -0.49
ZNF540-202ENST00000343599 SPHKAPQ2M3C7 1700 aa11.98□□□□□ -0.49
ZNF540-202ENST00000343599 KCNA4P22459 653 aa11.97□□□□□ -0.49
ZNF540-202ENST00000343599 CHD2O14647 1828 aaKnown RBP11.97□□□□□ -0.49
ZNF540-202ENST00000343599 PIK3R4Q99570 1358 aa11.95□□□□□ -0.5
ZNF540-202ENST00000343599 ADGRB3O60242 1522 aa11.95□□□□□ -0.5
ZNF540-202ENST00000343599 STRCP1A6NGW2 1772 aa11.94□□□□□ -0.5
ZNF540-202ENST00000343599 DCCP43146 1447 aa11.94□□□□□ -0.5
ZNF540-202ENST00000343599 ACIN1Q9UKV3 1341 aaKnown RBP11.94□□□□□ -0.5
ZNF540-202ENST00000343599 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.94□□□□□ -0.5
ZNF540-202ENST00000343599 COL22A1Q8NFW1 1626 aaPredicted RBP11.94□□□□□ -0.5
ZNF540-202ENST00000343599 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.93□□□□□ -0.5
ZNF540-202ENST00000343599 ERVK-7P63135 1459 aa11.92□□□□□ -0.5
ZNF540-202ENST00000343599 NHSL1Q5SYE7 1610 aa11.91□□□□□ -0.5
ZNF540-202ENST00000343599 FAM135BQ49AJ0 1406 aa11.91□□□□□ -0.5
ZNF540-202ENST00000343599 ZMYM3Q14202 1370 aa11.89□□□□□ -0.51
ZNF540-202ENST00000343599 XRN1Q8IZH2 1706 aaKnown RBP11.88□□□□□ -0.51
ZNF540-202ENST00000343599 KNDC1Q76NI1 1749 aa11.88□□□□□ -0.51
ZNF540-202ENST00000343599 SETBP1Q9Y6X0 1596 aa11.86□□□□□ -0.51
ZNF540-202ENST00000343599 RAPGEF3O95398 923 aa11.85□□□□□ -0.51
ZNF540-202ENST00000343599 NOS1P29475 1434 aa11.84□□□□□ -0.51
ZNF540-202ENST00000343599 LRRC7Q96NW7 1537 aa11.84□□□□□ -0.51
ZNF540-202ENST00000343599 MARF1Q9Y4F3 1742 aaKnown RBP11.84□□□□□ -0.51
ZNF540-202ENST00000343599 NPHP4O75161 1426 aaPredicted RBP11.84□□□□□ -0.51
ZNF540-202ENST00000343599 PRKCSHP14314 528 aaPredicted RBP11.84□□□□□ -0.51
ZNF540-202ENST00000343599 HRCP23327 699 aa11.83□□□□□ -0.52
ZNF540-202ENST00000343599 TNRQ92752 1358 aa11.82□□□□□ -0.52
ZNF540-202ENST00000343599 MYOM3Q5VTT5 1437 aa11.82□□□□□ -0.52
ZNF540-202ENST00000343599 SCAF11Q99590 1463 aaKnown RBP11.81□□□□□ -0.52
ZNF540-202ENST00000343599 TMEM131LA2VDJ0 1609 aa11.8□□□□□ -0.52
ZNF540-202ENST00000343599 COL16A1Q07092 1604 aaPredicted RBP11.79□□□□□ -0.52
ZNF540-202ENST00000343599 LRP5O75197 1615 aa11.78□□□□□ -0.52
ZNF540-202ENST00000343599 TRPM2O94759 1503 aa11.78□□□□□ -0.52
ZNF540-202ENST00000343599 SUPT5HO00267 1087 aaKnown RBP11.77□□□□□ -0.53
ZNF540-202ENST00000343599 CCNB3Q8WWL7 1395 aa11.77□□□□□ -0.53
ZNF540-202ENST00000343599 ROCK1Q13464 1354 aa11.76□□□□□ -0.53
ZNF540-202ENST00000343599 RGPD3A6NKT7 1758 aaPredicted RBP11.75□□□□□ -0.53
ZNF540-202ENST00000343599 RGPD4Q7Z3J3 1758 aa11.75□□□□□ -0.53
ZNF540-202ENST00000343599 SPAG9O60271 1321 aaKnown RBP11.75□□□□□ -0.53
ZNF540-202ENST00000343599 KIF1AQ12756 1690 aa11.73□□□□□ -0.53
ZNF540-202ENST00000343599 ZFYVE9O95405 1425 aa11.72□□□□□ -0.53
ZNF540-202ENST00000343599 VPS8Q8N3P4 1428 aa11.72□□□□□ -0.53
ZNF540-202ENST00000343599 PHLPP1O60346 1717 aa11.72□□□□□ -0.53
ZNF540-202ENST00000343599 IFT172Q9UG01 1749 aa11.71□□□□□ -0.53
ZNF540-202ENST00000343599 THEMISQ8N1K5 641 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-202ENST00000343599 ROBO1Q9Y6N7 1651 aa11.7□□□□□ -0.54
ZNF540-202ENST00000343599 NEXMIFQ5QGS0 1516 aa11.7□□□□□ -0.54
ZNF540-202ENST00000343599 KCNH8Q96L42 1107 aa11.69□□□□□ -0.54
ZNF540-202ENST00000343599 MTUS2Q5JR59 1369 aa11.69□□□□□ -0.54
ZNF540-202ENST00000343599 PLEKHG1Q9ULL1 1385 aa11.69□□□□□ -0.54
ZNF540-202ENST00000343599 TTBK1Q5TCY1 1321 aaPredicted RBP11.69□□□□□ -0.54
ZNF540-202ENST00000343599 NWD2Q9ULI1 1742 aa11.69□□□□□ -0.54
ZNF540-202ENST00000343599 NRXN3Q9Y4C0 1643 aa11.66□□□□□ -0.54
ZNF540-202ENST00000343599 TOM1O60784 492 aa11.66□□□□□ -0.54
ZNF540-202ENST00000343599 NALCNQ8IZF0 1738 aa11.65□□□□□ -0.54
ZNF540-202ENST00000343599 E9PCH4 1651 aa11.64□□□□□ -0.55
ZNF540-202ENST00000343599 CDC42BPGQ6DT37 1551 aa11.63□□□□□ -0.55
ZNF540-202ENST00000343599 SETD5Q9C0A6 1442 aa11.63□□□□□ -0.55
ZNF540-202ENST00000343599 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.63□□□□□ -0.55
ZNF540-202ENST00000343599 MST1RQ04912 1400 aa11.63□□□□□ -0.55
ZNF540-202ENST00000343599 ADGRB2O60241 1585 aa11.62□□□□□ -0.55
ZNF540-202ENST00000343599 PTCH1Q13635 1447 aa11.62□□□□□ -0.55
ZNF540-202ENST00000343599 ARID4BQ4LE39 1312 aaPredicted RBP11.62□□□□□ -0.55
ZNF540-202ENST00000343599 KIF1BO60333 1816 aa11.62□□□□□ -0.55
ZNF540-202ENST00000343599 SPATA31A6Q5VVP1 1343 aa11.61□□□□□ -0.55
ZNF540-202ENST00000343599 NCBP3Q53F19 620 aaKnown RBP11.61□□□□□ -0.55
ZNF540-202ENST00000343599 TMEM2Q9UHN6 1383 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms