RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ZNF518AQ6AHZ1 1483 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 NEO1Q92859 1461 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 TSPOAP1O95153 1857 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 PKD2Q13563 968 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.01□□□□□ -1.45
MCF2-201ENST00000338585 ANKRD30BQ9BXX2 1392 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 ERBINQ96RT1 1412 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 KIDINS220Q9ULH0 1771 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 KDM5DQ9BY66 1539 aa6.01□□□□□ -1.45
MCF2-201ENST00000338585 ACIN1Q9UKV3 1341 aaKnown RBP6.01□□□□□ -1.45
MCF2-201ENST00000338585 UNC13BO14795 1591 aa6□□□□□ -1.45
MCF2-201ENST00000338585 KDM5CP41229 1560 aa6□□□□□ -1.45
MCF2-201ENST00000338585 PPRC1Q5VV67 1664 aaKnown RBP6□□□□□ -1.45
MCF2-201ENST00000338585 KIF13AQ9H1H9 1805 aa6□□□□□ -1.45
MCF2-201ENST00000338585 FAM135AQ9P2D6 1515 aa6□□□□□ -1.45
MCF2-201ENST00000338585 TONSLQ96HA7 1378 aa6□□□□□ -1.45
MCF2-201ENST00000338585 PLSCR2Q9NRY7 297 aa5.99□□□□□ -1.45
MCF2-201ENST00000338585 RICTORQ6R327 1708 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 MAGI2Q86UL8 1455 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 HECW2Q9P2P5 1572 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 MLH3Q9UHC1 1453 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 FRMPD1Q5SYB0 1578 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 DHX29Q7Z478 1369 aaKnown RBP5.98□□□□□ -1.45
MCF2-201ENST00000338585 KIF3BO15066 747 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 PPP1R15AO75807 674 aaPredicted RBP5.98□□□□□ -1.45
MCF2-201ENST00000338585 TIMELESSQ9UNS1 1208 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 IQGAP3Q86VI3 1631 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 ABCA6Q8N139 1617 aa5.98□□□□□ -1.45
MCF2-201ENST00000338585 A2MP01023 1474 aa5.97□□□□□ -1.45
MCF2-201ENST00000338585 RPRD2Q5VT52 1461 aaKnown RBP5.97□□□□□ -1.45
MCF2-201ENST00000338585 YEATS2Q9ULM3 1422 aa5.97□□□□□ -1.45
MCF2-201ENST00000338585 ZNF316A6NFI3 1004 aaPredicted RBP5.97□□□□□ -1.45
MCF2-201ENST00000338585 L3MBTL2Q969R5 705 aa5.97□□□□□ -1.45
MCF2-201ENST00000338585 TEX14Q8IWB6 1497 aa5.97□□□□□ -1.45
MCF2-201ENST00000338585 DEPDC5O75140 1603 aa5.96□□□□□ -1.45
MCF2-201ENST00000338585 MROH1Q8NDA8 1641 aa5.96□□□□□ -1.45
MCF2-201ENST00000338585 DIP2CQ9Y2E4 1556 aa5.96□□□□□ -1.45
MCF2-201ENST00000338585 COL17A1Q9UMD9 1497 aaPredicted RBP5.96□□□□□ -1.46
MCF2-201ENST00000338585 PLA2R1Q13018 1463 aa5.96□□□□□ -1.46
MCF2-201ENST00000338585 EIF2AK4Q9P2K8 1649 aaKnown RBP5.96□□□□□ -1.46
MCF2-201ENST00000338585 CHRDL2Q6WN34 429 aa5.95□□□□□ -1.46
MCF2-201ENST00000338585 DNAJC5Q9H3Z4 198 aa5.95□□□□□ -1.46
MCF2-201ENST00000338585 PRDM15P57071 1507 aaPredicted RBP5.95□□□□□ -1.46
MCF2-201ENST00000338585 VWDEQ8N2E2 1590 aa5.94□□□□□ -1.46
MCF2-201ENST00000338585 ZMYM4Q5VZL5 1548 aa5.94□□□□□ -1.46
MCF2-201ENST00000338585 E9PCH4 1651 aa5.94□□□□□ -1.46
MCF2-201ENST00000338585 GGT6Q6P531 493 aa5.94□□□□□ -1.46
MCF2-201ENST00000338585 RBM42Q9BTD8 480 aaKnown RBP5.94□□□□□ -1.46
MCF2-201ENST00000338585 RNF17Q9BXT8 1623 aaKnown RBP5.94□□□□□ -1.46
MCF2-201ENST00000338585 KANK1Q14678 1352 aa5.93□□□□□ -1.46
MCF2-201ENST00000338585 NBPF8Q3BBV2 869 aa5.93□□□□□ -1.46
MCF2-201ENST00000338585 CCDC144AA2RUR9 1427 aa5.93□□□□□ -1.46
MCF2-201ENST00000338585 TET3O43151 1660 aa5.93□□□□□ -1.46
MCF2-201ENST00000338585 TRHP20396 242 aaPredicted RBP5.93□□□□□ -1.46
MCF2-201ENST00000338585 HIRIP3Q9BW71 556 aaPredicted RBP5.93□□□□□ -1.46
MCF2-201ENST00000338585 CEP152O94986 1710 aa5.92□□□□□ -1.46
MCF2-201ENST00000338585 ATP10AO60312 1499 aa5.92□□□□□ -1.46
MCF2-201ENST00000338585 CNKSR2Q8WXI2 1034 aa5.92□□□□□ -1.46
MCF2-201ENST00000338585 BCORL1Q5H9F3 1711 aa5.92□□□□□ -1.46
MCF2-201ENST00000338585 EFCAB6Q5THR3 1501 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 ZNF326Q5BKZ1 582 aaKnown RBP5.91□□□□□ -1.46
MCF2-201ENST00000338585 SIGLEC1Q9BZZ2 1709 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 RGL3Q3MIN7 710 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 DIEXFQ68CQ4 756 aaKnown RBP5.91□□□□□ -1.46
MCF2-201ENST00000338585 WASHC2CQ9Y4E1 1318 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 ABCC3O15438 1527 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 LMTK2Q8IWU2 1503 aa5.91□□□□□ -1.46
MCF2-201ENST00000338585 SPHKAPQ2M3C7 1700 aa5.9□□□□□ -1.46
MCF2-201ENST00000338585 UGGT1Q9NYU2 1555 aa5.9□□□□□ -1.46
MCF2-201ENST00000338585 PTPRTO14522 1441 aa5.9□□□□□ -1.46
MCF2-201ENST00000338585 KDM2AQ9Y2K7 1162 aa5.9□□□□□ -1.46
MCF2-201ENST00000338585 TRPM2O94759 1503 aa5.9□□□□□ -1.46
MCF2-201ENST00000338585 DCAF11Q8TEB1 546 aa5.9□□□□□ -1.47
MCF2-201ENST00000338585 CLTCL1P53675 1640 aa5.9□□□□□ -1.47
MCF2-201ENST00000338585 NPATQ14207 1427 aa5.9□□□□□ -1.47
MCF2-201ENST00000338585 CAPN15O75808 1086 aa5.89□□□□□ -1.47
MCF2-201ENST00000338585 ARHGEF40Q8TER5 1519 aa5.89□□□□□ -1.47
MCF2-201ENST00000338585 CFAP65Q6ZU64 1925 aaKnown RBP5.89□□□□□ -1.47
MCF2-201ENST00000338585 CAMSAP1Q5T5Y3 1602 aa5.89□□□□□ -1.47
MCF2-201ENST00000338585 SPATA31E1Q6ZUB1 1445 aa5.88□□□□□ -1.47
MCF2-201ENST00000338585 REREQ9P2R6 1566 aa5.88□□□□□ -1.47
MCF2-201ENST00000338585 MLECQ14165 292 aa5.88□□□□□ -1.47
MCF2-201ENST00000338585 AGLP35573 1532 aa5.88□□□□□ -1.47
MCF2-201ENST00000338585 HSPA5P11021 654 aaKnown RBP5.88□□□□□ -1.47
MCF2-201ENST00000338585 UHRF1BP1Q6BDS2 1440 aa5.88□□□□□ -1.47
MCF2-201ENST00000338585 ZC3H13Q5T200 1668 aaKnown RBP5.86□□□□□ -1.47
MCF2-201ENST00000338585 PRAG1Q86YV5 1406 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 RALGAPBQ86X10 1494 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 EIF4G2P78344 907 aaKnown RBP eCLIP5.86□□□□□ -1.47
MCF2-201ENST00000338585 MROH2AA6NES4 1674 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 SYNMO15061 1565 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 NOS1P29475 1434 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 ARHGAP31Q2M1Z3 1444 aa5.86□□□□□ -1.47
MCF2-201ENST00000338585 FBXO31Q5XUX0 539 aaPredicted RBP5.85□□□□□ -1.47
MCF2-201ENST00000338585 CNTLNQ9NXG0 1405 aa5.85□□□□□ -1.47
MCF2-201ENST00000338585 CLTCQ00610 1675 aaKnown RBP5.85□□□□□ -1.47
MCF2-201ENST00000338585 ARID4BQ4LE39 1312 aaPredicted RBP5.85□□□□□ -1.47
MCF2-201ENST00000338585 CHGAP10645 457 aaKnown RBP5.85□□□□□ -1.47
MCF2-201ENST00000338585 NBPF1Q3BBV0 1214 aa5.85□□□□□ -1.47
MCF2-201ENST00000338585 DDX10Q13206 875 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms