RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 YTHDC2Q9H6S0 1430 aaKnown RBP3.57□□□□□ -1.84
LINC00643-201ENST00000334389 TSPOAP1O95153 1857 aa3.56□□□□□ -1.84
LINC00643-201ENST00000334389 ABCC1P33527 1531 aa3.56□□□□□ -1.84
LINC00643-201ENST00000334389 RBAK-RBAKDNI3L0D1 243 aa3.56□□□□□ -1.84
LINC00643-201ENST00000334389 USP32Q8NFA0 1604 aa3.56□□□□□ -1.84
LINC00643-201ENST00000334389 ARHGEF5Q12774 1597 aa3.56□□□□□ -1.84
LINC00643-201ENST00000334389 NKTRP30414 1462 aaKnown RBP3.56□□□□□ -1.84
LINC00643-201ENST00000334389 GPATCH8Q9UKJ3 1502 aaKnown RBP3.56□□□□□ -1.84
LINC00643-201ENST00000334389 NWD2Q9ULI1 1742 aa3.55□□□□□ -1.84
LINC00643-201ENST00000334389 ATP10AO60312 1499 aa3.55□□□□□ -1.84
LINC00643-201ENST00000334389 NLRP1Q9C000 1473 aa3.55□□□□□ -1.84
LINC00643-201ENST00000334389 KIDINS220Q9ULH0 1771 aa3.55□□□□□ -1.84
LINC00643-201ENST00000334389 RGPD1P0DJD0 1748 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 GABBR2O75899 941 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 DUOX2Q9NRD8 1548 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 TMEM131LA2VDJ0 1609 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 TRPM1Q7Z4N2 1603 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 A2ML1A8K2U0 1454 aa3.54□□□□□ -1.84
LINC00643-201ENST00000334389 UBR1Q8IWV7 1749 aa3.53□□□□□ -1.84
LINC00643-201ENST00000334389 CDC42BPBQ9Y5S2 1711 aa3.53□□□□□ -1.84
LINC00643-201ENST00000334389 CAMSAP1Q5T5Y3 1602 aa3.53□□□□□ -1.84
LINC00643-201ENST00000334389 KNDC1Q76NI1 1749 aa3.52□□□□□ -1.85
LINC00643-201ENST00000334389 RTEL1-TNFRSF6BF6WH68 1400 aa3.52□□□□□ -1.85
LINC00643-201ENST00000334389 CDC42BPAQ5VT25 1732 aa3.52□□□□□ -1.85
LINC00643-201ENST00000334389 COL16A1Q07092 1604 aaPredicted RBP3.52□□□□□ -1.85
LINC00643-201ENST00000334389 USP54Q70EL1 1684 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 PIK3C2BO00750 1634 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 ZNF518AQ6AHZ1 1483 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 SAMD9LQ8IVG5 1584 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 STRCP1A6NGW2 1772 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 DCCP43146 1447 aa3.51□□□□□ -1.85
LINC00643-201ENST00000334389 CHD2O14647 1828 aaKnown RBP3.51□□□□□ -1.85
LINC00643-201ENST00000334389 KIAA1107Q9UPP5 1409 aa3.5□□□□□ -1.85
LINC00643-201ENST00000334389 GLI3P10071 1580 aa3.5□□□□□ -1.85
LINC00643-201ENST00000334389 MAP3K1Q13233 1512 aa3.5□□□□□ -1.85
LINC00643-201ENST00000334389 ADGRB3O60242 1522 aa3.5□□□□□ -1.85
LINC00643-201ENST00000334389 ARHGAP31Q2M1Z3 1444 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 U3KPZ7 1027 aaPredicted RBP3.49□□□□□ -1.85
LINC00643-201ENST00000334389 WNK3Q9BYP7 1800 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 TRPM2O94759 1503 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 DENND4BO75064 1496 aaPredicted RBP3.49□□□□□ -1.85
LINC00643-201ENST00000334389 TRAPPC8Q9Y2L5 1435 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 CICQ96RK0 1608 aaPredicted RBP3.49□□□□□ -1.85
LINC00643-201ENST00000334389 XRN1Q8IZH2 1706 aaKnown RBP3.49□□□□□ -1.85
LINC00643-201ENST00000334389 SYCP2Q9BX26 1530 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 TRIM41Q8WV44 630 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 PRXQ9BXM0 1461 aa3.49□□□□□ -1.85
LINC00643-201ENST00000334389 DISP2A7MBM2 1401 aa3.48□□□□□ -1.85
LINC00643-201ENST00000334389 EEA1Q15075 1411 aa3.48□□□□□ -1.85
LINC00643-201ENST00000334389 GCC2Q8IWJ2 1684 aa3.48□□□□□ -1.85
LINC00643-201ENST00000334389 ABCC6O95255 1503 aa3.48□□□□□ -1.85
LINC00643-201ENST00000334389 PRDM15P57071 1507 aaPredicted RBP3.48□□□□□ -1.85
LINC00643-201ENST00000334389 FAM135BQ49AJ0 1406 aa3.48□□□□□ -1.85
LINC00643-201ENST00000334389 CRYBG1Q9Y4K1 1723 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 PLCH1Q4KWH8 1693 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 PZPP20742 1482 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 CCDC18Q5T9S5 1454 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 SPINK5Q9NQ38 1064 aaPredicted RBP3.47□□□□□ -1.85
LINC00643-201ENST00000334389 MST1RQ04912 1400 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 KIF27Q86VH2 1401 aa3.47□□□□□ -1.85
LINC00643-201ENST00000334389 KIF1AQ12756 1690 aa3.46□□□□□ -1.85
LINC00643-201ENST00000334389 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.46□□□□□ -1.86
LINC00643-201ENST00000334389 HNRNPUL2Q1KMD3 747 aaKnown RBP3.46□□□□□ -1.86
LINC00643-201ENST00000334389 MAMSTRQ6ZN01 415 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 UHRF1BP1Q6BDS2 1440 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 LRRIQ1Q96JM4 1722 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 ABCA3Q99758 1704 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 CASZ1Q86V15 1759 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 TNS1Q9HBL0 1735 aaKnown RBP3.46□□□□□ -1.86
LINC00643-201ENST00000334389 PLCH2O75038 1416 aa3.46□□□□□ -1.86
LINC00643-201ENST00000334389 CERKQ8TCT0 537 aa3.45□□□□□ -1.86
LINC00643-201ENST00000334389 PTPRGP23470 1445 aa3.45□□□□□ -1.86
LINC00643-201ENST00000334389 PKD2Q13563 968 aa3.45□□□□□ -1.86
LINC00643-201ENST00000334389 CLTCQ00610 1675 aaKnown RBP3.45□□□□□ -1.86
LINC00643-201ENST00000334389 NALCNQ8IZF0 1738 aa3.45□□□□□ -1.86
LINC00643-201ENST00000334389 SHANK2Q9UPX8 1470 aa3.44□□□□□ -1.86
LINC00643-201ENST00000334389 REM2Q8IYK8 340 aaPredicted RBP3.44□□□□□ -1.86
LINC00643-201ENST00000334389 RALGAPBQ86X10 1494 aa3.44□□□□□ -1.86
LINC00643-201ENST00000334389 LRRC7Q96NW7 1537 aa3.44□□□□□ -1.86
LINC00643-201ENST00000334389 ADGRB2O60241 1585 aa3.44□□□□□ -1.86
LINC00643-201ENST00000334389 QRICH2Q9H0J4 1663 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 NRAPQ86VF7 1730 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 EVX2Q03828 476 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 ZBTB12Q9Y330 459 aaPredicted RBP3.43□□□□□ -1.86
LINC00643-201ENST00000334389 ZNF831Q5JPB2 1677 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 LAMB1P07942 1786 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 THSD7BQ9C0I4 1608 aa3.43□□□□□ -1.86
LINC00643-201ENST00000334389 PHLPP1O60346 1717 aa3.42□□□□□ -1.86
LINC00643-201ENST00000334389 RPRD2Q5VT52 1461 aaKnown RBP3.42□□□□□ -1.86
LINC00643-201ENST00000334389 THSD7AQ9UPZ6 1657 aa3.42□□□□□ -1.86
LINC00643-201ENST00000334389 ERVK-7P63135 1459 aa3.42□□□□□ -1.86
LINC00643-201ENST00000334389 PIK3R4Q99570 1358 aa3.42□□□□□ -1.86
LINC00643-201ENST00000334389 OTUD5Q96G74 571 aa3.42□□□□□ -1.86
LINC00643-201ENST00000334389 SETBP1Q9Y6X0 1596 aa3.41□□□□□ -1.86
LINC00643-201ENST00000334389 IGF1RP08069 1367 aa3.41□□□□□ -1.86
LINC00643-201ENST00000334389 KIAA1210Q9ULL0 1709 aa3.41□□□□□ -1.86
LINC00643-201ENST00000334389 CEP152O94986 1710 aa3.41□□□□□ -1.86
LINC00643-201ENST00000334389 NUP153P49790 1475 aaKnown RBP3.4□□□□□ -1.86
LINC00643-201ENST00000334389 CDC42BPGQ6DT37 1551 aa3.4□□□□□ -1.87
LINC00643-201ENST00000334389 NUP188Q5SRE5 1749 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms