RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RALBP1Q15311 655 aa17.62■□□□□ 0.41
CCDC88C-201ENST00000331194 POGKQ9P215 609 aa17.61■□□□□ 0.41
CCDC88C-201ENST00000331194 CC2D1BQ5T0F9 858 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-201ENST00000331194 SAMD9Q5K651 1589 aa17.61■□□□□ 0.41
CCDC88C-201ENST00000331194 DAPK1P53355 1430 aa17.6■□□□□ 0.41
CCDC88C-201ENST00000331194 FAM43AQ8N2R8 423 aa17.6■□□□□ 0.41
CCDC88C-201ENST00000331194 RSPH6AQ9H0K4 717 aa17.6■□□□□ 0.41
CCDC88C-201ENST00000331194 ABCC5O15440 1437 aa17.6■□□□□ 0.41
CCDC88C-201ENST00000331194 PDE3BQ13370 1112 aa17.59■□□□□ 0.41
CCDC88C-201ENST00000331194 KDM5CP41229 1560 aa17.59■□□□□ 0.41
CCDC88C-201ENST00000331194 RRAGDQ9NQL2 400 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-201ENST00000331194 KDM2BQ8NHM5 1336 aa17.59■□□□□ 0.41
CCDC88C-201ENST00000331194 PLB1Q6P1J6 1458 aa17.59■□□□□ 0.41
CCDC88C-201ENST00000331194 FAM161AQ3B820 660 aa17.58■□□□□ 0.41
CCDC88C-201ENST00000331194 NLRP13Q86W25 1043 aa17.58■□□□□ 0.41
CCDC88C-201ENST00000331194 PZPP20742 1482 aa17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 KIAA0586Q9BVV6 1533 aa17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 SYNJ2O15056 1496 aa17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 MBD5Q9P267 1494 aa17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 ARID4BQ4LE39 1312 aaPredicted RBP17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 DISP1Q96F81 1524 aa17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 ROCK2O75116 1388 aaKnown RBP17.57■□□□□ 0.4
CCDC88C-201ENST00000331194 CEP170Q5SW79 1584 aa17.56■□□□□ 0.4
CCDC88C-201ENST00000331194 PODXL2Q9NZ53 605 aa17.55■□□□□ 0.4
CCDC88C-201ENST00000331194 EPRSP07814 1512 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-201ENST00000331194 SLKQ9H2G2 1235 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-201ENST00000331194 KTN1Q86UP2 1357 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-201ENST00000331194 VSIG10Q8N0Z9 540 aa17.52■□□□□ 0.4
CCDC88C-201ENST00000331194 ROCK1Q13464 1354 aa17.52■□□□□ 0.4
CCDC88C-201ENST00000331194 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-201ENST00000331194 MAGI1Q96QZ7 1491 aaPredicted RBP17.52■□□□□ 0.39
CCDC88C-201ENST00000331194 PRG4Q92954 1404 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-201ENST00000331194 ZMYND15Q9H091 742 aa17.51■□□□□ 0.39
CCDC88C-201ENST00000331194 SEC24BO95487 1268 aa17.5■□□□□ 0.39
CCDC88C-201ENST00000331194 KIAA1107Q9UPP5 1409 aa17.5■□□□□ 0.39
CCDC88C-201ENST00000331194 PER1O15534 1290 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-201ENST00000331194 PARD3Q8TEW0 1356 aa17.49■□□□□ 0.39
CCDC88C-201ENST00000331194 ADAMTS8Q9UP79 889 aa17.48■□□□□ 0.39
CCDC88C-201ENST00000331194 KIF14Q15058 1648 aa17.48■□□□□ 0.39
CCDC88C-201ENST00000331194 NBPF1Q3BBV0 1214 aa17.45■□□□□ 0.38
CCDC88C-201ENST00000331194 NUP153P49790 1475 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-201ENST00000331194 GLIPR1L2Q4G1C9 344 aa17.45■□□□□ 0.38
CCDC88C-201ENST00000331194 KIAA0556O60303 1618 aa17.45■□□□□ 0.38
CCDC88C-201ENST00000331194 USP19O94966 1318 aa17.45■□□□□ 0.38
CCDC88C-201ENST00000331194 RALGAPBQ86X10 1494 aa17.44■□□□□ 0.38
CCDC88C-201ENST00000331194 DUSP27Q5VZP5 1158 aa17.43■□□□□ 0.38
CCDC88C-201ENST00000331194 PANK3Q9H999 370 aa17.43■□□□□ 0.38
CCDC88C-201ENST00000331194 DNMT1P26358 1616 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-201ENST00000331194 CFDP1Q9UEE9 299 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-201ENST00000331194 RGL3Q3MIN7 710 aa17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 SPRYD3Q8NCJ5 442 aa17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 PLEKHH1Q9ULM0 1364 aa17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 IGHDP01880 384 aa17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 NAP1L5Q96NT1 182 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 GZF1Q9H116 711 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 CARMIL2Q6F5E8 1435 aa17.42■□□□□ 0.38
CCDC88C-201ENST00000331194 PANK2Q9BZ23 570 aa17.41■□□□□ 0.38
CCDC88C-201ENST00000331194 NUP160Q12769 1436 aa17.41■□□□□ 0.38
CCDC88C-201ENST00000331194 NUP155O75694 1391 aa17.4■□□□□ 0.38
CCDC88C-201ENST00000331194 PLEKHD1A6NEE1 506 aa17.4■□□□□ 0.38
CCDC88C-201ENST00000331194 UHRF1BP1Q6BDS2 1440 aa17.4■□□□□ 0.38
CCDC88C-201ENST00000331194 BCAR3O75815 825 aa17.4■□□□□ 0.38
CCDC88C-201ENST00000331194 PTPRGP23470 1445 aa17.39■□□□□ 0.37
CCDC88C-201ENST00000331194 BLMP54132 1417 aaPredicted RBP17.39■□□□□ 0.37
CCDC88C-201ENST00000331194 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-201ENST00000331194 ERCC6L2Q5T890 1561 aa17.37■□□□□ 0.37
CCDC88C-201ENST00000331194 XRCC6P12956 609 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC88C-201ENST00000331194 E9PCH4 1651 aa17.37■□□□□ 0.37
CCDC88C-201ENST00000331194 CCDC146Q8IYE0 955 aa17.37■□□□□ 0.37
CCDC88C-201ENST00000331194 DISP3Q9P2K9 1392 aa17.36■□□□□ 0.37
CCDC88C-201ENST00000331194 ZMYM4Q5VZL5 1548 aa17.34■□□□□ 0.37
CCDC88C-201ENST00000331194 SLC24A1O60721 1099 aa17.34■□□□□ 0.37
CCDC88C-201ENST00000331194 HNRNPMP52272 730 aaKnown RBP eCLIP17.34■□□□□ 0.37
CCDC88C-201ENST00000331194 GOLGA2Q08379 1002 aa17.34■□□□□ 0.37
CCDC88C-201ENST00000331194 ANKRD50Q9ULJ7 1429 aa17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 PNNQ9H307 717 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 CHD1O14646 1710 aa17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 RAPGEF6Q8TEU7 1601 aa17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 WDR43Q15061 677 aaKnown RBP eCLIP17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 L1TD1Q5T7N2 865 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 ANTXR1Q9H6X2 564 aa17.32■□□□□ 0.36
CCDC88C-201ENST00000331194 CAMSAP2Q08AD1 1489 aa17.31■□□□□ 0.36
CCDC88C-201ENST00000331194 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-201ENST00000331194 TESK2Q96S53 571 aa17.3■□□□□ 0.36
CCDC88C-201ENST00000331194 BECN1Q14457 450 aa17.3■□□□□ 0.36
CCDC88C-201ENST00000331194 HSP90AA2PQ14568 343 aaPredicted RBP17.3■□□□□ 0.36
CCDC88C-201ENST00000331194 SLFN5Q08AF3 891 aa17.29■□□□□ 0.36
CCDC88C-201ENST00000331194 DMRT2Q9Y5R5 561 aa17.29■□□□□ 0.36
CCDC88C-201ENST00000331194 ATP10BO94823 1461 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 GOLGA6L3A6NEY3 463 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 PANK1Q8TE04 598 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 TBC1D2Q9BYX2 928 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 ZNF521Q96K83 1311 aa17.28■□□□□ 0.36
CCDC88C-201ENST00000331194 PPP2R1AP30153 589 aa17.27■□□□□ 0.36
CCDC88C-201ENST00000331194 ANKRD30AQ9BXX3 1397 aa17.27■□□□□ 0.36
CCDC88C-201ENST00000331194 APAF1O14727 1248 aa17.26■□□□□ 0.35
CCDC88C-201ENST00000331194 HSP90AA1P07900 732 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-201ENST00000331194 TROQ12816 1431 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-201ENST00000331194 CLCN1P35523 988 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms